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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956443
Clone id TST39A01NGRL0025_M02
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_M02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTACTGGCCGTCGTTTTACAACGTCGAATTGGAAAAGCGCAGTGTCGAAGATCTGATCAC
CAATGTTGGCTCTGGTGGAGGTGGTGCTCCTGTTGCTGCTGCGGGTGCAGGCGTACCTGC
TGGAGGTGGAGCTGCTGCTCCCCCACCTGTTGAAGAGAAAAAGGAGGAACCCAAGGAAGA
AAGCGACGACGATATGGGTTTCAGTTTGTTTGATTAGTATGATTGCTTTTGTGCCTGATA
GCCCAATTTTGTAGGGATGATAGTATGGTGCTTGTCAAAATTTAAGATGCCGCTGAACCT
TGTAATTGCCTTGCTATTCAGTAAAAAACCATGATCACTTCAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P52855
Definition sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
Align length 62
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956443|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_M02, 5'
         (315 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays...    31   1.7  
sp|P08570|RLA1_DROME 60S acidic ribosomal protein P1 OS=Drosophi...    30   2.9  

>sp|P52855|RLA1_MAIZE 60S acidic ribosomal protein P1 OS=Zea mays
           GN=RPP1A PE=1 SV=1
          Length = 109

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 23/62 (37%), Positives = 25/62 (40%)
 Frame = +3

Query: 3   LEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSL 182
           LEKR+VEDLI +VGS                                    SDDDMGFSL
Sbjct: 50  LEKRNVEDLILSVGSGGGAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEE--SDDDMGFSL 107

Query: 183 FD 188
           FD
Sbjct: 108 FD 109


>sp|P08570|RLA1_DROME 60S acidic ribosomal protein P1 OS=Drosophila
           melanogaster GN=RpLP1 PE=1 SV=2
          Length = 112

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/62 (32%), Positives = 23/62 (37%)
 Frame = +3

Query: 3   LEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSL 182
           LE  +V+DLITN+GS                                    SDDDMGF L
Sbjct: 51  LEGINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGL 110

Query: 183 FD 188
           FD
Sbjct: 111 FD 112
tr_hit_id A7R8D5
Definition tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole genome shotgun sequence OS=Vitis vinifera
Align length 62
Score (bit) 39.3
E-value 0.099
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956443|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_M02, 5'
         (315 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, wh...    39   0.099
tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genom...    37   0.64 
tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genom...    33   5.5  

>tr|A7R8D5|A7R8D5_VITVI Chromosome undetermined scaffold_2463, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00011306001 PE=4 SV=1
          Length = 111

 Score = 39.3 bits (90), Expect = 0.099
 Identities = 24/62 (38%), Positives = 26/62 (41%)
 Frame = +3

Query: 3   LEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSL 182
           +EKRS+EDLITNVGS                                    SDDDMGFSL
Sbjct: 50  VEKRSIEDLITNVGSGGGGGAVAVAAPTSGGGGGAAAPPPVEEKKEEPKEESDDDMGFSL 109

Query: 183 FD 188
           FD
Sbjct: 110 FD 111


>tr|A7QEW1|A7QEW1_VITVI Chromosome chr16 scaffold_86, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037178001
           PE=4 SV=1
          Length = 111

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 23/62 (37%), Positives = 25/62 (40%)
 Frame = +3

Query: 3   LEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSL 182
           +EKR+VEDLI NVGS                                    SDDDMGFSL
Sbjct: 50  VEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESDDDMGFSL 109

Query: 183 FD 188
           FD
Sbjct: 110 FD 111


>tr|A5AKA4|A5AKA4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018396 PE=4 SV=1
          Length = 111

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 23/62 (37%), Positives = 25/62 (40%)
 Frame = +3

Query: 3   LEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSL 182
           +EKR+VEDLI NVGS                                    SDDDMGFSL
Sbjct: 50  VEKRNVEDLIANVGSGGGGAPVSAAAPAAGGASAAAAAPVVEEKKEEPKEESDDDMGFSL 109

Query: 183 FD 188
           FD
Sbjct: 110 FD 111


>tr|A7QJ38|A7QJ38_VITVI Chromosome chr2 scaffold_105, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00000494001
           PE=4 SV=1
          Length = 111

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/62 (33%), Positives = 25/62 (40%)
 Frame = +3

Query: 3   LEKRSVEDLITNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSL 182
           +EK+SV+DLI NVGS                                    SD+DMGFSL
Sbjct: 50  VEKKSVDDLIMNVGSGGGGAPMAVATMAGGGDAAGAAAPPPEEKKEEPKEESDEDMGFSL 109

Query: 183 FD 188
           FD
Sbjct: 110 FD 111