DK956481
Clone id TST39A01NGRL0025_N17
Library
Length 300
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_N17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CAAGAAGGGTATGTTTGTCGCTGGGTATACATACTAAGAAGATAGTTTGTACCCATTTTG
GTTCTGTGATCTGTCCAATCGTGTGAATCACCACCACTCACTATATGCTCTCTGCAGTTG
TATATGCTGCCTAGTCAGTAAATTGTGAAAGGGATATGAGGTACCAAGTTTTTAATGTTA
TGGTAAACCTCCATTTGTTGTATGCTGAGCAACTTGATTTGCCCATGTATCTTACATTAT
GGCAATCAGTTTGTGTTGGCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8N4F7
Definition sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens
Align length 36
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956481|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_N17, 5'
(263 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens GN... 31 2.2
sp|Q66G57|BTUB_YERPS Vitamin B12 transporter btuB OS=Yersinia ps... 30 5.0
sp|A7FD14|BTUB_YERP3 Vitamin B12 transporter btuB OS=Yersinia ps... 30 5.0
sp|P49035|SUS1_DAUCA Sucrose synthase isoform 1 OS=Daucus carota... 29 8.5

>sp|Q8N4F7|RN175_HUMAN RING finger protein 175 OS=Homo sapiens
GN=RNF175 PE=2 SV=1
Length = 328

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3

Query: 153 DMRYQVFNVMVNLHLLYAEQLDLPMYLTLWQSVCVG 260
D++ + N H LY + LD YL WQ V +G
Sbjct: 281 DLKRMISNPWERTHFLYGQILDWLRYLVAWQPVVIG 316


>sp|Q66G57|BTUB_YERPS Vitamin B12 transporter btuB OS=Yersinia
pseudotuberculosis GN=btuB PE=3 SV=1
Length = 624

Score = 29.6 bits (65), Expect = 5.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1

Query: 92 GDSHDWTDHRTKMGTNYLLSMYTQRQT 12
G DW T+ GTNYL + Y QR T
Sbjct: 337 GGGLDWQKQTTEPGTNYLSNGYEQRNT 363


>sp|A7FD14|BTUB_YERP3 Vitamin B12 transporter btuB OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=btuB PE=3 SV=1
Length = 624

Score = 29.6 bits (65), Expect = 5.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1

Query: 92 GDSHDWTDHRTKMGTNYLLSMYTQRQT 12
G DW T+ GTNYL + Y QR T
Sbjct: 337 GGGLDWQKQTTEPGTNYLSNGYEQRNT 363


>sp|P49035|SUS1_DAUCA Sucrose synthase isoform 1 OS=Daucus carota
PE=2 SV=1
Length = 808

Score = 28.9 bits (63), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3

Query: 177 VMVNLHLLYAEQLDLPMYLTLWQSVCVGS 263
V VN+H L E+L +P YL + + +GS
Sbjct: 100 VRVNVHHLVVEELSVPQYLQFKEELVIGS 128


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956481|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_N17, 5'
(263 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******