NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956351
Clone id TST39A01NGRL0025_I06
Library
Length 628
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_I06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GATAGAAGTTGCCACTTTCTTAGCAATCGGCTATGGTGTTCTCTTAGCAGAAAAGGTGGC
TTCTTCCCCCCAGTTGCCTTTTTCCTACACATCGCTGCTTCTGCTCAAATCTGCTTCACC
CACTTTCAAAAGACTGCTTATGCTGAAGCGCACAACAACATGAGAGGATGCCTCAGCTAT
GTAAGGAGAAGAAGTAGGAAGGATATAGTGGGCAACAGTCCGAGTTCTAAAAGAGACAGT
GACGATGATGACATGAAGAATGAAGTCTGGTTTGATTCGAGGCTAATATTCGAATCTGAT
TCAGATGATGATTTCAAGTCGGTGAATGGCGATTCATTGCCTTCAAGCTTTGGCTACTCT
TACTCGAGCCAAGGAGCACCACGGCCAACCTTTTCATCTTTGAAAGAAAGGATGGAAGAA
CTGGTTCGAGAAAACGGTGTACATGAAGCCCACTTTGTCCTACCTCAAAGTGGGCAAACC
AGCCCAGAAGAGAAGAAAACACTGGGACAATTGTTCACTTTCAAGCTAGAAGGAGAGAAA
AAGCCAGAAAGTGAAAATAAGCATTCTGTTATGCCAAGGCAAGGATCAAAGAAGGGGTAT
CCTGATGATGCCGTCTCGCAAAGATCAT
■■Homology search results ■■ -
sp_hit_id Q9LK32
Definition sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana
Align length 99
Score (bit) 48.1
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956351|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_I06, 5'
         (628 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabi...    48   4e-05
sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9 O...    32   3.5  
sp|Q99P84|PLCE1_RAT 1-phosphatidylinositol-4,5-bisphosphate phos...    31   4.6  
sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''...    30   7.8  

>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210
           OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
          Length = 234

 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQGAPRPTFSSLKERMEELVREN 435
           K+E +FDS+   +SDSDDDF SVNGD               P+ +FS    R   L+   
Sbjct: 81  KDETFFDSQPWLQSDSDDDFHSVNGDFTPSLG-------NTPKSSFSDRPPRFHNLI--- 130

Query: 436 GVHEAHFVLPQSGQTSP---EEKKTLGQLFTFKLEGEKK 543
                H   P  G +SP     +K LG+LF   +  E++
Sbjct: 131 ----FHEKKPSRGSSSPAPLPRRKKLGELFRDSIREERE 165


>sp|Q9NQV7|PRDM9_HUMAN Histone-lysine N-methyltransferase PRDM9
           OS=Homo sapiens GN=PRDM9 PE=2 SV=2
          Length = 894

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +1

Query: 370 QGAPRPTFS---SLKE--RMEELVRENGVHEAHFVLPQSGQTSPEEKKTLGQLFTFKLEG 534
           +G P+ +FS   SLKE  R   L+  +G  +A   +  SG+ S     T GQ    KLE 
Sbjct: 117 KGMPKASFSNESSLKELSRTANLLNASGSEQAQKPVSPSGEAS-----TSGQHSRLKLEL 171

Query: 535 EKKPESENKHSVMPRQG 585
            KK      +S+  R+G
Sbjct: 172 RKKETERKMYSLRERKG 188


>sp|Q99P84|PLCE1_RAT 1-phosphatidylinositol-4,5-bisphosphate
           phosphodiesterase epsilon-1 OS=Rattus norvegicus
           GN=Plce1 PE=1 SV=1
          Length = 2281

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +1

Query: 385 PTFSSLKERMEELVRENGVHEAHFVLPQSGQTSPEEKKTLGQLFTFKLEGEKKPESENKH 564
           P +SS +E +E +   +G       + Q+G  +PE++ T+  +F       +  E+E++ 
Sbjct: 725 PRYSSQEEALEFVADYSGQDNFLQRVGQNGLKNPEKELTVNSIFQIIRSCSRSLETEDEE 784

Query: 565 SVMPRQGSKK 594
           S     GS+K
Sbjct: 785 SASEGSGSRK 794


>sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''
           OS=Adiantum capillus-veneris GN=rpoC2 PE=2 SV=2
          Length = 1420

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +1

Query: 22  SNRLWCSLSRKGGFF--PPVAFFLHIAASAQICFTHFQKTAYAEAHNNM---RGCLSYVR 186
           S+R WC + RKG FF  P   +  H  +S+ +   +      A+  NN+    G L  +R
Sbjct: 644 SSRPWCRVVRKGNFFLIPEEVYLTHEPSSSILVTNNAIVKKGAQITNNIITKSGGLIRMR 703

Query: 187 RRSR 198
           +RSR
Sbjct: 704 KRSR 707
tr_hit_id B8BCE0
Definition tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 26
Score (bit) 42.7
E-value 0.018
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956351|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_I06, 5'
         (628 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.018
tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medic...    40   0.12 
tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subs...    40   0.15 
tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.15 
tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.15 
tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.20 
tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized pr...    39   0.33 
tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.57 
tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequen...    37   0.75 
tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.75 
tr|A2WYF6|A2WYF6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.75 
tr|B6TYG3|B6TYG3_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.97 
tr|Q1PDP3|Q1PDP3_ARATH Putative uncharacterized protein OS=Arabi...    37   1.3  
tr|A0MFL1|A0MFL1_ARATH Putative uncharacterized protein (Fragmen...    37   1.3  
tr|A7PN08|A7PN08_VITVI Chromosome chr14 scaffold_21, whole genom...    35   2.8  
tr|Q9SY85|Q9SY85_ARATH F14N23.31 OS=Arabidopsis thaliana PE=4 SV=1     35   4.8  
tr|Q8LPT2|Q8LPT2_ARATH At1g10410/F14N23_31 OS=Arabidopsis thalia...    35   4.8  
tr|Q7XNQ0|Q7XNQ0_ORYSJ OSJNBb0089B03.11 protein (Putative unchar...    35   4.8  
tr|Q0JDS7|Q0JDS7_ORYSJ Os04g0380200 protein OS=Oryza sativa subs...    35   4.8  
tr|A2XSL5|A2XSL5_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.8  
tr|A2FXJ6|A2FXJ6_TRIVA Putative uncharacterized protein OS=Trich...    35   4.8  
tr|Q9A2D3|Q9A2D3_CAUCR Glycosyl transferase family protein OS=Ca...    34   6.3  
tr|Q7URQ9|Q7URQ9_RHOBA Putative uncharacterized protein OS=Rhodo...    34   6.3  
tr|B8H6F1|B8H6F1_CAUCR Glycosyltransferase OS=Caulobacter cresce...    34   6.3  
tr|A5BJK7|A5BJK7_VITVI Putative uncharacterized protein OS=Vitis...    34   6.3  

>tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29876 PE=4 SV=1
          Length = 542

 Score = 42.7 bits (99), Expect = 0.018
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGD 333
           K + WFDS  I E DSDD+FKSVNGD
Sbjct: 94  KEDAWFDSVSILEDDSDDEFKSVNGD 119


>tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 190

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQ-GAPRPTFSSLKERMEELVRE 432
           K E +FDS+   +SD +DDF SVNGD              G P    +S + R       
Sbjct: 66  KEEAFFDSKAWIDSDCEDDFYSVNGDFTPSRGNTPIHHAFGTPGVNKASSRNRTS----- 120

Query: 433 NGVHEAHFVLPQSGQTSPEEKKTLGQLF--TFKLEGEKKPESENKHSVMPR 579
                     P   ++SP++KK L +LF  + K   +   +  NK +  PR
Sbjct: 121 ----------PSPSESSPDKKKKLLELFKDSVKDNQDDDVKKRNKRNHHPR 161


>tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0577600 PE=4 SV=1
          Length = 565

 Score = 39.7 bits (91), Expect = 0.15
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGD 333
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38863 PE=4 SV=1
          Length = 566

 Score = 39.7 bits (91), Expect = 0.15
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGD 333
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035196 PE=4 SV=1
          Length = 543

 Score = 39.7 bits (91), Expect = 0.15
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGD 333
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 559

 Score = 39.3 bits (90), Expect = 0.20
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGD 333
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 90  QEEAWFDSVSILGSDSDEDFSSVNGD 115


>tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized
           protein At1g59650) (T30E16.22) OS=Arabidopsis thaliana
           GN=CW14 PE=1 SV=1
          Length = 492

 Score = 38.5 bits (88), Expect = 0.33
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +1

Query: 259 NEVWFDSRLIFESDSDDDFKSVNGD 333
           +E WFDS L FE+D DDDF SV  D
Sbjct: 57  DEAWFDSNLAFETDCDDDFHSVQED 81


>tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 228

 Score = 37.7 bits (86), Expect = 0.57
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +1

Query: 142 AEAHNNMRGCLS----YVRRRSRKDIVGNXXXXXXXXXXXXMKNEVWFDSRLIFESDSDD 309
           AEA N   GC      +   +S+ D                 K+EV+F+SR   +SD +D
Sbjct: 25  AEAANEKGGCGGGDDDFADFKSKVDAEQQRAELNPKSPDSGSKDEVFFESRAWLDSDCED 84

Query: 310 DFKSVNGD 333
           DF SVNGD
Sbjct: 85  DFYSVNGD 92


>tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1793G04.5 PE=2 SV=1
          Length = 231

 Score = 37.4 bits (85), Expect = 0.75
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +1

Query: 256 KNEVWFDSRLIFESDSDDDFKSVNGD 333
           K+E++FDSR   +SD +DDF SVNGD
Sbjct: 66  KDEMFFDSRAWLDSDCEDDFYSVNGD 91


>tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001040 PE=4 SV=1
          Length = 535

 Score = 37.4 bits (85), Expect = 0.75
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +1

Query: 262 EVWFDSRLIFESDSDDDFKSVNGD 333
           EVWFD  ++FESD DDDF S+  D
Sbjct: 64  EVWFDPVMVFESDLDDDFYSIQED 87