DK956409 |
Clone id |
TST39A01NGRL0025_K16 |
Library |
TST39 |
Length |
560 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_K16. 5' end sequence. |
Accession |
DK956409 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL840Contig1 |
Sequence |
CTTCGTTTTTCGATACACCCGGTGACACACCTCACTACAAGAAATACAGCTGGCTAATCA CTGCTTTAGCGTAGCTCAGCTTGCTACTTGCTCCTAAGCCTCGCACAGATTGCGCTCTAA TTAAGCTGTTAACTCTGCTAACTACTACTAAATCTTGCACAGCTTGCGCTAATTAGGCTT GCAATCTGCTTCTCCGAGCTACTAAATATGGGATCCCTCATGGCGGGCTGGAATTCTCCC ACTCTCAACAGCAAGCAAGGGGGTTATGCCAGAAGCTCATCGTTTACAAAGTACGAAATA GAGGAATTTAAGAACAAACAGAAACTTGCAGAGGAGGAGCACCACAAGGCCGCTGTGCTT CTTGCTGCAGAGCTCACGCAAGCTCACCAGGATATAAGCATTAAGGTGGATCAGAGAAAA AAGGCAGTCCAGGCCGATGGTGGGGAGCCGTCGAGTGCACCCCTCTCAGTTGAGGAGGAG CTTGAGAGACTGAACTCCTTTAAAGACTGGTGGACGAAAAGCAGCTGGGCATTCTTGAAC GATCCCGCGATGAAGCGAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P45018 |
Definition |
sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase hrpA homolog OS=Haemophilus influenzae |
Align length |
60 |
Score (bit) |
30.8 |
E-value |
4.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NLH4 |
Definition |
tr|A9NLH4|A9NLH4_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
143 |
Score (bit) |
77.8 |
E-value |
4.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956409|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_K16, 5' (560 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NLH4|A9NLH4_PICSI Putative uncharacterized protein OS=Picea... 78 4e-13 tr|A9P036|A9P036_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10 tr|A9NTS3|A9NTS3_PICSI Putative uncharacterized protein OS=Picea... 69 2e-10 tr|A7NTA8|A7NTA8_VITVI Chromosome chr18 scaffold_1, whole genome... 64 7e-09 tr|A9TAF8|A9TAF8_PHYPA Predicted protein OS=Physcomitrella paten... 59 1e-07 tr|Q93WK6|Q93WK6_ARATH Putative uncharacterized protein At1g1953... 54 4e-06 tr|B4YYB7|B4YYB7_THEHA ST225 OS=Thellungiella halophila PE=4 SV=1 54 4e-06 tr|A9TIZ0|A9TIZ0_PHYPA Predicted protein OS=Physcomitrella paten... 52 2e-05 tr|Q94GF4|Q94GF4_ORYSA Putative uncharacterized protein OJ1111_B... 52 3e-05 tr|Q10B90|Q10B90_ORYSJ Os03g0826800 protein OS=Oryza sativa subs... 52 3e-05 tr|A2XNK6|A2XNK6_ORYSI Putative uncharacterized protein OS=Oryza... 52 3e-05 tr|A7R3K2|A7R3K2_VITVI Chromosome undetermined scaffold_533, who... 49 2e-04 tr|Q8W1E8|Q8W1E8_ARATH At2g17710/T17A5.17 (Putative uncharacteri... 48 3e-04 tr|Q8LGJ0|Q8LGJ0_ARATH Putative uncharacterized protein OS=Arabi... 48 3e-04 tr|B5TV72|B5TV72_CAMSI Putative uncharacterized protein OS=Camel... 47 5e-04 tr|Q7XSQ4|Q7XSQ4_ORYSJ Os04g0560700 protein OS=Oryza sativa subs... 47 0.001 tr|Q01H85|Q01H85_ORYSA B0103C08-B0602B01.18 protein OS=Oryza sat... 47 0.001 tr|A2XWE4|A2XWE4_ORYSI Putative uncharacterized protein OS=Oryza... 47 0.001 tr|Q9LN41|Q9LN41_ARATH F18O14.29 OS=Arabidopsis thaliana PE=4 SV=1 45 0.003 tr|B4FC09|B4FC09_MAIZE Putative uncharacterized protein OS=Zea m... 44 0.005 tr|B6WGM4|B6WGM4_9BACE Putative uncharacterized protein OS=Bacte... 40 0.066 tr|Q94GF5|Q94GF5_ORYSA Putative uncharacterized protein OJ1111_B... 39 0.25 tr|Q10B88|Q10B88_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 39 0.25 tr|Q10B87|Q10B87_ORYSJ Expressed protein (Putative uncharacteriz... 39 0.25 tr|A2XNK7|A2XNK7_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.25 tr|Q10B89|Q10B89_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 36 1.6 tr|Q01AU0|Q01AU0_OSTTA Chromosome 04 contig 1, DNA sequence OS=O... 36 1.6 tr|A4U0E7|A4U0E7_9PROT Membrane protein OS=Magnetospirillum gryp... 35 2.1 tr|B4JGP4|B4JGP4_DROGR GH18884 OS=Drosophila grimshawi GN=GH1888... 35 2.1 tr|B1WNK1|B1WNK1_CYAA5 Putative uncharacterized protein OS=Cyano... 35 2.8
>tr|A9NLH4|A9NLH4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 159
Score = 77.8 bits (190), Expect = 4e-13 Identities = 50/143 (34%), Positives = 69/143 (48%), Gaps = 28/143 (19%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYARSSSFTKYEIEEFKNKQKLAEEEHHKAAVLLAAELTQAH 387 MGSLMAGW+SPT +S +G + R+ S T EIE F ++ A+EEH KA A+ A Sbjct: 1 MGSLMAGWDSPTSSSGKGRFERNKSLTNEEIEAFWKIKRKAQEEHLKAVAQAQAQ-GHAT 59
Query: 388 QDISIKVD---------------QRKKAVQADGGEPSSAPLS-------------VEEEL 483 D I D RK A G +S S +++L Sbjct: 60 SDFQIPTDNNIEVSETALSSGAIHRKLAANRPVGLDTSRSFSGYDTSPVAADSQFAKDDL 119
Query: 484 ERLNSFKDWWTKSSWAFLNDPAM 552 + L + K WWT+S+WAFLN+P + Sbjct: 120 DNLRNAKAWWTRSNWAFLNEPPL 142
>tr|A9P036|A9P036_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 152
Score = 68.6 bits (166), Expect = 2e-10 Identities = 40/115 (34%), Positives = 66/115 (57%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYARSSSFTKYEIEEFKNKQKLAEEEHHKAAVLLAAELTQAH 387 MGSLMAGW+SP ++KQ ++S T+ EI + +++ EEEH +A AA + Sbjct: 1 MGSLMAGWDSPIRDAKQVRLHFNNSMTREEIANYWRAKRIIEEEHLLSAFKSAARIKA-- 58
Query: 388 QDISIKVDQRKKAVQADGGEPSSAPLSVEEELERLNSFKDWWTKSSWAFLNDPAM 552 + + + +R + A+ +P S ++E R+ KDWWTKS++A+LN P + Sbjct: 59 RTFTAEDYKRFEDSLAEDEKPQMKNTSYKDEETRI-GIKDWWTKSNYAYLNQPPL 112
>tr|A9NTS3|A9NTS3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 152
Score = 68.6 bits (166), Expect = 2e-10 Identities = 40/115 (34%), Positives = 66/115 (57%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYARSSSFTKYEIEEFKNKQKLAEEEHHKAAVLLAAELTQAH 387 MGSLMAGW+SP ++KQ ++S T+ EI + +++ EEEH +A AA + Sbjct: 1 MGSLMAGWDSPIRDAKQVRLHFNNSMTREEIANYWRAKRIIEEEHLLSAFKSAARIKA-- 58
Query: 388 QDISIKVDQRKKAVQADGGEPSSAPLSVEEELERLNSFKDWWTKSSWAFLNDPAM 552 + + + +R + A+ +P S ++E R+ KDWWTKS++A+LN P + Sbjct: 59 RTFTAEDYKRFEDSLAEDEKPQMKNTSYKDEETRI-GIKDWWTKSNYAYLNQPPL 112
>tr|A7NTA8|A7NTA8_VITVI Chromosome chr18 scaffold_1, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00014595001 PE=4 SV=1 Length = 147
Score = 63.5 bits (153), Expect = 7e-09 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 12/121 (9%) Frame = +1
Query: 220 MAGWNSPTLNSKQGGYARSSSFTKYEIEEFKNKQKLAEEEHHKAAVLLAAELTQAHQDIS 399 MAGW+S + K Y R+ SFTK EI+ + +K EEEH KA ++ + Q+ + Sbjct: 1 MAGWDSRVRDPKAETYQRNRSFTKGEIDAYWRTKKKIEEEHLKA----ISDTSDGSQEST 56
Query: 400 IKVDQRKKAVQADGGEPSSAPLSVEEE------------LERLNSFKDWWTKSSWAFLND 543 K + +Q SS PL+ +E LE+L WWT+S+WA+LN+ Sbjct: 57 FKEESAGIKLQ----RSSSLPLANTKERFMENIIETGTDLEKLLQKNGWWTRSNWAYLNE 112
Query: 544 P 546 P Sbjct: 113 P 113
>tr|A9TAF8|A9TAF8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_107759 PE=4 SV=1 Length = 125
Score = 59.3 bits (142), Expect = 1e-07 Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (1%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYARSSSFTKYEIEEFKNKQKLAEEEHHKAAVLLAAELTQAH 387 MGSLMAGW++ N ++ +S TK +IEE+ K++ A EEH + A Sbjct: 1 MGSLMAGWDNNPWNEEKVLTRSRTSLTKEKIEEYWRKRQQAMEEHLREA----------- 49
Query: 388 QDISIKVDQRKKAVQADGGEPS-SAPLSVEEELE-RLNSFKDWWTKSSWAFLNDPAMK 555 + A G+P+ P +V EE+E + DWW +S+WAFLN P K Sbjct: 50 -----SAQKSPNESGATSGKPNIDIPQTVVEEVELPMAMSPDWWMRSNWAFLNCPPEK 102
>tr|Q93WK6|Q93WK6_ARATH Putative uncharacterized protein At1g19530 (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=At1g19530 PE=2 SV=1 Length = 117
Score = 54.3 bits (129), Expect = 4e-06 Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 1/114 (0%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYARSSSFTKYEIEEF-KNKQKLAEEEHHKAAVLLAAELTQA 384 MGSLM+GW+S + K R S T+ EI+ F K K+K EEEH +A L + Sbjct: 1 MGSLMSGWDSRVRDPKS--VRRCKSLTREEIDTFWKTKKKNEEEEHVQAFSKLVTQ---- 54
Query: 385 HQDISIKVDQRKKAVQADGGEPSSAPLSVEEELERLNSFKDWWTKSSWAFLNDP 546 + Q+ E S V++ E + WW K+ WAFLN+P Sbjct: 55 ------------EGAQSQAKEKKS----VDDLFENQSKSSGWWRKTYWAFLNEP 92
>tr|B4YYB7|B4YYB7_THEHA ST225 OS=Thellungiella halophila PE=4 SV=1 Length = 116
Score = 54.3 bits (129), Expect = 4e-06 Identities = 33/113 (29%), Positives = 51/113 (45%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYARSSSFTKYEIEEFKNKQKLAEEEHHKAAVLLAAELTQAH 387 MGSLM+GW+SP + R S T+ +I+ F ++K EEEH +A L + Sbjct: 1 MGSLMSGWDSPPADPNS--VKRCKSLTREDIDAFWKEKKKNEEEHVQAISKLVVQEVAES 58
Query: 388 QDISIKVDQRKKAVQADGGEPSSAPLSVEEELERLNSFKDWWTKSSWAFLNDP 546 Q K++ ++ E + WW +S+WAFLN+P Sbjct: 59 QAQEEKIE--------------------DDPYENQSKKSGWWQRSTWAFLNEP 91
>tr|A9TIZ0|A9TIZ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_170328 PE=4 SV=1 Length = 137
Score = 52.4 bits (124), Expect = 2e-05 Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 1/114 (0%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYARSSSFTKYEIEEF-KNKQKLAEEEHHKAAVLLAAELTQA 384 MGSLM GW+ L+ ++ +S T EIE F ++KQ+ E K A L A Sbjct: 1 MGSLMPGWDI-LLDPQKVMKRSKTSMTNEEIEAFWRHKQQEIELHAKKDDDRNANSLLNA 59
Query: 385 HQDISIKVDQRKKAVQADGGEPSSAPLSVEEELERLNSFKDWWTKSSWAFLNDP 546 ++ Q V ADG A V E + L S +DWWT+S+WA+LN P Sbjct: 60 NE-----TKQTTTVVTADGATTHEA---VVELTQPLASSRDWWTRSNWAYLNAP 105
>tr|Q94GF4|Q94GF4_ORYSA Putative uncharacterized protein OJ1111_B11.6 (Putative uncharacterized protein OSJNBa0010E04.8) OS=Oryza sativa GN=OJ1111_B11.6 PE=4 SV=1 Length = 143
Score = 51.6 bits (122), Expect = 3e-05 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 9/122 (7%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYAR-SSSFTKYEIEEFKNKQ--------KLAEEEHHKAAVL 360 MGSLMAGW+SP L + AR + S T+ E+E F + L A Sbjct: 1 MGSLMAGWDSPVLGDENRVLARRNKSLTREEVEAFWKQHGGEMMSGSPLGSPAAGGMARS 60
Query: 361 LAAELTQAHQDISIKVDQRKKAVQADGGEPSSAPLSVEEELERLNSFKDWWTKSSWAFLN 540 ++AH S + + A + +G P + E + DWWT+S+WAFLN Sbjct: 61 APVSRSKAHAS-SPRGGRIDPATRVEGFFPHDDAAAAESP----SKSHDWWTRSNWAFLN 115
Query: 541 DP 546 +P Sbjct: 116 EP 117
>tr|Q10B90|Q10B90_ORYSJ Os03g0826800 protein OS=Oryza sativa subsp. japonica GN=Os03g0826800 PE=2 SV=1 Length = 143
Score = 51.6 bits (122), Expect = 3e-05 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 9/122 (7%) Frame = +1
Query: 208 MGSLMAGWNSPTLNSKQGGYAR-SSSFTKYEIEEFKNKQ--------KLAEEEHHKAAVL 360 MGSLMAGW+SP L + AR + S T+ E+E F + L A Sbjct: 1 MGSLMAGWDSPVLGDENRVLARRNKSLTREEVEAFWKQHGGEMMSGSPLGSPAAGGMARS 60
Query: 361 LAAELTQAHQDISIKVDQRKKAVQADGGEPSSAPLSVEEELERLNSFKDWWTKSSWAFLN 540 ++AH S + + A + +G P + E + DWWT+S+WAFLN Sbjct: 61 APVSRSKAHAS-SPRGGRIDPATRVEGFFPHDDAAAAESP----SKSHDWWTRSNWAFLN 115
Query: 541 DP 546 +P Sbjct: 116 EP 117
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