NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956502
Clone id TST39A01NGRL0025_O14
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_O14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCAGGCCCAGCTCTTCTTCTTCTTGCACCCCTCATCGCTTGTCAAGAGGGCCTCGCTTTA
CTGCTGGATATAAGGCCATCCATCGCCATGCTTCACGTAGCCCACACCTTCACTCAAGAC
AAGCCAGGTGGTACCTCAACGAAGAAACGAAGTCAGTGGCCAGAGCTCGCATTGCAGTGG
ATATCGGCTGACGGTGGCCAGCAGCTCTCCATGTGGGATAGGCTGCCATTCTGCCCTCCT
TATAGCTGGCCGGCGGCCATCTTCTCAATGACGAAGGCAAGTCGATCACCGTCCTCGTCT
CCCACCATTCTGCACCCTCATGAGGATGAAAGCTGTGAAACAAAGCAAAATTGTGAGGAA
GGTCATGTGATGGTGATCAAAGAAGACAAGGACAATGCCATGAGCTCAGGTAAGGCACCG
ATCAGGTCCTTTAATTCGGCTTTTGCATCTGTCGGAAGGGACGGTGGTGCTCCAAATGGC
GACAATGCAACCGAAGAGACTGTTTTAATCGGAGCCAACGATGTGGTGATGGATGTGAGG
ATTTGGAGCTCTCTTCCAGAAGACATCATAGAGAAGGTGCTAGCATGGCTTCCACTCACT
AGCGTGCTGCGATTCCGGGCA
■■Homology search results ■■ -
sp_hit_id Q9LFV5
Definition sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Arabidopsis thaliana
Align length 47
Score (bit) 36.2
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956502|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_O14, 5'
         (621 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Ar...    36   0.14 
sp|Q5P801|ACEK_AZOSE Isocitrate dehydrogenase kinase/phosphatase...    36   0.18 
sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thalian...    35   0.24 
sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis...    35   0.41 
sp|Q99PI4|LPIN3_MOUSE Lipin-3 OS=Mus musculus GN=Lpin3 PE=1 SV=1       33   0.91 
sp|P0A508|BCCA_MYCTU Acetyl-/propionyl-coenzyme A carboxylase al...    32   2.0  
sp|P0A509|BCCA_MYCBO Acetyl-/propionyl-coenzyme A carboxylase al...    32   2.0  
sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA OS=Dic...    32   2.6  
sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190 OS=Ar...    32   2.6  
sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia...    32   2.6  
sp|P55197|AF10_HUMAN Protein AF-10 OS=Homo sapiens GN=MLLT10 PE=...    32   2.6  
sp|Q9WS39|PHOSP_TPMV Phosphoprotein OS=Tupaia paramyxovirus GN=P...    32   3.4  
sp|Q3JF23|GPMI_NITOC 2,3-bisphosphoglycerate-independent phospho...    32   3.4  
sp|Q9AVB0|LECB_PHYAM Lectin-B OS=Phytolacca americana PE=1 SV=1        32   3.5  
sp|B0KWR6|SFI1_CALJA Protein SFI1 homolog OS=Callithrix jacchus ...    31   4.5  
sp|A6QYC6|DUS3_AJECN tRNA-dihydrouridine synthase 3 OS=Ajellomyc...    31   4.5  
sp|Q82IE8|ISPH_STRAW 4-hydroxy-3-methylbut-2-enyl diphosphate re...    31   5.9  
sp|Q91994|OTX1_DANRE Homeobox protein OTX1 OS=Danio rerio GN=otx...    31   5.9  
sp|P35951|LDLR_MOUSE Low-density lipoprotein receptor OS=Mus mus...    31   5.9  
sp|P38041|BOB1_YEAST Protein BOB1 OS=Saccharomyces cerevisiae GN...    31   5.9  
sp|Q9LPW2|FBK2_ARATH Putative F-box/Kelch-repeat protein At1g128...    30   7.7  
sp|Q29116|TENA_PIG Tenascin OS=Sus scrofa GN=TNC PE=1 SV=1             30   7.7  
sp|P09794|AMY_STRLM Alpha-amylase OS=Streptomyces limosus GN=aml...    30   7.7  
sp|P30270|AMY_STRGR Alpha-amylase OS=Streptomyces griseus GN=amy...    30   7.7  

>sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710
           OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1
          Length = 448

 Score = 36.2 bits (82), Expect = 0.14
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +1

Query: 493 EETVLIGANDVVMDVR----IWSSLPEDIIEKVLAWLPLTSVLRFRA 621
           EETV      VV DV+    IW+ LPED++ ++LA +P   + R R+
Sbjct: 83  EETVASFGKQVVADVQMEDGIWAMLPEDLLNEILARVPPFMIFRIRS 129


>sp|Q5P801|ACEK_AZOSE Isocitrate dehydrogenase kinase/phosphatase
           OS=Azoarcus sp. (strain EbN1) GN=aceK PE=3 SV=1
          Length = 591

 Score = 35.8 bits (81), Expect = 0.18
 Identities = 25/77 (32%), Positives = 38/77 (49%)
 Frame = -3

Query: 271 SLRRWPPASYKEGRMAAYPTWRAAGHRQPISTAMRALATDFVSSLRYHLACLE*RCGLRE 92
           + RR PPA Y E  MAA P W +AG   P+       AT  + + R   A L+    L +
Sbjct: 493 NFRRIPPAPYPEMEMAAEP-WYSAG---PMDVFPEEFATFLLGAPRVRKAFLKHHRDLLD 548

Query: 91  AWRWMALYPAVKRGPLD 41
           A  W  +  ++++G L+
Sbjct: 549 AKFWQDVQASIRKGYLE 565


>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana
           GN=FBX6 PE=2 SV=1
          Length = 467

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 8/125 (6%)
 Frame = +1

Query: 271 TKASRSPSSSPTILHPHEDESCETKQNCEEGHVMVIKEDK------DNAMSSGKAP--IR 426
           + +S   SSSP+ L  H  +        + G  +   ED       D  M+ GK P   +
Sbjct: 28  SSSSSLSSSSPSFLVLHHPQY-------QNGWCLPCIEDTSADDCCDIVMAGGKRPGIFK 80

Query: 427 SFNSAFASVGRDGGAPNGDNATEETVLIGANDVVMDVRIWSSLPEDIIEKVLAWLPLTSV 606
              +    V R         +  E   I  N   MD  IW   P+D+ E V++ LP+ + 
Sbjct: 81  MLETVKPPVKRTRKERTQGKSCTEVDEISGN---MDQEIWQEFPQDLFEDVVSRLPMATF 137

Query: 607 LRFRA 621
            +FRA
Sbjct: 138 FQFRA 142


>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis
           thaliana GN=UFO PE=1 SV=2
          Length = 442

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 475 NGDNATEETVLIGANDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFR 618
           +  + T  T    ++   MD RIWS LP  ++++V+A+LP  +  R R
Sbjct: 24  SNSSTTTSTTTDSSSGQWMDGRIWSKLPPPLLDRVIAFLPPPAFFRTR 71


>sp|Q99PI4|LPIN3_MOUSE Lipin-3 OS=Mus musculus GN=Lpin3 PE=1 SV=1
          Length = 848

 Score = 33.5 bits (75), Expect = 0.91
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 280 SRSPSSSPTILHPHEDESCETKQNCEEGHVMVIKEDKDNAMSS-GKAPIRS 429
           +  PSS P  +HP+ D  C  + N   G +M  K D +  + S   +P+R+
Sbjct: 184 AEEPSSQPKDIHPYSDGECTPQANLSSGDLMSPKSDSELELRSLEPSPLRA 234


>sp|P0A508|BCCA_MYCTU Acetyl-/propionyl-coenzyme A carboxylase alpha
           chain OS=Mycobacterium tuberculosis GN=accA1 PE=3 SV=1
          Length = 654

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 265 RRWPPASYKEGRMAAYPT-WRAAGHRQPISTAMR 167
           R+W  A   +G + A P+ WR  GH  P+ TAMR
Sbjct: 467 RQWALARRAQGDLWAAPSGWRGGGHMAPVRTAMR 500


>sp|P0A509|BCCA_MYCBO Acetyl-/propionyl-coenzyme A carboxylase alpha
           chain OS=Mycobacterium bovis GN=accA1 PE=3 SV=1
          Length = 654

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 265 RRWPPASYKEGRMAAYPT-WRAAGHRQPISTAMR 167
           R+W  A   +G + A P+ WR  GH  P+ TAMR
Sbjct: 467 RQWALARRAQGDLWAAPSGWRGGGHMAPVRTAMR 500


>sp|Q55D99|PAKA_DICDI Serine/threonine-protein kinase pakA
           OS=Dictyostelium discoideum GN=pakA PE=1 SV=1
          Length = 1197

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = +1

Query: 265 SMTKASRSPSSSPTILHPHEDESCETKQNCEEGHVMVIKEDKDNAMSSGKAPIRSFNSAF 444
           S   AS S SS   ++ P +DE   +  +  +G +   +EDK    SS  +   S N   
Sbjct: 695 SPISASTSMSSPTLVVSPRKDELTTSTGSTRKGSISE-REDKKKVSSSSTSSSSSSNGGL 753

Query: 445 ASVGRDGGAPNGDNATEE 498
           +S G+D      D+++EE
Sbjct: 754 SSSGKD---HKKDHSSEE 768


>sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190
           OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1
          Length = 403

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 529 MDVRIWSSLPEDIIEKVLAWLPLTSVLRFRA 621
           +D  IWS+LP  ++E +L+ LP  ++L  R+
Sbjct: 43  LDPNIWSNLPNHLLEHILSLLPFKTLLTLRS 73


>sp|Q6CB23|CWC24_YARLI Pre-mRNA-splicing factor CWC24 OS=Yarrowia
           lipolytica GN=CWC24 PE=3 SV=1
          Length = 256

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 250 PAAIFSMTKASRSPSSSPTILHPHEDESCETKQNCEEGHVMVIKEDKDNAMSSGKAPIR 426
           P ++ + TK  R+PS S TI H H     +T +  +E  ++  K+D D++    K P +
Sbjct: 48  PTSVATSTKV-RAPSFSSTIDHSHSRNLSKTDEATKE-TILYAKDDSDDSQKLSKGPYK 104
tr_hit_id A9TDG5
Definition tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 51.6
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956502|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_O14, 5'
         (621 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella paten...    52   4e-05
tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella paten...    49   3e-04
tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella paten...    47   7e-04
tr|A9TZQ0|A9TZQ0_PHYPA Predicted protein OS=Physcomitrella paten...    47   0.001
tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.010
tr|A9RNC3|A9RNC3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.023
tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.039
tr|A9TXI0|A9TXI0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.086
tr|A9TXA2|A9TXA2_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.086
tr|A9TTQ6|A9TTQ6_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.086
tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment) OS=Physcomit...    40   0.15 
tr|Q2WBM6|Q2WBM6_9LAMI Fimbriata protein OS=Misopates orontium G...    39   0.19 
tr|B8LS03|B8LS03_PICSI Putative uncharacterized protein OS=Picea...    39   0.19 
tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea...    39   0.19 
tr|A9SEW3|A9SEW3_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.25 
tr|B8B183|B8B183_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.43 
tr|Q2U7U1|Q2U7U1_ASPOR Predicted protein OS=Aspergillus oryzae G...    38   0.43 
tr|Q655Y0|Q655Y0_ORYSJ Putative stamina pistilloidia (Panicle or...    38   0.56 
tr|Q41223|Q41223_ANTMA Fim protein OS=Antirrhinum majus GN=fim P...    38   0.56 
tr|B8Y9B5|B8Y9B5_PONTR F-box family protein OS=Poncirus trifolia...    38   0.56 
tr|B6U651|B6U651_MAIZE F-box domain containing protein OS=Zea ma...    38   0.56 
tr|A9SY62|A9SY62_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.56 
tr|A9SVS4|A9SVS4_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.56 
tr|A9SV61|A9SV61_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.56 
tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.56 
tr|B6E0Z1|B6E0Z1_CAPAN ANANTHA OS=Capsicum annuum GN=AN PE=2 SV=1      37   0.73 
tr|A9NV51|A9NV51_PICSI Putative uncharacterized protein OS=Picea...    37   0.73 
tr|Q9DAJ8|Q9DAJ8_MOUSE Putative uncharacterized protein OS=Mus m...    37   0.95 
tr|A7QP47|A7QP47_VITVI Chromosome chr1 scaffold_136, whole genom...    37   0.95 
tr|A5BZT8|A5BZT8_VITVI Putative uncharacterized protein OS=Vitis...    37   0.95 

>tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_91322 PE=4 SV=1
          Length = 393

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 20/34 (58%), Positives = 29/34 (85%)
 Frame = +1

Query: 520 DVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFRA 621
           +VVMD ++WS  PED++++VLAWLPL+S+ R RA
Sbjct: 31  EVVMDPQLWSFFPEDLVDRVLAWLPLSSIFRLRA 64


>tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_98858 PE=4 SV=1
          Length = 395

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +1

Query: 493 EETVLIGANDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFR 618
           ++T+L   N+  +D  +WS LP  +IEK+LAWLP+ S LRFR
Sbjct: 32  QDTLLPVHNECDLDSDLWSDLPRHLIEKILAWLPIPSYLRFR 73


>tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234671 PE=4 SV=1
          Length = 462

 Score = 47.4 bits (111), Expect = 7e-04
 Identities = 19/32 (59%), Positives = 25/32 (78%)
 Frame = +1

Query: 523 VVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFR 618
           V MD  +W SLPED++E+VLAWLP+ S+ R R
Sbjct: 65  VAMDESVWKSLPEDLMERVLAWLPIHSLFRMR 96


>tr|A9TZQ0|A9TZQ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172882 PE=4 SV=1
          Length = 593

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = +1

Query: 517 NDVVMDVRIWSSLPEDIIEKVLAWLPLTSVLRFR 618
           +D  MD  IW SLPED+ +K+L WLP+ S  RFR
Sbjct: 224 SDPEMDENIWQSLPEDVADKILLWLPVASCARFR 257


>tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164284 PE=4 SV=1
          Length = 648

 Score = 43.5 bits (101), Expect = 0.010
 Identities = 16/31 (51%), Positives = 27/31 (87%)
 Frame = +1

Query: 526 VMDVRIWSSLPEDIIEKVLAWLPLTSVLRFR 618
           V+D +IW+ LPE+++E+VL ++PL S++RFR
Sbjct: 293 VLDAKIWNKLPEELLERVLLYVPLKSLVRFR 323


>tr|A9RNC3|A9RNC3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160103 PE=4 SV=1
          Length = 407

 Score = 42.4 bits (98), Expect = 0.023
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +1

Query: 529 MDVRIWSSLPEDIIEKVLAWLPLTSVLRFRA 621
           MD +IWS LPED+  +VLAWLP+ S+ + R+
Sbjct: 33  MDPKIWSLLPEDLTNRVLAWLPIPSLFQARS 63


>tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90500 PE=4 SV=1
          Length = 371

 Score = 41.6 bits (96), Expect = 0.039
 Identities = 15/31 (48%), Positives = 26/31 (83%)
 Frame = +1

Query: 526 VMDVRIWSSLPEDIIEKVLAWLPLTSVLRFR 618
           V+D +IW+ LPE+++E+VL ++PL ++ RFR
Sbjct: 16  VLDAKIWNKLPEELLERVLLYVPLQTLARFR 46


>tr|A9TXI0|A9TXI0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172546 PE=4 SV=1
          Length = 861

 Score = 40.4 bits (93), Expect = 0.086
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 538 RIWSSLPEDIIEKVLAWLPLTSVLRFRA 621
           RIWS LPED+I++ LA LP+ S  RFR+
Sbjct: 383 RIWSGLPEDLIDRTLACLPVPSFFRFRS 410


>tr|A9TXA2|A9TXA2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172502 PE=4 SV=1
          Length = 422

 Score = 40.4 bits (93), Expect = 0.086
 Identities = 15/30 (50%), Positives = 24/30 (80%)
 Frame = +1

Query: 529 MDVRIWSSLPEDIIEKVLAWLPLTSVLRFR 618
           MD +IW +LP  ++E +LAWLP++S+L+ R
Sbjct: 77  MDPQIWGNLPFHLLESILAWLPVSSLLKLR 106


>tr|A9TTQ6|A9TTQ6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97006 PE=4 SV=1
          Length = 780

 Score = 40.4 bits (93), Expect = 0.086
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 538 RIWSSLPEDIIEKVLAWLPLTSVLRFRA 621
           RIWS LPED+I++ LA LP+ S  RFR+
Sbjct: 426 RIWSGLPEDLIDRTLACLPVPSFFRFRS 453