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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956437
Clone id TST39A01NGRL0025_L20
Library
Length 479
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_L20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCTTCGGTGGCAGCAAAGCAGCCGGCTCGGCCTCACAAGTTGCCTGCACATTCTAAGGCT
GAAGATGAAGAACTTGCATCATTGCACGCAGAGATGGCTTTGTGAACCACTGAGTGCAAA
GTGCAAAGCTGGTATGTGTTTTGGATGGTTGATTCTTGCCCATTTCCAGATGCTGTTCAA
CAGTTGGCGCTTCATGCATATATTGTTTACATACCTTCCAAGATGTGTGTCCATAGCCCA
CTTTTGGGTGATAAGCCTTCGTAGTGAAGTGTAATTGCTTTATTGCCATGCTGGATCCAC
CACAAATATTCTGAAGCCTGCTATGGTGACTGGATGTATGGAAAAGTGGGCTATCATTAT
GCGATACTAAATATGTTGGAGCTCAGGTAGGAGATCCACTCTCTACCATATTGTTTGTAA
AGATCTTTGTTAGTCTGGGACCTCTTCATTCATGTGTTTAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6BDH1
Definition sp|Q6BDH1|MATK_PINSI Maturase K OS=Pinus sibirica
Align length 76
Score (bit) 33.5
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956437|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_L20, 5'
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6BDH1|MATK_PINSI Maturase K OS=Pinus sibirica GN=matK PE=3 SV=1    33   0.45 
sp|Q85X50|MATK_PINKO Maturase K OS=Pinus koraiensis GN=matK PE=3...    33   0.59 
sp|Q6BDJ4|MATK_PINCE Maturase K OS=Pinus cembra GN=matK PE=3 SV=1      33   0.59 
sp|Q6BDH3|MATK_PINPU Maturase K OS=Pinus pumila GN=matK PE=3 SV=1      32   1.0  
sp|Q9MV59|MATK_PINAR Maturase K OS=Pinus armandii GN=matK PE=3 SV=1    32   1.3  
sp|Q8HQR0|MATK_PINPR Maturase K OS=Pinus parviflora GN=matK PE=3...    31   2.2  
sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aerugi...    30   5.0  
sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aerugi...    30   5.0  
sp|P07720|POLG_TBEVS Genome polyprotein OS=Tick-borne encephalit...    29   8.5  
sp|Q02DZ0|BETA_PSEAB Choline dehydrogenase OS=Pseudomonas aerugi...    29   8.6  

>sp|Q6BDH1|MATK_PINSI Maturase K OS=Pinus sibirica GN=matK PE=3 SV=1
          Length = 515

 Score = 33.5 bits (75), Expect = 0.45
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -1

Query: 261 RRLITQKWAMDTHLGRYVNNICM--KRQLLNSIW--KWARINHPKHIPALHFALSGSQSH 94
           R L  + +   TH  R + +I +  +R  L SIW  K  +IN+ ++      A+ G+  H
Sbjct: 232 RSLAHRPFPQRTHFHRKIKHIIIFSRRNSLKSIWLLKDPKINYVRYGERSIIAIKGT--H 289

Query: 93  LCVQ*CKFFIFSLRMC 46
           L V+ C++++   R C
Sbjct: 290 LLVKKCRYYLLLFRQC 305


>sp|Q85X50|MATK_PINKO Maturase K OS=Pinus koraiensis GN=matK PE=3
           SV=1
          Length = 515

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -1

Query: 261 RRLITQKWAMDTHLGRYVNNICM--KRQLLNSIW--KWARINHPKHIPALHFALSGSQSH 94
           R L  + +   TH  R + +I +  +R  L SIW  K  +IN+ ++      A+ G+  H
Sbjct: 232 RSLSHRPFPQRTHFHRKIKHIIIFSRRNSLKSIWLLKDPKINYVRYGERSIIAIKGT--H 289

Query: 93  LCVQ*CKFFIFSLRMC 46
           L V+ C++++   R C
Sbjct: 290 LLVKKCRYYLLLFRQC 305


>sp|Q6BDJ4|MATK_PINCE Maturase K OS=Pinus cembra GN=matK PE=3 SV=1
          Length = 515

 Score = 33.1 bits (74), Expect = 0.59
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -1

Query: 261 RRLITQKWAMDTHLGRYVNNICM--KRQLLNSIW--KWARINHPKHIPALHFALSGSQSH 94
           R L  + +   TH  R + +I +  +R  L SIW  K  +IN+ ++      A+ G+  H
Sbjct: 232 RSLAHRPFPHGTHFHRKIKHIIIFSRRNSLKSIWLLKDPKINYVRYGERSIIAIKGT--H 289

Query: 93  LCVQ*CKFFIFSLRMC 46
           L V+ C++++   R C
Sbjct: 290 LLVKKCRYYLLLFRQC 305


>sp|Q6BDH3|MATK_PINPU Maturase K OS=Pinus pumila GN=matK PE=3 SV=1
          Length = 515

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = -1

Query: 228 THLGRYVNNICM--KRQLLNSIW--KWARINHPKHIPALHFALSGSQSHLCVQ*CKFFIF 61
           TH  R + +I +  +R  L SIW  K  +IN+ ++      A+ G+  HL V+ C++++ 
Sbjct: 243 THFHRKIKHIIIFSRRNSLKSIWLLKDPKINYVRYGERSIIAIKGT--HLLVKKCRYYLL 300

Query: 60  SLRMC 46
             R C
Sbjct: 301 LFRQC 305


>sp|Q9MV59|MATK_PINAR Maturase K OS=Pinus armandii GN=matK PE=3 SV=1
          Length = 515

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -1

Query: 261 RRLITQKWAMDTHLGRYVNNICM--KRQLLNSIW--KWARINHPKHIPALHFALSGSQSH 94
           R L  + +   TH  R + +I +  +R  L SIW  K  +IN+ ++      A+ G+  H
Sbjct: 232 RSLSHRPFPQRTHFHRKIKHIIIFSRRNSLKSIWLLKDPKINYVRYGERSIIAIKGT--H 289

Query: 93  LCVQ*CKFFIFSLRMC 46
           L ++ C++++   R C
Sbjct: 290 LLLKKCRYYLLLFRQC 305


>sp|Q8HQR0|MATK_PINPR Maturase K OS=Pinus parviflora GN=matK PE=3
           SV=1
          Length = 513

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -1

Query: 261 RRLITQKWAMDTHLGRYVNNICM--KRQLLNSIW--KWARINHPKHIPALHFALSGSQSH 94
           R L  + +   TH  R + +I +  +R  L SIW  K  +I++ ++      A+ G+  H
Sbjct: 230 RSLSHRPFPQRTHFHRKIKHIIIFSRRNSLKSIWLLKDPKIHYVRYGERSIIAIKGT--H 287

Query: 93  LCVQ*CKFFIFSLRMC 46
           L V+ C++++   R C
Sbjct: 288 LLVKKCRYYLLLFRQC 303


>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas
           aeruginosa GN=betA PE=3 SV=1
          Length = 561

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
 Frame = -3

Query: 433 LTKIFTNNMVESGSPT*APTYLVSHNDSPLFHTSSHHSRLQNICGGSSMAIKQLHFTTKA 254
           +T   ++ ++ SG      +YLV + D+P+   ++H  R   +C G+  + + L      
Sbjct: 219 VTHALSDRILFSGKRAIGVSYLVGNGDNPV---TAHARREVLVCSGAIASPQLLQ----- 270

Query: 253 YHPKVGYGHTSWKVCKQYMHEAPTV----EQHLEMGKNQPSKTHTSFALCTQWFTKPSLR 86
               VG       +    +H+ P V    + HLE+      K   S    T+W+ +P++ 
Sbjct: 271 -RSGVGPAALLRDLDIPVVHDLPGVGANLQDHLELYLQYACKQPVSIYPATKWWNQPAIG 329

Query: 85  A 83
           A
Sbjct: 330 A 330


>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas
           aeruginosa (strain PA7) GN=betA PE=3 SV=1
          Length = 561

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
 Frame = -3

Query: 433 LTKIFTNNMVESGSPT*APTYLVSHNDSPLFHTSSHHSRLQNICGGSSMAIKQLHFTTKA 254
           +T   ++ ++ SG      +YLV + D+P+   ++H  R   +C G+  + + L      
Sbjct: 219 VTHALSDRILFSGKRAIGVSYLVGNGDNPV---TAHARREVLVCSGAIASPQLLQ----- 270

Query: 253 YHPKVGYGHTSWKVCKQYMHEAPTV----EQHLEMGKNQPSKTHTSFALCTQWFTKPSLR 86
               VG       +    +H+ P V    + HLE+      K   S    T+W+ +P++ 
Sbjct: 271 -RSGVGPAALLRDLDIPVVHDLPGVGANLQDHLELYLQYACKQPVSIYPATKWWNQPAIG 329

Query: 85  A 83
           A
Sbjct: 330 A 330


>sp|P07720|POLG_TBEVS Genome polyprotein OS=Tick-borne encephalitis
            virus Far Eastern subtype (strain Sofjin) PE=1 SV=3
          Length = 3412

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +1

Query: 79   SLHAEMAL*TTECKVQSWYVFWMVDSCPFPDAVQQLALHAYIVYIP-SKMCVHSPLLGDK 255
            S+HA  A  TTE  +  W   W++D+ PF  + +++A    + Y+P S   + S L+G K
Sbjct: 3306 SIHASGAWMTTEDMLDVWNRVWILDN-PFMHSKEKIAEWRDVPYLPKSHDMLCSSLVGRK 3364


>sp|Q02DZ0|BETA_PSEAB Choline dehydrogenase OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=betA PE=3 SV=1
          Length = 561

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
 Frame = -3

Query: 433 LTKIFTNNMVESGSPT*APTYLVSHNDSPLFHTSSHHSRLQNICGGSSMAIKQLHFTTKA 254
           +T   ++ ++ SG      +YLV + D+P    ++H  R   +C G+  + + L      
Sbjct: 219 VTHALSDRILFSGKRAIGVSYLVGNGDNP---ATAHARREVLVCSGAIASPQLLQ----- 270

Query: 253 YHPKVGYGHTSWKVCKQYMHEAPTV----EQHLEMGKNQPSKTHTSFALCTQWFTKPSLR 86
               VG       +    +H+ P V    + HLE+      K   S    T+W+ +P++ 
Sbjct: 271 -RSGVGPAALLRDLDIPAVHDLPGVGANLQDHLELYLQYACKQPVSIYPATKWWNQPAIG 329

Query: 85  A 83
           A
Sbjct: 330 A 330
tr_hit_id A5B271
Definition tr|A5B271|A5B271_VITVI Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgun sequence) OS=Vitis vinifera
Align length 31
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956437|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_L20, 5'
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B271|A5B271_VITVI Putative uncharacterized protein (Chromos...    38   0.29 
tr|Q9SZE4|Q9SZE4_ARATH Putative uncharacterized protein F19B15.1...    37   0.49 
tr|Q8L9C3|Q8L9C3_ARATH Copia-like retroelement pol polyprotein O...    37   0.49 
tr|Q3E9U7|Q3E9U7_ARATH Uncharacterized protein At4g29160.2 OS=Ar...    37   0.49 
tr|B6TIJ7|B6TIJ7_MAIZE Charged multivesicular body protein 4b OS...    37   0.64 
tr|B4F8J0|B4F8J0_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.64 
tr|B4F8L9|B4F8L9_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.1  
tr|B4FNG0|B4FNG0_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.4  
tr|B4FGC0|B4FGC0_MAIZE Charged multivesicular body protein 4b OS...    35   1.4  
tr|A5BR24|A5BR24_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A7XR98|A7XR98_PINLA Maturase K (Fragment) OS=Pinus lambertian...    34   3.2  
tr|A6CW76|A6CW76_9VIBR Putative short chain dehydrogenase OS=Vib...    34   4.1  
tr|Q7YND3|Q7YND3_9CONI Maturase K (Fragment) OS=Pinus pinceana G...    33   5.4  
tr|Q7Y6S7|Q7Y6S7_PINED Maturase K (Fragment) OS=Pinus edulis GN=...    33   5.4  
tr|Q0F1I7|Q0F1I7_9PROT HD domain protein OS=Mariprofundus ferroo...    33   7.0  
tr|Q9TJJ7|Q9TJJ7_PINCE Maturase K (Fragment) OS=Pinus cembra GN=...    33   7.0  
tr|Q9TJJ6|Q9TJJ6_PINPU Maturase K (Fragment) OS=Pinus pumila GN=...    33   7.0  
tr|Q9TJJ4|Q9TJJ4_PINST Maturase K (Fragment) OS=Pinus strobus GN...    33   7.0  
tr|Q9TJJ3|Q9TJJ3_PINMO Maturase K (Fragment) OS=Pinus monticola ...    33   7.0  
tr|Q9TJJ1|Q9TJJ1_PINWA Maturase K (Fragment) OS=Pinus wallichian...    33   7.0  
tr|Q9TJJ0|Q9TJJ0_9CONI Maturase K (Fragment) OS=Pinus kwangtunge...    33   7.0  
tr|Q9TJI8|Q9TJI8_PINAR Maturase K (Fragment) OS=Pinus armandii G...    33   7.0  
tr|Q8MEW3|Q8MEW3_9CONI Maturase K OS=Pinus morrisonicola GN=matK...    33   7.0  
tr|Q6BDJ0|Q6BDJ0_PINAR Maturase K OS=Pinus armandii var. armandi...    33   7.0  
tr|Q6BDI5|Q6BDI5_9CONI Maturase K OS=Pinus fenzeliana GN=matK PE...    33   7.0  
tr|Q5J6E9|Q5J6E9_PINST Maturase K (Fragment) OS=Pinus strobus GN...    33   7.0  
tr|Q5J6E8|Q5J6E8_9CONI Maturase K (Fragment) OS=Pinus chiapensis...    33   7.0  
tr|Q5J6E7|Q5J6E7_9CONI Maturase K (Fragment) OS=Pinus ayacahuite...    33   7.0  
tr|Q5J6E6|Q5J6E6_9CONI Maturase K (Fragment) OS=Pinus flexilis G...    33   7.0  
tr|Q5J6E5|Q5J6E5_PINMO Maturase K (Fragment) OS=Pinus monticola ...    33   7.0  

>tr|A5B271|A5B271_VITVI Putative uncharacterized protein (Chromosome
           chr9 scaffold_7, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00034232001 PE=4 SV=1
          Length = 220

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +1

Query: 10  AAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           AA+QPARP   P  S AED+ELA+L AE+AL
Sbjct: 192 AARQPARP--APQKSTAEDDELAALQAELAL 220


>tr|Q9SZE4|Q9SZE4_ARATH Putative uncharacterized protein F19B15.190
           (Putative uncharacterized protein At4g29160; F19B15.190)
           (Putative uncharacterized protein AT4g29160)
           OS=Arabidopsis thaliana GN=F19B15.190 PE=2 SV=1
          Length = 219

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   PSVAAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           P  A +QPARP  +P    AE+EELA+L AEMAL
Sbjct: 188 PVPAGRQPARP--VPQKRTAEEEELAALQAEMAL 219


>tr|Q8L9C3|Q8L9C3_ARATH Copia-like retroelement pol polyprotein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 218

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   PSVAAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           P  A +QPARP  +P    AE+EELA+L AEMAL
Sbjct: 187 PVPAGRQPARP--VPQKRTAEEEELAALQAEMAL 218


>tr|Q3E9U7|Q3E9U7_ARATH Uncharacterized protein At4g29160.2
           OS=Arabidopsis thaliana GN=At4g29160 PE=4 SV=1
          Length = 192

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +1

Query: 1   PSVAAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           P  A +QPARP  +P    AE+EELA+L AEMAL
Sbjct: 161 PVPAGRQPARP--VPQKRTAEEEELAALQAEMAL 192


>tr|B6TIJ7|B6TIJ7_MAIZE Charged multivesicular body protein 4b
           OS=Zea mays PE=2 SV=1
          Length = 222

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +1

Query: 10  AAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           A KQPARP   P  + AED+ELA+L AEMAL
Sbjct: 194 ANKQPARP--APQKATAEDDELAALQAEMAL 222


>tr|B4F8J0|B4F8J0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 196

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +1

Query: 10  AAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           A KQPARP   P  + AED+ELA+L AEMAL
Sbjct: 168 ANKQPARP--APQKATAEDDELAALQAEMAL 196


>tr|B4F8L9|B4F8L9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 222

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 19/29 (65%), Positives = 22/29 (75%)
 Frame = +1

Query: 16  KQPARPHKLPAHSKAEDEELASLHAEMAL 102
           KQPARP   P  + AED+ELA+L AEMAL
Sbjct: 196 KQPARP--APQKATAEDDELAALQAEMAL 222


>tr|B4FNG0|B4FNG0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 251

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = +1

Query: 10  AAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           A KQPARP   P    AED+ELA+L AEMAL
Sbjct: 223 ANKQPARP--APQKVTAEDDELAALQAEMAL 251


>tr|B4FGC0|B4FGC0_MAIZE Charged multivesicular body protein 4b
           OS=Zea mays PE=2 SV=1
          Length = 222

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/31 (64%), Positives = 22/31 (70%)
 Frame = +1

Query: 10  AAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           A KQPARP   P    AED+ELA+L AEMAL
Sbjct: 194 ANKQPARP--APQKVTAEDDELAALQAEMAL 222


>tr|A5BR24|A5BR24_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026042 PE=4 SV=1
          Length = 216

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = +1

Query: 1   PSVAAKQPARPHKLPAHSKAEDEELASLHAEMAL 102
           P  A + PARP   P  + AED+ELA+L AEMAL
Sbjct: 185 PIPAGRVPARP--APQRNTAEDDELAALQAEMAL 216