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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956442
Clone id TST39A01NGRL0025_M01
Library
Length 664
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_M01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCTTTCAAGGATTCAAGTCGGAAGTTTCCAGCTCAGGTTCGATTTCGCATCCAGAAAGA
CTGCATGCCTCTGGATGAGGGTGCTTTCAAGATTGCCATAAAGGATAACTATGTCCGTGC
AAATAGGTTCAAGTGTGAACTGAATTCAGAACAGGTTGGTAGATTGATAAAGCTCTTCAG
GCCCCTGGACTCCAGAGGTTTGCCAGAGCCAAAGCCTTCTAAGGAGGCAAAGAAAGATTT
CACTCCAAAAGGCAAGTTGCCACGGGGGCCGCCACCTCGGTCTCTGCGCAACAGGGGGCC
TCCACCTCGTTTTTCAGGTCCTGCTCCTCCCAGAGAACGAGTCTACAAGGACTATGCGCC
GCAGTACTCTAGGGAGCGCCATGCTTCAGAAATTATCCCCCCTAGCTATGCCCTTGTTCC
AGATGTGGCCCATGCAGAAGCAGAGTTATTAAGGCAGAGGCACCTCAGACAAGTCCAAGA
AGAGGCTCTTGACAGGAGGGCTTATCTACTCGATCCTGTGGTTGAAGCTTCAATTGCTCG
TAAACGGTACTTGGAGGATGTTTATTTGGCGGAACAGCAAGCCTTGGCTAANAGGCCTCT
TTTACCTGAAGTTTACAGAGATTTGGAGTACCAAAGAGAGGCCCCATATCGGGGATATGC
AGAT
■■Homology search results ■■ -
sp_hit_id P37707
Definition sp|P37707|B2_DAUCA B2 protein OS=Daucus carota
Align length 52
Score (bit) 35.4
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956442|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_M01, 5'
         (664 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1               35   0.27 
sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A OS=Mycobac...    35   0.47 
sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus GN...    32   2.3  
sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens GN...    32   3.9  
sp|A0LV02|CNPD_ACIC1 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    31   5.2  
sp|P16846|UL23_HCMVA Tegument protein UL23 OS=Human cytomegalovi...    31   6.7  
sp|O24496|GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasm...    30   8.7  
sp|Q9UH65|SWP70_HUMAN Switch-associated protein 70 OS=Homo sapie...    30   8.8  
sp|P0C1G6|SWP70_BOVIN Switch-associated protein 70 OS=Bos taurus...    30   8.8  

>sp|P37707|B2_DAUCA B2 protein OS=Daucus carota PE=2 SV=1
          Length = 207

 Score = 35.4 bits (80), Expect = 0.27
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = +2

Query: 23  KFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLF 178
           +FPAQVR   +K C PL+E +F+  +  ++    +F+ ELN  +   L+ +F
Sbjct: 153 RFPAQVRVMTRKICEPLEEDSFRPIL--HHYDGPKFRLELNIPEAISLLDIF 202


>sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A
           OS=Mycobacterium avium GN=embA PE=3 SV=1
          Length = 1108

 Score = 34.7 bits (78), Expect = 0.47
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = -1

Query: 367 VLRRIVLVDSFSGRSRT*KT--RWRPPVAQRPRWRPPWQLAFWSEIFL-------CLLRR 215
           VL  IV +     RSR   T   WR P+A   R+RP   LA W  + L        +L  
Sbjct: 213 VLTAIVALAVLDRRSRGGGTLINWRSPIAWLSRYRPGTHLANWRRVGLATWIADAAVLAT 272

Query: 214 LWLWQTSGVQGPEELYQST 158
           L LW   G    ++ Y  T
Sbjct: 273 LLLWHVVGATSSDDGYNLT 291


>sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus
            GN=Cgnl1 PE=1 SV=2
          Length = 1298

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 539  RKRYLEDVYLAEQQALAXRPLLPEVYRDLEYQREA 643
            ++  L+D   AE++AL  R LL +  +DLEY+ EA
Sbjct: 1014 KEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEA 1048


>sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens
            GN=CGNL1 PE=1 SV=1
          Length = 1302

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 455  QRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDVYLAEQQALAXRPLLPEVYRDLEYQ 634
            QR L++   EA   R   +    E  +  +  L D   A+ +AL  R LL +  +DLEY+
Sbjct: 990  QRQLKEKTLEAEKSRLTAMKMQDEMRLMEEE-LRDYQRAQDEALTKRQLLEQTLKDLEYE 1048

Query: 635  REA 643
             EA
Sbjct: 1049 LEA 1051


>sp|A0LV02|CNPD_ACIC1 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
           GN=Acel_1490 PE=3 SV=1
          Length = 491

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +2

Query: 383 ASEIIPPSYALVPDVAHAEAELLRQRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDV 562
           A  +  PS    PD A AEAE+   R   + +E+ L  R   LD   E   AR+R L ++
Sbjct: 34  AGNVRQPSGMSGPDAAAAEAEIREARSELERREQRLAEREARLDAEHERLAARERQLAEL 93


>sp|P16846|UL23_HCMVA Tegument protein UL23 OS=Human cytomegalovirus
           (strain AD169) GN=UL23 PE=3 SV=2
          Length = 284

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -1

Query: 307 RWRPPVAQRPRWRPPWQLAF-WSEIFLCLLRRLW 209
           RWRPP   RP W+P  ++A  W +    ++RR W
Sbjct: 14  RWRPPKTSRP-WKPGQRVALVWPKDRCLVIRRRW 46


>sp|O24496|GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasmic
           OS=Arabidopsis thaliana GN=GLX2-2 PE=1 SV=2
          Length = 258

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 20/49 (40%), Positives = 25/49 (51%)
 Frame = -3

Query: 626 PNLCKLQVKEAX*PRLAVPPNKHPPSTVYEQLKLQPQDRVDKPSCQEPL 480
           PN  K+Q K A   +         PST+ E+L+  P  RVDKP  QE L
Sbjct: 189 PNNGKIQQKLAWARQQRQADLPTIPSTLEEELETNPFMRVDKPEIQEKL 237


>sp|Q9UH65|SWP70_HUMAN Switch-associated protein 70 OS=Homo sapiens
           GN=SWAP70 PE=1 SV=1
          Length = 585

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +2

Query: 428 AHAEAELLRQRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDVYLAEQQAL 586
           A    EL R++ +RQ  EE + +++  L+  ++    R R LED+YL  Q+AL
Sbjct: 385 ARFSTELEREKLIRQQMEEQVAQKSSELEQYLQ----RVRELEDMYLKLQEAL 433


>sp|P0C1G6|SWP70_BOVIN Switch-associated protein 70 OS=Bos taurus
           GN=SWAP70 PE=1 SV=1
          Length = 585

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +2

Query: 428 AHAEAELLRQRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDVYLAEQQAL 586
           A    EL R++ +RQ  EE + +++  L+  ++    R R LED+YL  Q+AL
Sbjct: 385 ARFSTELEREKLIRQQMEEQVAQKSSELEQYLQ----RVRELEDMYLKLQEAL 433
tr_hit_id B8LQS0
Definition tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 80
Score (bit) 89.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956442|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_M01, 5'
         (664 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea...    89   2e-16
tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea...    85   5e-15
tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea...    85   5e-15
tr|Q67WK6|Q67WK6_ORYSJ Os06g0227200 protein OS=Oryza sativa subs...    75   4e-12
tr|B8B489|B8B489_ORYSI Putative uncharacterized protein OS=Oryza...    75   4e-12
tr|A3B9V7|A3B9V7_ORYSJ Putative uncharacterized protein OS=Oryza...    75   4e-12
tr|B6UA70|B6UA70_MAIZE Putative uncharacterized protein OS=Zea m...    75   5e-12
tr|A7QX14|A7QX14_VITVI Chromosome chr14 scaffold_211, whole geno...    75   5e-12
tr|A7NYZ0|A7NYZ0_VITVI Chromosome chr6 scaffold_3, whole genome ...    72   3e-11
tr|A7QT80|A7QT80_VITVI Chromosome chr1 scaffold_166, whole genom...    70   2e-10
tr|Q6ZGT6|Q6ZGT6_ORYSJ Os02g0745600 protein OS=Oryza sativa subs...    69   3e-10
tr|A2X9K7|A2X9K7_ORYSI Putative uncharacterized protein OS=Oryza...    69   3e-10
tr|B6T8I6|B6T8I6_MAIZE Putative uncharacterized protein OS=Zea m...    68   6e-10
tr|Q84W28|Q84W28_ARATH Putative uncharacterized protein At2g3291...    65   3e-09
tr|A5CAT2|A5CAT2_VITVI Putative uncharacterized protein OS=Vitis...    64   1e-08
tr|A5BDJ5|A5BDJ5_VITVI Putative uncharacterized protein OS=Vitis...    61   7e-08
tr|A5ADC6|A5ADC6_VITVI Putative uncharacterized protein OS=Vitis...    60   2e-07
tr|O48774|O48774_ARATH Putative uncharacterized protein At2g3291...    59   2e-07
tr|Q8VZG6|Q8VZG6_ARATH AT5g61910/k22g18_30 (Putative uncharacter...    56   2e-06
tr|Q3E873|Q3E873_ARATH Uncharacterized protein At5g61910.3 OS=Ar...    56   2e-06
tr|O82177|O82177_ARATH Putative uncharacterized protein At2g3514...    54   9e-06
tr|Q9FH52|Q9FH52_ARATH Genomic DNA, chromosome 5, TAC clone:K22G...    51   6e-05
tr|Q2R3D9|Q2R3D9_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    51   7e-05
tr|Q0ISF8|Q0ISF8_ORYSJ Os11g0525700 protein OS=Oryza sativa subs...    51   7e-05
tr|B8BKT8|B8BKT8_ORYSI Putative uncharacterized protein OS=Oryza...    51   7e-05
tr|A2Q136|A2Q136_MEDTR Putative uncharacterized protein OS=Medic...    51   7e-05
tr|A7P2U4|A7P2U4_VITVI Chromosome chr1 scaffold_5, whole genome ...    47   8e-04
tr|Q7XB90|Q7XB90_ORYSJ KEAP1 OS=Oryza sativa subsp. japonica PE=...    47   0.001
tr|Q5VQH0|Q5VQH0_ORYSJ cDNA clone:J013070N02, full insert sequen...    47   0.001
tr|A2ZPM4|A2ZPM4_ORYSJ Putative uncharacterized protein OS=Oryza...    47   0.001

>tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 394

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 42/80 (52%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
 Frame = +2

Query: 2   AFKDSSRKFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFR 181
           AFK + + FPAQVRFRIQK+C+PL E  FK+AIKDNY    +FK ELN+EQV  L++LF+
Sbjct: 179 AFKSTKKPFPAQVRFRIQKECLPLSEEKFKVAIKDNYYGKKKFKFELNAEQVKNLVQLFK 238

Query: 182 PL---DSRGLPEPKPSKEAK 232
           P+   +SRG  + +P + ++
Sbjct: 239 PVPAQNSRGPRDSRPGRPSR 258


>tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 461

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
 Frame = +2

Query: 2   AFKDSSRKFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFR 181
           AF+ S R FPAQVRFRIQKDC+PL E  FK AIKDNY   N+F+ ELN++QV +L +LFR
Sbjct: 143 AFRGSKRPFPAQVRFRIQKDCLPLSEDIFKKAIKDNYDGKNKFRFELNAQQVKKLSELFR 202

Query: 182 PL---DSR 196
           P+   DSR
Sbjct: 203 PVPRFDSR 210


>tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 458

 Score = 84.7 bits (208), Expect = 5e-15
 Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
 Frame = +2

Query: 2   AFKDSSRKFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFR 181
           AF+ S R FPAQVRFRIQKDC+PL E  FK AIKDNY   N+F+ ELN++QV +L +LFR
Sbjct: 140 AFRGSKRPFPAQVRFRIQKDCLPLSEDIFKKAIKDNYDGKNKFRFELNAQQVKKLSELFR 199

Query: 182 PL---DSR 196
           P+   DSR
Sbjct: 200 PVPRFDSR 207


>tr|Q67WK6|Q67WK6_ORYSJ Os06g0227200 protein OS=Oryza sativa subsp.
           japonica GN=P0425F05.13 PE=2 SV=1
          Length = 704

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +2

Query: 17  SRKFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSR 196
           S KFPAQV+F+I KDC+PL E  FK AI++NY   ++F  ELNS QV RLI LF   +S 
Sbjct: 318 SGKFPAQVKFKIDKDCLPLPESRFKDAIRENYSAKSKFNPELNSRQVHRLIALF---ESV 374

Query: 197 GLPEPKPSK 223
            +P+P P K
Sbjct: 375 SVPQPAPQK 383


>tr|B8B489|B8B489_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22240 PE=4 SV=1
          Length = 704

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +2

Query: 17  SRKFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSR 196
           S KFPAQV+F+I KDC+PL E  FK AI++NY   ++F  ELNS QV RLI LF   +S 
Sbjct: 318 SGKFPAQVKFKIDKDCLPLPESRFKDAIRENYSAKSKFNPELNSRQVHRLIALF---ESV 374

Query: 197 GLPEPKPSK 223
            +P+P P K
Sbjct: 375 SVPQPAPQK 383


>tr|A3B9V7|A3B9V7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019829 PE=4 SV=1
          Length = 706

 Score = 75.1 bits (183), Expect = 4e-12
 Identities = 38/69 (55%), Positives = 48/69 (69%)
 Frame = +2

Query: 17  SRKFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSR 196
           S KFPAQV+F+I KDC+PL E  FK AI++NY   ++F  ELNS QV RLI LF   +S 
Sbjct: 318 SGKFPAQVKFKIDKDCLPLPESRFKDAIRENYSAKSKFNPELNSRQVHRLIALF---ESV 374

Query: 197 GLPEPKPSK 223
            +P+P P K
Sbjct: 375 SVPQPAPQK 383


>tr|B6UA70|B6UA70_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 507

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 35/65 (53%), Positives = 47/65 (72%)
 Frame = +2

Query: 23  KFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGL 202
           KFPAQV+F + KDC+P+ E +FK AIK+NY    RF  ELNS+QV RL+ +F+P+D   L
Sbjct: 249 KFPAQVKFSVDKDCLPIPESSFKHAIKENYSSKGRFTQELNSKQVQRLLAMFKPID---L 305

Query: 203 PEPKP 217
           P+  P
Sbjct: 306 PQSAP 310


>tr|A7QX14|A7QX14_VITVI Chromosome chr14 scaffold_211, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00008906001
           PE=4 SV=1
          Length = 602

 Score = 74.7 bits (182), Expect = 5e-12
 Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
 Frame = +2

Query: 26  FPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRP--LDSRG 199
           FP QVRF +  DC PL E  FK AIKDNY + N+FK EL  EQV +L+KLFRP  + S+ 
Sbjct: 204 FPVQVRFTVHMDCYPLPESIFKKAIKDNYDKTNKFKTELTMEQVKKLMKLFRPTEIHSKA 263

Query: 200 LPEPKPSKEAKKD 238
           LP   P +   ++
Sbjct: 264 LPIHSPPRARARE 276


>tr|A7NYZ0|A7NYZ0_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024305001
           PE=4 SV=1
          Length = 386

 Score = 72.0 bits (175), Expect = 3e-11
 Identities = 40/73 (54%), Positives = 50/73 (68%)
 Frame = +2

Query: 2   AFKDSSRKFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFR 181
           AFK S   FP+QVRF + +DC+PL E  FK  IKDNY + N+F CELNS+QV  L KLF+
Sbjct: 66  AFKSS---FPSQVRFSVLEDCLPLAEEKFKKVIKDNYYKKNKFNCELNSDQVKNLCKLFQ 122

Query: 182 PLDSRGLPEPKPS 220
              S+G P+ K S
Sbjct: 123 AA-SKG-PKSKDS 133


>tr|A7QT80|A7QT80_VITVI Chromosome chr1 scaffold_166, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006200001
           PE=4 SV=1
          Length = 351

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 33/56 (58%), Positives = 44/56 (78%)
 Frame = +2

Query: 23  KFPAQVRFRIQKDCMPLDEGAFKIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLD 190
           KFPAQV+F+I K+C+PL EGAFK AI+DNY   ++F+ EL  +QV  LI LFRP++
Sbjct: 158 KFPAQVKFKIWKECLPLSEGAFKNAIRDNY-EGSKFRPELTKKQVKALISLFRPIN 212