DK956469 |
Clone id |
TST39A01NGRL0025_N04 |
Library |
TST39 |
Length |
596 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_N04. 5' end sequence. |
Accession |
DK956469 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1604Contig1 |
Sequence |
TGCTTGCGAAGAGCGCAATCTCCTTCCTGCGCATCATCTCCCGGCAGGTGATCGTCTACT TCGTCTGCGAAAATGGGGCGTGTCAGAACCAAGACCGTGAAGAAAGCCTCCAGAGTTATG ATCGAGAGATATTACTCTCGTATGACCCTGGATTTCCAGACCAACAAGAAGATCGCCGAG GAAGTGGCCATCATTCCTTCCAAGCGCCTTCGCAACAAGATTGCGGGATTTGCAACTCAT TTGATGAAGCGTATCCAGAGAGGACCTGTGCGAGGGATATCTTTAAAGTTGCAAGAAGAG GAGCGGGAGAGGCGTATGGATTTTGTACCCGAGGAAAGCGCTATCAAGACAGATATCATT GAGGTCGATAAGGAGACAATGGATCTGTTGCAGCACCTCAACATGGGGCAGCTTCCAGGA GTTGTTAAGCAGGAGGCTCCTGCTGGTGGTGGCAACTTTGGAAAGCCGCAACCTGTAGGT GGATTCCAAGGTCCCCGACGGAACTGAGTTCTCCCTTTAGGGTAGTGGCTTACATTGAAT GTGCAGAAGCCTGACTATCAATTGGCCAAATTTTGGCAGTTTTTTTGTAAAACAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49215 |
Definition |
sp|P49215|RS17_SOLLC 40S ribosomal protein S17 OS=Solanum lycopersicum |
Align length |
142 |
Score (bit) |
209.0 |
E-value |
6.0e-54 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S0I3 |
Definition |
tr|A9S0I3|A9S0I3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
142 |
Score (bit) |
244.0 |
E-value |
3.0e-63 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956469|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_N04, 5' (596 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S0I3|A9S0I3_PHYPA Predicted protein OS=Physcomitrella paten... 244 3e-63 tr|A9RCZ0|A9RCZ0_PHYPA Predicted protein OS=Physcomitrella paten... 243 5e-63 tr|A9S0I2|A9S0I2_PHYPA Predicted protein OS=Physcomitrella paten... 243 8e-63 tr|A9RCZ1|A9RCZ1_PHYPA Predicted protein (Fragment) OS=Physcomit... 241 2e-62 tr|A9NK75|A9NK75_PICSI Putative uncharacterized protein OS=Picea... 227 3e-58 tr|A9SGG5|A9SGG5_PHYPA Predicted protein (Fragment) OS=Physcomit... 221 2e-56 tr|A9NP61|A9NP61_PICSI Putative uncharacterized protein OS=Picea... 218 2e-55 tr|Q6RJY3|Q6RJY3_CAPAN 40S ribosomal protein S17 OS=Capsicum ann... 207 3e-52 tr|Q3HRX4|Q3HRX4_SOLTU 40S ribosomal protein S17-like protein OS... 207 3e-52 tr|A5BHY1|A5BHY1_VITVI Putative uncharacterized protein (Chromos... 204 4e-51 tr|B6TD69|B6TD69_MAIZE 40S ribosomal protein S17-4 OS=Zea mays P... 198 2e-49 tr|B4FID1|B4FID1_MAIZE Putative uncharacterized protein OS=Zea m... 196 6e-49 tr|A7PP71|A7PP71_VITVI Chromosome chr8 scaffold_23, whole genome... 196 6e-49 tr|A5B935|A5B935_VITVI Putative uncharacterized protein OS=Vitis... 196 6e-49 tr|Q01A77|Q01A77_OSTTA Putative 40S ribosomal protein S17 (ISS) ... 196 8e-49 tr|B7FGG4|B7FGG4_MEDTR Putative uncharacterized protein OS=Medic... 195 2e-48 tr|A9PEJ6|A9PEJ6_POPTR Putative uncharacterized protein OS=Popul... 194 2e-48 tr|A4RWR0|A4RWR0_OSTLU Ribosomal protein S17, component of cytos... 194 2e-48 tr|A9PA78|A9PA78_POPTR Putative uncharacterized protein OS=Popul... 194 3e-48 tr|B7FGP4|B7FGP4_MEDTR Putative uncharacterized protein OS=Medic... 194 4e-48 tr|B7FGM8|B7FGM8_MEDTR Putative uncharacterized protein OS=Medic... 193 5e-48 tr|A9PA24|A9PA24_POPTR Putative uncharacterized protein OS=Popul... 193 5e-48 tr|B7FH86|B7FH86_MEDTR Putative uncharacterized protein OS=Medic... 192 9e-48 tr|B6UH57|B6UH57_MAIZE 40S ribosomal protein S17-4 OS=Zea mays P... 192 2e-47 tr|Q8H7V0|Q8H7V0_ORYSJ Os03g0109500 protein OS=Oryza sativa subs... 191 3e-47 tr|Q7XEQ3|Q7XEQ3_ORYSJ Os10g0411800 protein OS=Oryza sativa subs... 191 3e-47 tr|A9PA81|A9PA81_POPTR Putative uncharacterized protein OS=Popul... 191 3e-47 tr|A8JGK1|A8JGK1_CHLRE Ribosomal protein S17 OS=Chlamydomonas re... 191 3e-47 tr|A2Z764|A2Z764_ORYSI Putative uncharacterized protein OS=Oryza... 191 3e-47 tr|B8ALF3|B8ALF3_ORYSI Putative uncharacterized protein OS=Oryza... 189 1e-46
>tr|A9S0I3|A9S0I3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_207482 PE=4 SV=1 Length = 144
Score = 244 bits (623), Expect = 3e-63 Identities = 126/142 (88%), Positives = 132/142 (92%) Frame = +1
Query: 73 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 252 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR Sbjct: 1 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 60
Query: 253 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ 432 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQ 120
Query: 433 EAPAGGGNFGKPQPVGGFQGPR 498 AP GG F KPQ GG+QG R Sbjct: 121 AAPTAGGGFFKPQG-GGYQGNR 141
>tr|A9RCZ0|A9RCZ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_158551 PE=4 SV=1 Length = 144
Score = 243 bits (621), Expect = 5e-63 Identities = 126/142 (88%), Positives = 132/142 (92%) Frame = +1
Query: 73 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 252 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR Sbjct: 1 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 60
Query: 253 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ 432 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQ 120
Query: 433 EAPAGGGNFGKPQPVGGFQGPR 498 AP GG F KPQ GG+QG R Sbjct: 121 AAPTTGGGFFKPQG-GGYQGNR 141
>tr|A9S0I2|A9S0I2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_72969 PE=4 SV=1 Length = 146
Score = 243 bits (619), Expect = 8e-63 Identities = 125/143 (87%), Positives = 132/143 (92%) Frame = +1
Query: 70 KMGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMK 249 + GRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMK Sbjct: 2 EQGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMK 61
Query: 250 RIQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVK 429 RIQRGPVRGISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+ Sbjct: 62 RIQRGPVRGISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQ 121
Query: 430 QEAPAGGGNFGKPQPVGGFQGPR 498 Q AP GG F KPQ GG+QG R Sbjct: 122 QAAPTAGGGFFKPQG-GGYQGNR 143
>tr|A9RCZ1|A9RCZ1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_111833 PE=4 SV=1 Length = 144
Score = 241 bits (616), Expect = 2e-62 Identities = 125/141 (88%), Positives = 131/141 (92%) Frame = +1
Query: 76 GRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKRI 255 GRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKRI Sbjct: 2 GRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKRI 61
Query: 256 QRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQE 435 QRGPVRGISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q Sbjct: 62 QRGPVRGISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQA 121
Query: 436 APAGGGNFGKPQPVGGFQGPR 498 AP GG F KPQ GG+QG R Sbjct: 122 APTTGGGFFKPQG-GGYQGNR 141
>tr|A9NK75|A9NK75_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 146
Score = 227 bits (579), Expect = 3e-58 Identities = 119/141 (84%), Positives = 126/141 (89%), Gaps = 1/141 (0%) Frame = +1
Query: 73 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 252 MGRVRTKTVKK+SR +IERYYSRMTLDF TNKKI EEVAIIPSKRLRNKIAGF+THLMKR Sbjct: 1 MGRVRTKTVKKSSRQIIERYYSRMTLDFHTNKKIVEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 253 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ 432 IQRGPVRGISLKLQEEERERRMDFVPEESAIKT++IEVDKETMD+L L M LPGVVKQ Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTEVIEVDKETMDMLASLGMSDLPGVVKQ 120
Query: 433 -EAPAGGGNFGKPQPVGGFQG 492 + PAGGG F KP GGFQG Sbjct: 121 ADPPAGGGGFIKP---GGFQG 138
>tr|A9SGG5|A9SGG5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_38208 PE=4 SV=1 Length = 122
Score = 221 bits (564), Expect = 2e-56 Identities = 113/121 (93%), Positives = 118/121 (97%) Frame = +1
Query: 76 GRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKRI 255 GRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKRI Sbjct: 2 GRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKRI 61
Query: 256 QRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQE 435 QRGPVRGISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q Sbjct: 62 QRGPVRGISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQA 121
Query: 436 A 438 A Sbjct: 122 A 122
>tr|A9NP61|A9NP61_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 145
Score = 218 bits (556), Expect = 2e-55 Identities = 112/140 (80%), Positives = 121/140 (86%) Frame = +1
Query: 73 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 252 MGRVRTKTVKK+SR ++ERYYSRMTLDF TNKKI EEVAIIPSKRLRNKIAGF+THLMKR Sbjct: 1 MGRVRTKTVKKSSRQVLERYYSRMTLDFHTNKKIVEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 253 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ 432 IQRGPVRGISLKLQEEERERRMDFVP+ESAIK D+IEVDKETMD+L L M LPGVVKQ Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPDESAIKIDVIEVDKETMDMLASLGMADLPGVVKQ 120
Query: 433 EAPAGGGNFGKPQPVGGFQG 492 P GG F +P GG+ G Sbjct: 121 ADPPAGGGFMRPG--GGYLG 138
>tr|Q6RJY3|Q6RJY3_CAPAN 40S ribosomal protein S17 OS=Capsicum annuum PE=2 SV=1 Length = 145
Score = 207 bits (528), Expect = 3e-52 Identities = 108/143 (75%), Positives = 119/143 (83%), Gaps = 12/143 (8%) Frame = +1
Query: 73 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 252 MGRVRTKTVKK+SR +IERYYS+MTLDF TNKKI EEVAIIPSKRLRNKIAGF+THLMKR Sbjct: 1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 253 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ 432 IQ+GPVRGISLKLQEEERERRMDFVP+ESAIKTD+IEVDKET+D+L L M +LPGVVKQ Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMAELPGVVKQ 120
Query: 433 EAP------------AGGGNFGK 465 A G G FG+ Sbjct: 121 AAEPQAVAATLPTFGRGAGGFGR 143
>tr|Q3HRX4|Q3HRX4_SOLTU 40S ribosomal protein S17-like protein OS=Solanum tuberosum PE=2 SV=1 Length = 144
Score = 207 bits (528), Expect = 3e-52 Identities = 108/142 (76%), Positives = 118/142 (83%), Gaps = 11/142 (7%) Frame = +1
Query: 73 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 252 MGRVRTKTVKK+SR +IERYYS+MTLDF TNKKI EEVAIIPSKRLRNKIAGF+THLMKR Sbjct: 1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 253 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ 432 IQ+GPVRGISLKLQEEERERRMDFVP+ESAIKTD+IEVDKET+D+L L M LPGVVKQ Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSSLGMSDLPGVVKQ 120
Query: 433 EAP-----------AGGGNFGK 465 A G G FG+ Sbjct: 121 AAEPQAVAALPTFGRGAGGFGR 142
>tr|A5BHY1|A5BHY1_VITVI Putative uncharacterized protein (Chromosome undetermined scaffold_100, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00013816001 PE=4 SV=1 Length = 144
Score = 204 bits (518), Expect = 4e-51 Identities = 102/121 (84%), Positives = 113/121 (93%) Frame = +1
Query: 73 MGRVRTKTVKKASRVMIERYYSRMTLDFQTNKKIAEEVAIIPSKRLRNKIAGFATHLMKR 252 MGRVRTKTVKK+SR +IERYYSRMTLDF TNKKI EEVAIIPSKRLRNKIAGF+THLMKR Sbjct: 1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
Query: 253 IQRGPVRGISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ 432 IQ+GPVRGISLKLQEEERERRMDFVP+ESAIKTD+I+VDKET+D+L L M +LPGVV+ Sbjct: 61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDVIKVDKETIDMLSALGMAELPGVVET 120
Query: 433 E 435 E Sbjct: 121 E 121
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