BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956372|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_J03, 5'
         (586 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5LFX5|KCNU1_MACFA Potassium channel subfamily U member 1 OS=...    32   1.8  
sp|A8MYU2|KCNU1_HUMAN Potassium channel subfamily U member 1 OS=...    32   3.0  
sp|A6LLF1|MURG_THEM4 UDP-N-acetylglucosamine--N-acetylmuramyl-(p...    31   5.2  
sp|P39409|YJJW_ECOLI Uncharacterized protein yjjW OS=Escherichia...    30   6.8  
sp|A1D327|MED16_NEOFI Mediator of RNA polymerase II transcriptio...    30   8.9  
sp|A4D9J5|MED16_ASPFU Mediator of RNA polymerase II transcriptio...    30   8.9  
sp|A1SJG2|FMT_NOCSJ Methionyl-tRNA formyltransferase OS=Nocardio...    30   8.9  

>sp|A5LFX5|KCNU1_MACFA Potassium channel subfamily U member 1
           OS=Macaca fascicularis GN=KCNU1 PE=2 SV=1
          Length = 1149

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 22/67 (32%), Positives = 29/67 (43%)
 Frame = -3

Query: 440 NPRKTTSSLETLLGSKIKKLLCSCALAKPSTTIGFMHSIVPNTASTWNTKTRLTEASPP* 261
           N RK TSS E L G   KK +  C      +   F+ + +   +   NT+      SPP 
Sbjct: 317 NKRKYTSSYEALKG---KKFIVVCGNITVDSVTAFLRNFLRRKSGEINTEIVFLGESPPS 373

Query: 260 LALALIF 240
           L L  IF
Sbjct: 374 LELETIF 380


>sp|A8MYU2|KCNU1_HUMAN Potassium channel subfamily U member 1
           OS=Homo sapiens GN=KCNU1 PE=2 SV=2
          Length = 1149

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -3

Query: 440 NPRKTTSSLETLLGSKIKKLLCSCALAKPSTTIGFMHSIVPNTASTWNTKTRLTEASPP* 261
           N RK TSS E L G   KK +  C      +   F+ + + + +   NT+      +PP 
Sbjct: 317 NKRKYTSSYEALKG---KKFIVVCGNITVDSVTAFLRNFLRDKSGEINTEIVFLGETPPS 373

Query: 260 LALALIF 240
           L L  IF
Sbjct: 374 LELETIF 380


>sp|A6LLF1|MURG_THEM4
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Thermosipho melanesiensis (strain BI429 /
           DSM 12029) GN=murG PE=3 SV=1
          Length = 334

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
 Frame = +1

Query: 112 GIGRAEMFLNCLNQKLAK-MKDADFSMNG---SVRCCRPKCQAMQWT--------NINAN 255
           G G +E FLN L  KLAK MKD  F ++    +++C     +A+ +         ++N  
Sbjct: 184 GSGGSE-FLNELACKLAKKMKDLQFILSTGGKNIKCLEENLRAIDYIENMADYYQSVNCA 242

Query: 256 ASHGGEASVRRVLVFQVLAV 315
            + GG  +V  +L FQV ++
Sbjct: 243 ITRGGATTVSELLYFQVPSI 262


>sp|P39409|YJJW_ECOLI Uncharacterized protein yjjW OS=Escherichia
           coli (strain K12) GN=yjjW PE=3 SV=1
          Length = 287

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 191 MGRCDVAGQNVRQCSGQISMPMLVMGVKLL*GGF*CSKCWQCLEQC 328
           MGRC+  G+ V QC  Q    + ++  K++     C +C  CL++C
Sbjct: 44  MGRCNDCGECVPQCPHQ---ALQIVDGKVVWNAVVCEQCDTCLKRC 86


>sp|A1D327|MED16_NEOFI Mediator of RNA polymerase II transcription
           subunit 16 OS=Neosartorya fischeri (strain ATCC 1020 /
           DSM 3700 / NRRL 181) GN=sin4 PE=3 SV=1
          Length = 955

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 208 CRPKCQAMQWTNINANASHGGEASVR 285
           CRP   A+  TN NANA+  G++S +
Sbjct: 849 CRPAASALPETNANANANQNGKSSTQ 874


>sp|A4D9J5|MED16_ASPFU Mediator of RNA polymerase II transcription
           subunit 16 OS=Aspergillus fumigatus GN=sin4 PE=3 SV=1
          Length = 955

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 208 CRPKCQAMQWTNINANASHGGEASVR 285
           CRP   A+  TN NANA+  G++S +
Sbjct: 849 CRPTASALPETNANANANQNGKSSTQ 874


>sp|A1SJG2|FMT_NOCSJ Methionyl-tRNA formyltransferase
           OS=Nocardioides sp. (strain BAA-499 / JS614) GN=fmt PE=3
           SV=1
          Length = 316

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 11/55 (20%)
 Frame = -1

Query: 289 PALQKLHPHD*HWH*YLSTALPDIL-----------AGNIAPTHSWKNLHLSSLP 158
           P L+  HP D  +   L    PD             A    P H W NLH S+LP
Sbjct: 58  PVLKPAHPKDPEFQEQLRALRPDCCPVVAYGALLPQAALDIPVHGWVNLHFSALP 112

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956372|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_J03, 5'
         (586 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7PL00|B7PL00_IXOSC Antiviral helicase Slh1, putative OS=Ixod...    41   0.044
tr|A1X877|A1X877_SOLLC NRC1 OS=Solanum lycopersicum PE=2 SV=1          37   1.1  
tr|A0L832|A0L832_MAGSM Beta-lactamase domain protein OS=Magnetoc...    35   4.1  

>tr|B7PL00|B7PL00_IXOSC Antiviral helicase Slh1, putative OS=Ixodes
            scapularis GN=IscW_ISCW018611 PE=4 SV=1
          Length = 2143

 Score = 41.2 bits (95), Expect = 0.044
 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
 Frame = +1

Query: 232  QWTNINANASHGGEASVRRVLV------FQVLAVFGTMLCMNPIVVDGLARAQEQRSFLI 393
            QW   NAN++     +VR VL+      F +      +L M+  V  G+ R   ++  ++
Sbjct: 1505 QWLGANANSTFNFHPNVRPVLLELHIQGFNITHNASRLLSMSKPVYQGIMRHSPRKPVIV 1564

Query: 394  FDPSKVSSDEVVLRGLPYTANLGRPSTSPELRLKDDELEEILSVKTQAATQQGIS--ISH 567
            F PS+  +    +  L Y+A+ G+   S  L   +D+L+  L   T    ++ ++  +++
Sbjct: 1565 FVPSRKQTRLTAIDVLTYSASEGQ--ASKFLHCTEDDLKPFLEQITDKTLKETLTNGVAY 1622

Query: 568  LHQ 576
            LH+
Sbjct: 1623 LHE 1625


>tr|A1X877|A1X877_SOLLC NRC1 OS=Solanum lycopersicum PE=2 SV=1
          Length = 888

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
 Frame = +1

Query: 121 RAEMFLNCL-NQKLAKMKDADFSMNGSVRCCRPK------C--QAMQWTNINANASHGGE 273
           +AE +LN L N+ L  +     +++G ++ CR        C  +A    N+      GGE
Sbjct: 449 KAEEYLNELVNRNLVMVMQR--TVDGQIKTCRVHDMLYEFCWQEATTEENLFHEVKFGGE 506

Query: 274 ASVRRVLVFQVLAVFGTMLCMNPIVVDGLAR---AQEQRSFLIFDPSKVSSDEVVLRGLP 444
            SVR V   +        LC++  VV+ +++    +  RSFL F P K+ +   V     
Sbjct: 507 QSVREVSTHR-------RLCIHSSVVEFISKKPSGEHVRSFLCFSPEKIDTPPTV----- 554

Query: 445 YTANLGRPSTSPELRLKDDELEEILSVKTQAATQQGISISHLHQL 579
            +AN+ +    P LR+ D E     S+K     ++   + HL  +
Sbjct: 555 -SANISK--AFPLLRVFDTE-----SIKINRFCKEFFQLYHLRYI 591


>tr|A0L832|A0L832_MAGSM Beta-lactamase domain protein
           OS=Magnetococcus sp. (strain MC-1) GN=Mmc1_1616 PE=4
           SV=1
          Length = 559

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 28/97 (28%), Positives = 44/97 (45%)
 Frame = +1

Query: 238 TNINANASHGGEASVRRVLVFQVLAVFGTMLCMNPIVVDGLARAQEQRSFLIFDPSKVSS 417
           TN++ + S   E+SVR  L  Q+    G ++C        + R Q+     I D +    
Sbjct: 197 TNVDRSGSSRSESSVRPALDEQMARAQGLVVCAT--FSSNIHRIQQ-----IVDSAIAHG 249

Query: 418 DEVVLRGLPYTANLGRPSTSPELRLKDDELEEILSVK 528
            +VVL G    AN+G       +RL  D+L  + S+K
Sbjct: 250 RKVVLNGRSMEANVGVARELGFIRLDGDDLVTVKSIK 286