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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956436
Clone id TST39A01NGRL0025_L19
Library
Length 472
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_L19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATAAGATGTCGTGCTGCAATGGTAACTGTG
GGTGCGGCGCAAACTGTCAATGCGCTTGCGGCTGCGAGGGGTGCGGCCGAACTGACAGCC
TTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAGTGCCACTGCCTCCGTCTGCCCCAGCT
ATGAAAGGGCTCTAGGTTTCGGAGTGGAGAACATCTCTGGGTATCTTGGCTCTCCTACTT
CTTGTTTCCCTCTCAACTGAGCTTAAGGTAGCCTAGTACAAGGGGTTGCCTTAATAACAC
CAAAAATAATGTATTTGTATTTAGTTAATAGTCAGTCGTGCAATTAACATCCATGGATCG
CTTGTACATAGTATGCTCACCTTTGTAATCTTGGAATTTGGTAATGATAATGATAATGGC
TTAAGCCAAGCCATAAAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 75
Score (bit) 35.0
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956436|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_L19, 5'
         (441 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg...    35   0.14 
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu...    34   0.23 
sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapien...    33   0.68 
sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis famil...    33   0.68 
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri...    29   7.5  

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
           norvegicus GN=Gata4 PE=1 SV=1
          Length = 440

 Score = 35.0 bits (79), Expect = 0.14
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP-- 198

Query: 82  H*QFAPHPQLPLQHD 38
               A HP L +  D
Sbjct: 199 ----ARHPNLDMFDD 209


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=1 SV=3
          Length = 440

 Score = 34.3 bits (77), Expect = 0.23
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 82  H 80
           H
Sbjct: 201 H 201


>sp|P43694|GATA4_HUMAN Transcription factor GATA-4 OS=Homo sapiens
           GN=GATA4 PE=1 SV=2
          Length = 442

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|Q0Q0E4|GATA4_CANFA Transcription factor GATA-4 OS=Canis
           familiaris GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacterium
           populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
           GN=glmM PE=3 SV=1
          Length = 446

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 155 CHCLR-LPQL*KGSRFRSGEHL 217
           CHC   LPQ+ K  RFRSGE L
Sbjct: 364 CHCFEPLPQILKNVRFRSGEPL 385
tr_hit_id B8A9Y1
Definition tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 23
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956436|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_L19, 5'
         (441 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus muscul...    34   3.2  
tr|Q8MIM5|Q8MIM5_PIG Transcription factor GATA-4 OS=Sus scrofa P...    33   9.2  
tr|Q5IFM8|Q5IFM8_HUMAN GATA binding protein 4 OS=Homo sapiens GN...    33   9.2  
tr|Q16365|Q16365_HUMAN GATA-4 transcription factor OS=Homo sapie...    33   9.2  
tr|B7ZKX0|B7ZKX0_HUMAN GATA binding protein 4 OS=Homo sapiens GN...    33   9.2  

>tr|B8A9Y1|B8A9Y1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05418 PE=4 SV=1
          Length = 502

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -3

Query: 103 HPSQPQAH*QFAPHPQLPLQHDI 35
           HP QP  H Q  PHPQLP QHD+
Sbjct: 220 HPPQPLPHWQLEPHPQLPPQHDM 242


>tr|Q8VI87|Q8VI87_MOUSE Transcription factor GATA-4 OS=Mus musculus
           GN=Gata4 PE=2 SV=1
          Length = 442

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G P +   +S+P P  ++ +G + A A       FDS  L   P  + P  
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGR 200

Query: 82  H 80
           H
Sbjct: 201 H 201


>tr|Q8MIM5|Q8MIM5_PIG Transcription factor GATA-4 OS=Sus scrofa PE=2
           SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>tr|Q5IFM8|Q5IFM8_HUMAN GATA binding protein 4 OS=Homo sapiens
           GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210


>tr|Q16365|Q16365_HUMAN GATA-4 transcription factor OS=Homo sapiens
           PE=2 SV=1
          Length = 439

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 138 AGLAGREQYGRAAFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPGA 197

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 198 R-----HPNLDMFDD 207


>tr|B7ZKX0|B7ZKX0_HUMAN GATA binding protein 4 OS=Homo sapiens
           GN=GATA4 PE=2 SV=1
          Length = 442

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 262 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPSQPQA 83
           A L G+++ G   +   +S+P P  ++ +G + A A       FDS  L   P  + P A
Sbjct: 141 AGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANPAA 200

Query: 82  H*QFAPHPQLPLQHD 38
                 HP L +  D
Sbjct: 201 R-----HPNLDMFDD 210