DK956457 |
Clone id |
TST39A01NGRL0025_M16 |
Library |
TST39 |
Length |
501 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_M16. 5' end sequence. |
Accession |
DK956457 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1267Contig1 |
Sequence |
TGATGAATGGCGGAGGAGGAGGAGGAGGGCGGAGCGGGAGGTGGTGGCGGCGGAGAGGAG TACGACGATGCGGAGGAGGATAGCGAGCCCGTGGAGACCATCATTAACCGCATTGAGCTC AAGTCTCGTCAGGTCGAGTGGCTACTGAAATCAGCACAGTACGCAGAAGCCCTCAAGACA GCCCTTGATGACTCCCCAACAAGGACAAGGGATGAGACTTGTAAGTCGGCCAATTGGGTA GTTGTTCATCGGGTGCTCATGGCATCAAAGGACACAGACTCTCTACTTGCATCCTTAGAG ACAGAGTTTTACGATATTCTAATGAAGTACTTATATAGGGGTTTGTCGACTGGGGACAGG CCAACTTGTGACCAATGTCTTAAATTGCACGAGAAACTCACAGAGAGAGCGGGCATGGGC TGCATAATGAGAGCGCTAGCCGATAAACGGAATACCGTATAAACATATAGAGCTAGAGTA GTGGACACAAGGGGGAAAAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O96626 |
Definition |
sp|O96626|ARPC5_DICDI Actin-related protein 2/3 complex subunit 5 OS=Dictyostelium discoideum |
Align length |
112 |
Score (bit) |
62.0 |
E-value |
2.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956457|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_M16, 5' (501 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O96626|ARPC5_DICDI Actin-related protein 2/3 complex subunit ... 62 2e-09 sp|Q4KLF8|ARPC5_RAT Actin-related protein 2/3 complex subunit 5 ... 57 5e-08 sp|Q5R516|ARPC5_PONAB Actin-related protein 2/3 complex subunit ... 57 5e-08 sp|O15511|ARPC5_HUMAN Actin-related protein 2/3 complex subunit ... 57 5e-08 sp|Q9CPW4|ARPC5_MOUSE Actin-related protein 2/3 complex subunit ... 56 8e-08 sp|Q3SYX9|ARPC5_BOVIN Actin-related protein 2/3 complex subunit ... 56 8e-08 sp|Q5R4M1|ARP5L_PONAB Actin-related protein 2/3 complex subunit ... 55 1e-07 sp|Q9BPX5|ARP5L_HUMAN Actin-related protein 2/3 complex subunit ... 55 1e-07 sp|Q5E963|ARP5L_BOVIN Actin-related protein 2/3 complex subunit ... 55 1e-07 sp|Q9D898|ARP5L_MOUSE Actin-related protein 2/3 complex subunit ... 55 2e-07 sp|A1L108|ARP5L_RAT Actin-related protein 2/3 complex subunit 5-... 55 2e-07 sp|P91167|ARPC5_CAEEL Probable actin-related protein 2/3 complex... 50 6e-06 sp|Q10316|ARPC5_SCHPO Actin-related protein 2/3 complex subunit ... 41 0.003 sp|P40518|ARPC5_YEAST Actin-related protein 2/3 complex subunit ... 36 0.12 sp|Q8CI12|SMTL2_MOUSE Smoothelin-like protein 2 OS=Mus musculus ... 32 1.3 sp|A6RIB9|TVP38_BOTFB Golgi apparatus membrane protein tvp38 OS=... 30 6.4 sp|Q0CJU8|HSE1_ASPTN Class E vacuolar protein-sorting machinery ... 30 6.4 sp|A3QG97|DXR_SHELP 1-deoxy-D-xylulose 5-phosphate reductoisomer... 30 8.3
>sp|O96626|ARPC5_DICDI Actin-related protein 2/3 complex subunit 5 OS=Dictyostelium discoideum GN=arcE PE=1 SV=1 Length = 138
Score = 62.0 bits (149), Expect = 2e-09 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 2/112 (1%) Frame = +1
Query: 121 KSRQVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVLMASKDTD--SLLAS 294 + ++V L + + +AL AL D P T+ K N +V +L + KD D + + + Sbjct: 27 REKEVTKALNAGKPQDALNVALADPPIYTKTGAIKDQNATIVLNLLGSFKDKDVETSVET 86
Query: 295 LETEFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 L + DILMKY+YRGL+TG+ K HE + ++ G G I+R +++K+ Sbjct: 87 LNDDQLDILMKYVYRGLATGENSPI--FFKWHECVLKKGGAGTIIRVISEKK 136
>sp|Q4KLF8|ARPC5_RAT Actin-related protein 2/3 complex subunit 5 OS=Rattus norvegicus GN=Arpc5 PE=1 SV=3 Length = 151
Score = 57.0 bits (136), Expect = 5e-08 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVLMASK--DTDSLLASLET 303 +V+ L+ AL+ AL + P T+ + K +V +VL++ K D + + SL+ Sbjct: 41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + + L+ HEK G+G I+R L ++ Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|Q5R516|ARPC5_PONAB Actin-related protein 2/3 complex subunit 5 OS=Pongo abelii GN=ARPC5 PE=2 SV=3 Length = 151
Score = 57.0 bits (136), Expect = 5e-08 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVLMASK--DTDSLLASLET 303 +V+ L+ AL+ AL + P T+ + K +V +VL++ K D + + SL+ Sbjct: 41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + + L+ HEK G+G I+R L ++ Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|O15511|ARPC5_HUMAN Actin-related protein 2/3 complex subunit 5 OS=Homo sapiens GN=ARPC5 PE=1 SV=3 Length = 151
Score = 57.0 bits (136), Expect = 5e-08 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVLMASK--DTDSLLASLET 303 +V+ L+ AL+ AL + P T+ + K +V +VL++ K D + + SL+ Sbjct: 41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + + L+ HEK G+G I+R L ++ Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAMLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|Q9CPW4|ARPC5_MOUSE Actin-related protein 2/3 complex subunit 5 OS=Mus musculus GN=Arpc5 PE=2 SV=3 Length = 151
Score = 56.2 bits (134), Expect = 8e-08 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVLMASK--DTDSLLASLET 303 +V+ L+ AL+ AL + P T+ + K +V +VL++ K D + + SL+ Sbjct: 41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + + L+ HEK G+G I+R L ++ Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|Q3SYX9|ARPC5_BOVIN Actin-related protein 2/3 complex subunit 5 OS=Bos taurus GN=ARPC5 PE=1 SV=3 Length = 151
Score = 56.2 bits (134), Expect = 8e-08 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVLMASK--DTDSLLASLET 303 +V+ L+ AL+ AL + P T+ + K +V +VL++ K D + + SL+ Sbjct: 41 EVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDK 100
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + + L+ HEK G+G I+R L ++ Sbjct: 101 NGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLTARK 149
>sp|Q5R4M1|ARP5L_PONAB Actin-related protein 2/3 complex subunit 5-like protein OS=Pongo abelii GN=ARPC5L PE=2 SV=1 Length = 153
Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVL--MASKDTDSLLASLET 303 +V+ LL+ A AL +SP T+++ K VV +VL S + + + SL+ Sbjct: 43 EVDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDR 102
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + L+ HEK G+G I+R L ++ Sbjct: 103 NGVDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|Q9BPX5|ARP5L_HUMAN Actin-related protein 2/3 complex subunit 5-like protein OS=Homo sapiens GN=ARPC5L PE=1 SV=1 Length = 153
Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVL--MASKDTDSLLASLET 303 +V+ LL+ A AL +SP T+++ K VV +VL S + + + SL+ Sbjct: 43 EVDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDR 102
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + L+ HEK G+G I+R L ++ Sbjct: 103 NGVDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|Q5E963|ARP5L_BOVIN Actin-related protein 2/3 complex subunit 5-like protein OS=Bos taurus GN=ARPC5L PE=2 SV=1 Length = 153
Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVL--MASKDTDSLLASLET 303 +V+ LL+ A AL +SP T+++ K VV +VL S + + + SL+ Sbjct: 43 EVDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDR 102
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + L+ HEK G+G I+R L ++ Sbjct: 103 NGIDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
>sp|Q9D898|ARP5L_MOUSE Actin-related protein 2/3 complex subunit 5-like protein OS=Mus musculus GN=Arpc5l PE=1 SV=1 Length = 153
Score = 55.1 bits (131), Expect = 2e-07 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 2/109 (1%) Frame = +1
Query: 130 QVEWLLKSAQYAEALKTALDDSPTRTRDETCKSANWVVVHRVL--MASKDTDSLLASLET 303 +V+ LL+ A AL +SP T+++ K VV +VL S + + + SL+ Sbjct: 43 EVDGLLRQGDMLRAFHAALRNSPINTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDR 102
Query: 304 EFYDILMKYLYRGLSTGDRPTCDQCLKLHEKLTERAGMGCIMRALADKR 450 D+LMKY+Y+G + L+ HEK G+G I+R L ++ Sbjct: 103 NGIDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRVLTARK 151
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9M117 |
Definition |
tr|Q9M117|Q9M117_ARATH Actin-related protein 2/3 complex subunit 5 OS=Arabidopsis thaliana |
Align length |
126 |
Score (bit) |
185.0 |
E-value |
9.0e-46 |
Report |
|