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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956340
Clone id TST39A01NGRL0025_H19
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_H19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATGCTGTAGTATGCGGCCATGTCCCTCTCTCTTCTGAGCATCAAGCGACGCTAAGCAGT
GAGCAAGCACTCCCCTACCTGCCCCCGTGCTGCAGCATGTGGCCATGTCCTCTCTTCTAT
GCACGAGCAGGTTACCAAGCTAGGTGGCCGACTCTATCACCTTCAAGATTAGTGCATTTG
CCTGCAGCTAACAAGAAACCCTCACTTGCGCAGCACGCCTGGCAAAGCCTAGGAGATAGA
CTACATTCTCTATTGGAGTGCTGTTCAGAACGGCAGCAGCTTGCCACGAATTTTTCTCAC
AAGCAGATAAACGCTAGCAGCAGCTCATTGAAGTCTTTGTATGGCAGATTGACGCCACCA
ACCCTGCGTCTGCCCCCCTCATGAGCAACTCATGCCAAAACGACACATGCGCCCCCTCAT
GAGCAACACACGCAGATGTAGCTCCTGGGCGCTTGCTGGTGATGGCCTTGTGTCCGGTTG
GCATAATCCAAGCATGTCACTTCACGGGCAGCTCTATGCTCTTGATTGCCCTGATGGTTG
TAAGCTCCGTGTTTACGATGATCTAAGTGAGTCATGGTACCCATCTGTTGACAGCAAAGT
TCATTTAGGAAATTCTAAGGATGTTG
■■Homology search results ■■ -
sp_hit_id Q93W93
Definition sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270 OS=Arabidopsis thaliana
Align length 62
Score (bit) 87.8
E-value 4.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956340|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_H19, 5'
         (626 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270 OS=Ar...    88   4e-17
sp|Q9C6Z0|FBK17_ARATH F-box/Kelch-repeat protein At1g30090 OS=Ar...    35   0.24 
sp|Q9C0F0|ASXL3_HUMAN Putative Polycomb group protein ASXL3 OS=H...    33   1.6  
sp|Q12NL5|LOLD_SHEDO Lipoprotein-releasing system ATP-binding pr...    32   3.5  
sp|P14360|V240_FOWPV Putative ankyrin repeat protein FPV240 OS=F...    31   4.5  
sp|Q9UGK8|SRGEF_HUMAN Secretion-regulating guanine nucleotide ex...    31   5.9  
sp|P34795|G6PI_ARATH Glucose-6-phosphate isomerase, cytosolic OS...    30   7.7  
sp|Q9FXM5|G6PI_ARAGE Glucose-6-phosphate isomerase, cytosolic OS...    30   7.7  
sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio reri...    30   7.7  

>sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270
           OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1
          Length = 434

 Score = 87.8 bits (216), Expect = 4e-17
 Identities = 36/62 (58%), Positives = 48/62 (77%)
 Frame = +2

Query: 440 SSWALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           +SW+   DG+V+GW NP  SL+G+LY LDC DGCKLRV+D+ ++SW   +DSK HLGNSK
Sbjct: 299 NSWSPVSDGMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSWNKFMDSKAHLGNSK 358

Query: 620 DV 625
            +
Sbjct: 359 SL 360


>sp|Q9C6Z0|FBK17_ARATH F-box/Kelch-repeat protein At1g30090
           OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1
          Length = 398

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 434 RCSSWALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESW 577
           R   W     GL  GW   S+ ++ +L+ +   +  K++VYD +++SW
Sbjct: 279 RTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSW 326


>sp|Q9C0F0|ASXL3_HUMAN Putative Polycomb group protein ASXL3 OS=Homo
            sapiens GN=ASXL3 PE=2 SV=3
          Length = 2248

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 9/186 (4%)
 Frame = -2

Query: 550  TELTTIRAIKSIELPVK*HAWIMPTGHKAITSKRPGATSACVAHEGAHVSFWHELLMRGA 371
            +EL     + ++ LPVK        G +  T   PG      A EGA      + +    
Sbjct: 1653 SELHPRNLVTNVALPVKSELHEADKGFRMDTEDFPGPELPPPAAEGASSVQQTQNMKAST 1712

Query: 370  DAGLVASICHTKTSM--------SCC*RLSACEKNSWQAAAVLNST-PIENVVYLLGFAR 218
             + +  +I     ++        S C RLS+ E N+     +L    P+E V+       
Sbjct: 1713 SSPMEEAISLATDALKRVPGAGSSGC-RLSSVEANNPLVTQLLQGNLPLEKVL------- 1764

Query: 217  RAAQVRVSC*LQANALILKVIESAT*LGNLLVHRREDMATCCSTGAGRGVLAHCLASLDA 38
               Q R+   L+ N L L +    T +G     R  ++        G+G LA  LA L  
Sbjct: 1765 --PQPRLGAKLEINRLPLPL--QTTSVGKTAPERNVEIPPSSPNPDGKGYLAGTLAPLQM 1820

Query: 37   QKREGH 20
            +KRE H
Sbjct: 1821 RKRENH 1826


>sp|Q12NL5|LOLD_SHEDO Lipoprotein-releasing system ATP-binding
           protein lolD OS=Shewanella denitrificans (strain OS217 /
           ATCC BAA-1090 / DSM 15013) GN=lolD PE=3 SV=1
          Length = 233

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 133 NLLVHRREDMATCCSTGAGRGVLAHCLASLDA 38
           NL VHR E +A   S+G+G+  L H + +L++
Sbjct: 32  NLTVHRGEQLAIVGSSGSGKSTLLHIMGTLES 63


>sp|P14360|V240_FOWPV Putative ankyrin repeat protein FPV240
           OS=Fowlpox virus GN=FPV240 PE=4 SV=1
          Length = 410

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -2

Query: 457 SKRPGATSACVAHEGAHVSFWHELLMRGADAGLVASIC---HTKTSMSC 320
           SKRP  T+ C A +   +      L RGAD+ +V ++    HT   M C
Sbjct: 197 SKRPCVTAMCYAIQNNKIDMVSMFLKRGADSNIVFTVMNEEHTTLEMIC 245


>sp|Q9UGK8|SRGEF_HUMAN Secretion-regulating guanine nucleotide
           exchange factor OS=Homo sapiens GN=SERGEF PE=1 SV=2
          Length = 458

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 10  VCGHVPLSSEHQATLSSEQALPYLPPCCSMWPCPLFYARAGY 135
           VCG   L+ + Q  L   + +PY  PC S++ CP+     G+
Sbjct: 72  VCG---LNKDGQLGLGHTEDIPYFTPCKSLFGCPIQQVACGW 110


>sp|P34795|G6PI_ARATH Glucose-6-phosphate isomerase, cytosolic
           OS=Arabidopsis thaliana GN=PGIC PE=2 SV=1
          Length = 560

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 380 HEQLMPKRHMRPLMSNTRRCSSWALAGDGLV 472
           H + + K H+R LMS+  RC S  +  DGL+
Sbjct: 20  HVEDIKKTHLRDLMSDANRCQSMMMEFDGLL 50


>sp|Q9FXM5|G6PI_ARAGE Glucose-6-phosphate isomerase, cytosolic
           OS=Arabis gemmifera GN=PGIC PE=3 SV=2
          Length = 560

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 380 HEQLMPKRHMRPLMSNTRRCSSWALAGDGLV 472
           H + + K H+R LMS+  RC S  +  DGL+
Sbjct: 20  HVEDIKKTHLRDLMSDANRCQSMMMEFDGLL 50


>sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio rerio
            GN=agtpbp1 PE=2 SV=1
          Length = 1153

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
 Frame = +2

Query: 278  SLPRIFLTSR*TLAAAH*SLCMAD*RHQPCVCPPHEQ---------LMPKRHMRPLMSNT 430
            S P IFL++R      + S  M         C P  Q         +MP  +   +++  
Sbjct: 834  SRPVIFLSARVHPGETNSSWVMKGSLEFLMSCSPQAQSLRQSYIFKIMPMLNPDGVINGN 893

Query: 431  RRCSSWALAGDGLVSGWHNPSMSLHGQLY 517
             RCS   L+G+ L   W NP+  LH  +Y
Sbjct: 894  HRCS---LSGEDLNRQWQNPNAELHPTIY 919
tr_hit_id A7PF14
Definition tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 59
Score (bit) 94.0
E-value 7.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956340|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_H19, 5'
         (626 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genom...    94   7e-18
tr|A5BHH2|A5BHH2_VITVI Putative uncharacterized protein OS=Vitis...    94   7e-18
tr|A5C9A3|A5C9A3_VITVI Putative uncharacterized protein (Chromos...    89   2e-16
tr|A9RGV2|A9RGV2_PHYPA Predicted protein OS=Physcomitrella paten...    82   3e-14
tr|A5BUP5|A5BUP5_VITVI Putative uncharacterized protein OS=Vitis...    79   2e-13
tr|B6U1Z3|B6U1Z3_MAIZE Kelch motif family protein OS=Zea mays PE...    77   1e-12
tr|Q8S7U1|Q8S7U1_ORYSJ Putative Kelch motif containing protein O...    75   4e-12
tr|Q10R89|Q10R89_ORYSJ Os03g0167800 protein OS=Oryza sativa subs...    75   4e-12
tr|B8APA1|B8APA1_ORYSI Putative uncharacterized protein OS=Oryza...    75   4e-12
tr|A3AEI2|A3AEI2_ORYSJ Putative uncharacterized protein OS=Oryza...    75   4e-12
tr|A0SHJ8|A0SHJ8_ORYRU Kelch-motif containing protein (Fragment)...    74   5e-12
tr|A0SHJ5|A0SHJ5_ORYRU Kelch-motif containing protein (Fragment)...    74   5e-12
tr|A0SHJ3|A0SHJ3_ORYSI Kelch-motif containing protein (Fragment)...    74   5e-12
tr|B6TP81|B6TP81_MAIZE Ring canal kelch OS=Zea mays PE=2 SV=1          74   7e-12
tr|Q7XES2|Q7XES2_ORYSJ Os10g0409900 protein OS=Oryza sativa subs...    74   9e-12
tr|B8BGS5|B8BGS5_ORYSI Putative uncharacterized protein OS=Oryza...    74   9e-12
tr|A3C4N2|A3C4N2_ORYSJ Putative uncharacterized protein OS=Oryza...    74   9e-12
tr|A0SHK4|A0SHK4_ORYRU Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHK1|A0SHK1_ORYRU Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHJ6|A0SHJ6_ORYRU Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHJ4|A0SHJ4_ORYSI Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHJ2|A0SHJ2_ORYSI Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHJ1|A0SHJ1_ORYSI Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHJ0|A0SHJ0_ORYSJ Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHI9|A0SHI9_ORYSJ Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHI8|A0SHI8_ORYSJ Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHI7|A0SHI7_ORYSJ Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHI5|A0SHI5_ORYNI Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHI3|A0SHI3_9ORYZ Kelch-motif containing protein (Fragment)...    74   9e-12
tr|A0SHI1|A0SHI1_ORYLO Kelch-motif containing protein (Fragment)...    74   9e-12

>tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016869001
           PE=4 SV=1
          Length = 428

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 40/59 (67%), Positives = 49/59 (83%)
 Frame = +2

Query: 443 SWALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           SW    DG+V+GW NPS SL+GQLYALDC DGCKLRVYD++S+SW   +DSK+HLGNS+
Sbjct: 289 SWYPVYDGMVAGWRNPSASLNGQLYALDCKDGCKLRVYDEVSDSWSKHIDSKMHLGNSQ 347


>tr|A5BHH2|A5BHH2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011673 PE=4 SV=1
          Length = 428

 Score = 94.0 bits (232), Expect = 7e-18
 Identities = 40/59 (67%), Positives = 49/59 (83%)
 Frame = +2

Query: 443 SWALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           SW    DG+V+GW NPS SL+GQLYALDC DGCKLRVYD++S+SW   +DSK+HLGNS+
Sbjct: 289 SWYPVYDGMVAGWRNPSASLNGQLYALDCKDGCKLRVYDEVSDSWSKHIDSKMHLGNSQ 347


>tr|A5C9A3|A5C9A3_VITVI Putative uncharacterized protein (Chromosome
           chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00024761001 PE=4 SV=1
          Length = 437

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 37/60 (61%), Positives = 49/60 (81%)
 Frame = +2

Query: 440 SSWALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           ++W    DG+V+GW NPS+SL+GQLYALDC DGCKLRVYD  ++SW   +DSK+HLG+S+
Sbjct: 298 NTWTPISDGMVAGWRNPSISLNGQLYALDCRDGCKLRVYDSDTDSWNKFIDSKLHLGSSR 357


>tr|A9RGV2|A9RGV2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_202273 PE=4 SV=1
          Length = 426

 Score = 82.0 bits (201), Expect = 3e-14
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +2

Query: 446 WALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           W    DG+V+GW NP + LHG LYALDC DGCKLR+YD  +++W  SVDS+ HLG S+
Sbjct: 290 WTPVMDGMVAGWRNPCVELHGNLYALDCRDGCKLRMYDRDTDAWSRSVDSRFHLGGSR 347


>tr|A5BUP5|A5BUP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029619 PE=4 SV=1
          Length = 116

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 33/51 (64%), Positives = 43/51 (84%)
 Frame = +2

Query: 467 LVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           +V+GW NPS+SL+GQLYALDC  GCKLRVYD  ++SW   +DSK+HLG+S+
Sbjct: 1   MVAGWRNPSISLNGQLYALDCQGGCKLRVYDSDTDSWNKFIDSKLHLGSSR 51


>tr|B6U1Z3|B6U1Z3_MAIZE Kelch motif family protein OS=Zea mays PE=2
           SV=1
          Length = 437

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 31/60 (51%), Positives = 46/60 (76%)
 Frame = +2

Query: 440 SSWALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           ++W+   D +V+GW NPS+S +G+LY+ DC DGCKLRVYD+ + +W   +DSK HLG+S+
Sbjct: 298 NTWSAIDDEMVTGWRNPSISFNGRLYSADCRDGCKLRVYDENTGTWTRFMDSKHHLGSSR 357


>tr|Q8S7U1|Q8S7U1_ORYSJ Putative Kelch motif containing protein
           OS=Oryza sativa subsp. japonica GN=OSJNBa0091P11.35 PE=4
           SV=1
          Length = 493

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = +2

Query: 446 WALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           W++  D +V+GW NPS+  +G+LY+ +C DGCKLRVYD  + SW   +DS+ HLGNS+
Sbjct: 356 WSVTADEMVTGWRNPSICFNGRLYSAECRDGCKLRVYDRDTRSWTRFMDSRRHLGNSR 413


>tr|Q10R89|Q10R89_ORYSJ Os03g0167800 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0167800 PE=2 SV=1
          Length = 438

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = +2

Query: 446 WALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           W++  D +V+GW NPS+  +G+LY+ +C DGCKLRVYD  + SW   +DS+ HLGNS+
Sbjct: 301 WSVTADEMVTGWRNPSICFNGRLYSAECRDGCKLRVYDRDTRSWTRFMDSRRHLGNSR 358


>tr|B8APA1|B8APA1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10170 PE=4 SV=1
          Length = 438

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = +2

Query: 446 WALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           W++  D +V+GW NPS+  +G+LY+ +C DGCKLRVYD  + SW   +DS+ HLGNS+
Sbjct: 301 WSVTADEMVTGWRNPSICFNGRLYSAECRDGCKLRVYDRDTRSWTRFMDSRRHLGNSR 358


>tr|A3AEI2|A3AEI2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009204 PE=4 SV=1
          Length = 502

 Score = 74.7 bits (182), Expect = 4e-12
 Identities = 30/58 (51%), Positives = 43/58 (74%)
 Frame = +2

Query: 446 WALAGDGLVSGWHNPSMSLHGQLYALDCPDGCKLRVYDDLSESWYPSVDSKVHLGNSK 619
           W++  D +V+GW NPS+  +G+LY+ +C DGCKLRVYD  + SW   +DS+ HLGNS+
Sbjct: 365 WSVTADEMVTGWRNPSICFNGRLYSAECRDGCKLRVYDRDTRSWTRFMDSRRHLGNSR 422