DK956358 |
Clone id |
TST39A01NGRL0025_I13 |
Library |
TST39 |
Length |
617 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_I13. 5' end sequence. |
Accession |
DK956358 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2330Contig1 |
Sequence |
AGGAAAAGTATATCATTGAGTCTAAGAAGCAAGATAACAGAGAGAAGTTGAGAGGATGAT GTGTGAACGAGTAGTGTCATTGAAGCAAACCATTGAGGTCGGGGTTTGAAGAGGGAAGAA CATTGGAGGGAGTCAGATGGTGATGGGATCCTTAGAGGGGATTTTGAGTAGGGCCAATAC AGGAGGCAATATGCAGAGCCTCAAGAGGATGACGAGACAGAGCCAGTCTATAGTACGCTA TCCAGGAAAATTGTTGAGGAGAGTAAGAAAGCAAAGCAGGGAGACCAGGTACAAGCAAAG CAAAATGAATTGCAGGATGGGATGATAAAGGCAAAGGAGAGAAGGTGTTGCTGAGGCCAT ATGCAAAACCTCATGAGGATGATGCAGAGAAGATGGGCCGAGGGTAGATGAAGCAAAGGG GATAGATGATGAGGACCGACCTGCAGGTTGAGGGCAGAGCAAGATGGCTGAGGGTCGGTG TAGCAGAGAGTGGGAAAGAGAAAGGGGAAGTAGAAGAAGAGCGGCAGATCATAGAGCAGA GGATGCAAAGAGATCGTTTTCAGAGCCGGAGTGAAACAAAGAAGAGGGACTGAGTATAGT TGATTGGTCCATGAAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5D1D6 |
Definition |
sp|Q5D1D6|GBP1_CERAE Interferon-induced guanylate-binding protein 1 OS=Cercopithecus aethiops |
Align length |
64 |
Score (bit) |
35.0 |
E-value |
0.31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956358|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_I13, 5' (617 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5D1D6|GBP1_CERAE Interferon-induced guanylate-binding protei... 35 0.31 sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein OS=R... 34 0.69 sp|Q5RBE1|GBP1_PONAB Interferon-induced guanylate-binding protei... 33 1.5 sp|P32455|GBP1_HUMAN Interferon-induced guanylate-binding protei... 33 1.5 sp|Q9WVB2|TLE2_MOUSE Transducin-like enhancer protein 2 OS=Mus m... 26 2.3 sp|P40059|DOT6_YEAST Disrupter of telomere silencing protein 6 O... 32 3.4 sp|P58835|HIS2_METKA Phosphoribosyl-ATP pyrophosphatase OS=Metha... 31 4.5 sp|Q8P3D7|PYRF_XANCP Orotidine 5'-phosphate decarboxylase OS=Xan... 31 5.8 sp|Q4UNV9|PYRF_XANC8 Orotidine 5'-phosphate decarboxylase OS=Xan... 31 5.8 sp|Q4LE39|ARI4B_HUMAN AT-rich interactive domain-containing prot... 31 5.8 sp|P51829|ADCY7_MOUSE Adenylate cyclase type 7 OS=Mus musculus G... 31 5.8 sp|Q3BMA4|PYRF_XANC5 Orotidine 5'-phosphate decarboxylase OS=Xan... 30 9.9 sp|Q9FM03|DOF56_ARATH Dof zinc finger protein DOF5.6 OS=Arabidop... 30 9.9
>sp|Q5D1D6|GBP1_CERAE Interferon-induced guanylate-binding protein 1 OS=Cercopithecus aethiops GN=GBP1 PE=2 SV=1 Length = 590
Score = 35.0 bits (79), Expect = 0.31 Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = +1
Query: 175 QYRRQYAEPQEDDETEPVYS---TLSRKIVEESKKAKQGDQVQAK--QNELQDGMIKAKE 339 ++ +Q E E D + + TL+ K+ E+ + K+G Q +++ QNE+QD K ++ Sbjct: 524 EHLKQLTEKMERDRAQLLKEQERTLALKLQEQERLLKEGFQTESRKMQNEIQDLQKKMRQ 583
Query: 340 RRCC 351 RR C Sbjct: 584 RRTC 587
>sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein OS=Rattus norvegicus GN=Slmap PE=3 SV=1 Length = 858
Score = 33.9 bits (76), Expect = 0.69 Identities = 14/32 (43%), Positives = 25/32 (78%) Frame = +1
Query: 247 KIVEESKKAKQGDQVQAKQNELQDGMIKAKER 342 K+VEESK +K+ +Q +AK+++L D + +KE+ Sbjct: 450 KVVEESKLSKEENQAKAKESDLSDTLSPSKEK 481
>sp|Q5RBE1|GBP1_PONAB Interferon-induced guanylate-binding protein 1 OS=Pongo abelii GN=GBP1 PE=2 SV=1 Length = 592
Score = 32.7 bits (73), Expect = 1.5 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = +1
Query: 175 QYRRQYAEPQEDDETEPVYS---TLSRKIVEESKKAKQGDQVQAK--QNELQDGMIKAKE 339 ++ +Q E E+D + + TL+ K+ E+ + K+G Q +++ +NE+QD K + Sbjct: 526 EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
Query: 340 RRCC 351 R+ C Sbjct: 586 RKAC 589
>sp|P32455|GBP1_HUMAN Interferon-induced guanylate-binding protein 1 OS=Homo sapiens GN=GBP1 PE=1 SV=1 Length = 592
Score = 32.7 bits (73), Expect = 1.5 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Frame = +1
Query: 175 QYRRQYAEPQEDDETEPVYS---TLSRKIVEESKKAKQGDQVQAK--QNELQDGMIKAKE 339 ++ +Q E E+D + + TL+ K+ E+ + K+G Q +++ +NE+QD K + Sbjct: 526 EHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRR 585
Query: 340 RRCC 351 R+ C Sbjct: 586 RKAC 589
>sp|Q9WVB2|TLE2_MOUSE Transducin-like enhancer protein 2 OS=Mus musculus GN=Tle2 PE=2 SV=1 Length = 767
Score = 25.8 bits (55), Expect(2) = 2.3 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = -3
Query: 447 PAGRS-SSSIPFASSTLGPSSLHHPHEVLHMASATPSLLCLYHPI 316 PA RS +S P SST GPSS H ++ +A + L P+ Sbjct: 324 PASRSCGTSPPQDSSTPGPSSASHLCQLAAQPAAPTDSIALRSPL 368
Score = 25.4 bits (54), Expect(2) = 2.3 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%) Frame = -2
Query: 340 SPLPLSSHPAIHFALLVPGLPALLSYSPQQFSWIAYYR----LALSRHP 206 S L SH ++ L +PG L SPQ S + Y R +A HP Sbjct: 376 SSFSLGSHSTLNGDLSMPGSYVGLHLSPQVSSSVVYGRSPLQMAFESHP 424
>sp|P40059|DOT6_YEAST Disrupter of telomere silencing protein 6 OS=Saccharomyces cerevisiae GN=DOT6 PE=1 SV=1 Length = 670
Score = 31.6 bits (70), Expect = 3.4 Identities = 13/25 (52%), Positives = 18/25 (72%) Frame = -3
Query: 435 SSSSIPFASSTLGPSSLHHPHEVLH 361 ++SS+PFA TL + HHPH+ LH Sbjct: 209 AASSMPFAPPTLPAALPHHPHQHLH 233
>sp|P58835|HIS2_METKA Phosphoribosyl-ATP pyrophosphatase OS=Methanopyrus kandleri GN=hisE PE=3 SV=1 Length = 100
Score = 31.2 bits (69), Expect = 4.5 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%) Frame = +1
Query: 193 AEPQEDDETEPVYSTLSRKIVEESKK----AKQGDQ 288 AE EDD+T+P + + KI+EES + AK GD+ Sbjct: 28 AELTEDDDTKPAINKICEKIIEESGELILAAKDGDR 63
>sp|Q8P3D7|PYRF_XANCP Orotidine 5'-phosphate decarboxylase OS=Xanthomonas campestris pv. campestris GN=pyrF PE=3 SV=1 Length = 243
Score = 30.8 bits (68), Expect = 5.8 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = -2
Query: 337 PLPLSSHPAIHFALLVPGLPALLSYSPQQFSWIAYYRLAL 218 PLPL++H + FAL VPG +++ + +A+Y++ + Sbjct: 5 PLPLAAHDRLIFALDVPGHDEAIAWVDRLGESVAFYKIGM 44
>sp|Q4UNV9|PYRF_XANC8 Orotidine 5'-phosphate decarboxylase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=pyrF PE=3 SV=1 Length = 243
Score = 30.8 bits (68), Expect = 5.8 Identities = 13/40 (32%), Positives = 25/40 (62%) Frame = -2
Query: 337 PLPLSSHPAIHFALLVPGLPALLSYSPQQFSWIAYYRLAL 218 PLPL++H + FAL VPG +++ + +A+Y++ + Sbjct: 5 PLPLAAHDRLIFALDVPGHDEAIAWVDRLGESVAFYKIGM 44
>sp|Q4LE39|ARI4B_HUMAN AT-rich interactive domain-containing protein 4B OS=Homo sapiens GN=ARID4B PE=1 SV=2 Length = 1312
Score = 30.8 bits (68), Expect = 5.8 Identities = 13/35 (37%), Positives = 23/35 (65%) Frame = +1
Query: 205 EDDETEPVYSTLSRKIVEESKKAKQGDQVQAKQNE 309 +DD+T V +L+ K+ E +KAK GD+ +++E Sbjct: 503 KDDDTTRVDESLNIKVEAEEEKAKSGDETNKEEDE 537
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7SHG3 |
Definition |
tr|A7SHG3|A7SHG3_NEMVE Predicted protein OS=Nematostella vectensis |
Align length |
57 |
Score (bit) |
37.0 |
E-value |
0.93 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956358|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_I13, 5' (617 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7SHG3|A7SHG3_NEMVE Predicted protein OS=Nematostella vectens... 37 0.93 tr|B7U343|B7U343_LOXAF Neurofilament medium tail domain (Fragmen... 37 1.2 tr|B0WLU0|B0WLU0_CULQU Lethal(3)malignant brain tumor OS=Culex q... 35 2.7 tr|Q9JLG3|Q9JLG3_CRIGR Niemann-Pick type C1 protein OS=Cricetulu... 35 4.6 tr|Q4W9Q7|Q4W9Q7_ASPFU Putative uncharacterized protein OS=Asper... 35 4.6 tr|B0YEE9|B0YEE9_ASPFC Putative uncharacterized protein OS=Asper... 35 4.6 tr|Q7NBI4|Q7NBI4_MYCGA DnaJ OS=Mycoplasma gallisepticum GN=DanJ ... 34 7.8 tr|Q29GS2|Q29GS2_DROPS GA14699 OS=Drosophila pseudoobscura pseud... 34 7.8 tr|B4NPR0|B4NPR0_DROWI GK18497 OS=Drosophila willistoni GN=GK184... 34 7.8 tr|B4GUV0|B4GUV0_DROPE GL12955 OS=Drosophila persimilis GN=GL129... 34 7.8 tr|A8PT06|A8PT06_MALGO Putative uncharacterized protein OS=Malas... 34 7.8
>tr|A7SHG3|A7SHG3_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g245298 PE=4 SV=1 Length = 1081
Score = 37.0 bits (84), Expect = 0.93 Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Frame = +1
Query: 175 QYRRQYAEPQEDDETEPVYSTLSRKIVEESKKAKQGDQV-QAKQNELQDGMIKAKER 342 Q RR Y+E QE+ E + + R+ ++++++A + D V AK+ EL++G+ +A++R Sbjct: 831 QRRRLYSEVQEEKERIALQAQRQRQELDDARRALEEDTVLMAKERELKEGVREARDR 887
>tr|B7U343|B7U343_LOXAF Neurofilament medium tail domain (Fragment) OS=Loxodonta africana GN=nefm PE=4 SV=1 Length = 547
Score = 36.6 bits (83), Expect = 1.2 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +1
Query: 103 GLKREEHWRESDGDGILRGDFE*GQYRRQYA-EPQEDDETEPVYSTLSRKIVEESKKAKQ 279 G K EE E + +G E G ++ + E +E+ ETE ++ EE K K+ Sbjct: 120 GKKEEEEEEEEEEEGAKSDQAEEGGSEKEVSSEKEEEGETEAEGEGEEAEVKEERKAEKK 179
Query: 280 GDQVQAKQNELQDGMIKAKER 342 G++V AK+ + + ++ E+ Sbjct: 180 GEEVAAKEELVPEAKVEKPEK 200
>tr|B0WLU0|B0WLU0_CULQU Lethal(3)malignant brain tumor OS=Culex quinquefasciatus GN=CpipJ_CPIJ007558 PE=4 SV=1 Length = 937
Score = 35.4 bits (80), Expect = 2.7 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = +1
Query: 187 QYAEPQEDDETEPVYSTLSRKIVEESKKAKQGDQVQAKQNELQDGMIKA 333 Q E +EDDE E V T+ +KIV E ++ K D+ + +L + IK+ Sbjct: 410 QQEEEEEDDEEEEVEETVLQKIVNEEERPKTPDEQKVTLEDLLNEQIKS 458
>tr|Q9JLG3|Q9JLG3_CRIGR Niemann-Pick type C1 protein OS=Cricetulus griseus GN=NPC1 PE=2 SV=1 Length = 1277
Score = 34.7 bits (78), Expect = 4.6 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = -2
Query: 328 LSSHPAIHFALLVPGLPALLSYSPQQFSWIAYYRLALSRHPLEALHIASCIGPTQN 161 LSS PA+H L GL L+ + Q +++ L + R L I C+G T N Sbjct: 751 LSSMPAVHTFSLFAGLAVLIDFLLQITCFVSLLGLDIKRQEKNRLDILCCVGGTDN 806
>tr|Q4W9Q7|Q4W9Q7_ASPFU Putative uncharacterized protein OS=Aspergillus fumigatus GN=AFUA_4G04080 PE=4 SV=1 Length = 521
Score = 34.7 bits (78), Expect = 4.6 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +1
Query: 196 EPQEDDETEPVYSTLSRKIVEE---SKKAKQGDQVQAKQNELQDGMIKAKERR 345 + + DDE E V+ T R +EE +KK K+ ++ + K+ E + M K+K +R Sbjct: 434 DEESDDELEEVHDTRKRVAIEEEKLAKKEKELEETERKKREEEQKMSKSKGKR 486
>tr|B0YEE9|B0YEE9_ASPFC Putative uncharacterized protein OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_098940 PE=4 SV=1 Length = 521
Score = 34.7 bits (78), Expect = 4.6 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Frame = +1
Query: 196 EPQEDDETEPVYSTLSRKIVEE---SKKAKQGDQVQAKQNELQDGMIKAKERR 345 + + DDE E V+ T R +EE +KK K+ ++ + K+ E + M K+K +R Sbjct: 434 DEESDDELEEVHDTRKRVAIEEEKLAKKEKELEETERKKREEEQKMSKSKGKR 486
>tr|Q7NBI4|Q7NBI4_MYCGA DnaJ OS=Mycoplasma gallisepticum GN=DanJ PE=4 SV=1 Length = 298
Score = 33.9 bits (76), Expect = 7.8 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +1
Query: 184 RQYAEPQEDDETEPVYSTLSRKIVEESKKAKQGDQVQAKQNELQDG 321 +QY +PQ D T Y T S KI E +KA Q +A + L +G Sbjct: 58 QQYDQPQYDQHTTNNYQTSSYKITPEQEKAYYQKQTEAFYDHLNNG 103
>tr|Q29GS2|Q29GS2_DROPS GA14699 OS=Drosophila pseudoobscura pseudoobscura GN=GA14699 PE=4 SV=2 Length = 479
Score = 33.9 bits (76), Expect = 7.8 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = +1
Query: 181 RRQYAEPQEDD---ETEPVYSTLSRKIVEESKKAKQGDQVQAKQNELQ 315 + + +E +EDD ++ Y T++ + +SKK+KQ + + KQ ELQ Sbjct: 282 KEEESEQEEDDPNDSSDKAYRTINAAVERDSKKSKQARRKELKQKELQ 329
>tr|B4NPR0|B4NPR0_DROWI GK18497 OS=Drosophila willistoni GN=GK18497 PE=4 SV=1 Length = 1123
Score = 33.9 bits (76), Expect = 7.8 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = +1
Query: 103 GLKR--EEHWRESDGDGILRGDFE*GQYRRQYAEPQEDDETEPVYSTLSRKIVEESKKA 273 GL R +H D DG L GD++ RQ+ D++ VY L ++E++K A Sbjct: 348 GLARLASDHDAGDDNDGSLSGDYQCSMLLRQFLASSPDEQQRRVYLCLLAPLLEQAKDA 406
>tr|B4GUV0|B4GUV0_DROPE GL12955 OS=Drosophila persimilis GN=GL12955 PE=4 SV=1 Length = 479
Score = 33.9 bits (76), Expect = 7.8 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%) Frame = +1
Query: 181 RRQYAEPQEDD---ETEPVYSTLSRKIVEESKKAKQGDQVQAKQNELQ 315 + + +E +EDD ++ Y T++ + +SKK+KQ + + KQ ELQ Sbjct: 282 KEEESEQEEDDPNDSSDKAYRTINAAVERDSKKSKQARRKELKQKELQ 329
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