DK956516 |
Clone id |
TST39A01NGRL0025_P04 |
Library |
TST39 |
Length |
633 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_P04. 5' end sequence. |
Accession |
DK956516 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL975Contig1 |
Sequence |
TGCTTCATCCCAGCCTGCTATGGCAGCTTCTCAGCTGCACTCATCATTTTCACCTTGCAT TCGGCAGCAAACACAGAAGATTGTGCGGGAGAAGCAAGGTGTGACATTTTCGCTGGCCAC TCGACAAGGGCTTGCCTTTCCTGTACGTGTTTCCAGTGGCCCTCTTTACGCCATGGCAGC CTCTACTCTGCAGCAACAGGTTGAGGTTTGTGAGAAGCAAGAGGTCCTTGAAAAGGAAGA GCAGGCATCAGGAGCTCAATTGTCTAGGATTGAAATTCGAACTCTACGGGGCTGCAGGCT CGGAATCGCCATGTATCCTGACTTTGTTTATAATGCAGAGGGAGGTGGAGGTCCTGGAAG TGCAGAGGAGCTTCCTGATGGTAAACTGGCAGTTGAATTCGATATCAAGAGTCTTTACAT TCCGGCTGTGGAATGGCGGACCACCAAGTTCCTTGGATTGCCATTGCCCCCTTTCCTTTG CATACAGGTTGTTCCCCAGTCTCTGAAGGGCTTCATCGAGCGGGCCAGAGGAAAGGTGGA GCTGGAGTTCTCAGCCAATTTTTTATTTTCCGTGGGCTCTTTGTATCGTGCTCCGCCTCT TGTGGTGAACACACTGTTGACAACCGAAACAAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ULX3 |
Definition |
sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens |
Align length |
46 |
Score (bit) |
35.8 |
E-value |
0.19 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6EP75 |
Definition |
tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp. japonica |
Align length |
124 |
Score (bit) |
134.0 |
E-value |
6.0e-30 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956516|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0025_P04, 5' (633 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subs... 134 6e-30 tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza... 134 6e-30 tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella paten... 129 1e-28 tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea m... 129 1e-28 tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Popul... 128 2e-28 tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole geno... 125 2e-27 tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment) OS=Physcomit... 124 4e-27 tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella paten... 122 1e-26 tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromos... 107 6e-22 tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein OS=Synec... 101 3e-20 tr|A8HPS9|A8HPS9_CHLRE Putative uncharacterized protein OS=Chlam... 99 2e-19 tr|A2CAI5|A2CAI5_PROM3 Putative uncharacterized protein OS=Proch... 96 2e-18 tr|Q7V858|Q7V858_PROMM Putative uncharacterized protein MTG10.17... 96 2e-18 tr|A2BZJ7|A2BZJ7_PROM1 Putative uncharacterized protein OS=Proch... 94 5e-18 tr|A9BBB2|A9BBB2_PROM4 Putative uncharacterized protein OS=Proch... 91 4e-17 tr|Q46HZ5|Q46HZ5_PROMT Putative uncharacterized protein OS=Proch... 91 8e-17 tr|Q56YA7|Q56YA7_ARATH Putative uncharacterized protein At5g6214... 89 3e-16 tr|B5IJQ2|B5IJQ2_9CHRO Putative uncharacterized protein OS=Cyano... 87 8e-16 tr|Q7VAI6|Q7VAI6_PROMA Uncharacterized conserved protein OS=Proc... 69 3e-10 tr|A8I1H0|A8I1H0_CHLRE Predicted protein (Fragment) OS=Chlamydom... 39 0.34 tr|B2RAR2|B2RAR2_HUMAN cDNA, FLJ95064, highly similar to Homo sa... 36 2.2 tr|Q8S0M1|Q8S0M1_ORYSJ Receptor protein kinase-like OS=Oryza sat... 34 6.4 tr|Q0JH06|Q0JH06_ORYSJ Os01g0892200 protein OS=Oryza sativa subs... 34 6.4 tr|A3A0F6|A3A0F6_ORYSJ Putative uncharacterized protein OS=Oryza... 34 6.4 tr|A2WXU9|A2WXU9_ORYSI Putative uncharacterized protein OS=Oryza... 34 6.4
>tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp. japonica GN=P0135D07.45 PE=2 SV=1 Length = 256
Score = 134 bits (336), Expect = 6e-30 Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 4/124 (3%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 436 +E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+ Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132
Query: 437 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 616 TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+T Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192
Query: 617 LTTE 628 LT+E Sbjct: 193 LTSE 196
>tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08458 PE=4 SV=1 Length = 256
Score = 134 bits (336), Expect = 6e-30 Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 4/124 (3%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 436 +E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+ Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132
Query: 437 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 616 TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+T Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192
Query: 617 LTTE 628 LT+E Sbjct: 193 LTSE 196
>tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163179 PE=4 SV=1 Length = 263
Score = 129 bits (325), Expect = 1e-28 Identities = 62/118 (52%), Positives = 82/118 (69%) Frame = +2
Query: 275 IRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTKFL 454 +RT +GC LG++ YPDFVYNAE A ++ DG+ +V+FD + IP V +RTT L Sbjct: 88 LRTTKGCGLGVSRYPDFVYNAEGGGGRGKAVKMEDGRWSVKFDAAEVNIPDVGFRTTTLL 147
Query: 455 GLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTTE 628 G+PLPP + I++VP+ L+G ++R GKVEL F A F FS G LYR PL+V TLLTTE Sbjct: 148 GIPLPPPIKIEIVPEFLEGIVDRDTGKVELNFLAKFFFSTGPLYRPSPLIVETLLTTE 205
>tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 270
Score = 129 bits (324), Expect = 1e-28 Identities = 65/126 (51%), Positives = 86/126 (68%), Gaps = 6/126 (4%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX------SAEELPDGKLAVEFDIKSLYIPAV 430 +E RT GCRLGIA YPDF YNA+ S E+ G + V+FD+ +LYIP + Sbjct: 85 VEFRTRDGCRLGIARYPDFAYNAQGGRGVGAGRGSKSGEDDGIGTVLVDFDVATLYIPPM 144
Query: 431 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 610 TT+FLGLPLPP+L I ++P++L G I+RA G V+L+F + F FSVGS+Y+APPL V Sbjct: 145 SGATTRFLGLPLPPYLKIDILPEALGGTIDRATGHVDLKFRSRFCFSVGSVYKAPPLFVE 204
Query: 611 TLLTTE 628 T LT+E Sbjct: 205 TTLTSE 210
>tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 237
Score = 128 bits (322), Expect = 2e-28 Identities = 64/124 (51%), Positives = 86/124 (69%), Gaps = 4/124 (3%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGK----LAVEFDIKSLYIPAVEW 436 + +TL GC+LGI+ YPDF YNA+ + + D ++V FD+K+LYIP + Sbjct: 54 VNFKTLGGCKLGISRYPDFEYNAQGGTGTGTCTKAKDSSDLNTVSVSFDMKTLYIPPLTS 113
Query: 437 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 616 TTKFLGLPLPPFL I +VP+ +G I++ GKV+LEF A F FSVG++YRAPPL+V T Sbjct: 114 GTTKFLGLPLPPFLKIDMVPELFQGTIDQDSGKVDLEFMAKFWFSVGTIYRAPPLLVKTR 173
Query: 617 LTTE 628 LT+E Sbjct: 174 LTSE 177
>tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00007419001 PE=4 SV=1 Length = 240
Score = 125 bits (314), Expect = 2e-27 Identities = 66/126 (52%), Positives = 87/126 (69%), Gaps = 6/126 (4%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS--AEELPDGKL----AVEFDIKSLYIPAV 430 ++ RTL C+LGI+ YPDF YNAE + A + D L +V FD+K+LYIP + Sbjct: 56 VKFRTLGACKLGISRYPDFEYNAEGGTGTGTGTAPVVEDNGLKDQVSVCFDLKTLYIPPL 115
Query: 431 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 610 T++FLGLP PPFL I +VP+ +G I R GKV+LEF A FLFSVG++YRAPPL+V Sbjct: 116 TTATSRFLGLPFPPFLRIDIVPELFQGNISRESGKVDLEFKAKFLFSVGNIYRAPPLMVA 175
Query: 611 TLLTTE 628 T+LT+E Sbjct: 176 TVLTSE 181
>tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_138615 PE=4 SV=1 Length = 179
Score = 124 bits (312), Expect = 4e-27 Identities = 59/121 (48%), Positives = 81/121 (66%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 448 +E+RT +GC LG++ YPDFVY+AE A +L DG+ V FD L+IP V +RT Sbjct: 2 VELRTTKGCGLGVSRYPDFVYDAEGGGGSGKAVKLSDGRWRVHFDAAELHIPDVSFRTAT 61
Query: 449 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTTE 628 LG+P+PP + I++V SL+G ++R GK+EL F + F FS Y PPLVV+T+LTTE Sbjct: 62 LLGVPIPPPIRIEIVTDSLEGTVDRDIGKIELRFQSRFYFSATRFYEPPPLVVDTVLTTE 121
Query: 629 T 631 T Sbjct: 122 T 122
>tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172769 PE=4 SV=1 Length = 266
Score = 122 bits (307), Expect = 1e-26 Identities = 59/120 (49%), Positives = 81/120 (67%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 448 + +RT +GC LGI++YPDFVYNAE A +L DG V+FD + IP V +RTTK Sbjct: 87 VVLRTTKGCGLGISVYPDFVYNAEGGGGSGKAVKLSDGCWRVQFDATEINIPDVSFRTTK 146
Query: 449 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTTE 628 L +P+PP + I++VP +L+G ++ GK+ L F + F FS LYR PPLVV+T+LTTE Sbjct: 147 LLSVPIPPPIRIKIVPDTLEGTVDLETGKIVLRFQSKFYFSATDLYRPPPLVVDTVLTTE 206
>tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10 (At5g62140) OS=Arabidopsis thaliana GN=At5g62140 PE=2 SV=1 Length = 241
Score = 107 bits (267), Expect = 6e-22 Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 7/130 (5%) Frame = +2
Query: 260 LSRIEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPD------GKLAVEFDIKSLYI 421 L + +T+ +LGI+ YPDF Y+ +A+++ D +L+V F++ +LYI Sbjct: 51 LYSVSFKTIGTGKLGISRYPDFEYSPLGGSGAGTAKKIDDKNRASNSELSVCFNVATLYI 110
Query: 422 PAVEWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSV-GSLYRAPP 598 P++ +TTKFLG PLPPFL I + P+ +G I + GKVELEF A F F+ G +YRAP Sbjct: 111 PSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQESGKVELEFMAKFFFTAGGGIYRAPA 170
Query: 599 LVVNTLLTTE 628 LVV T+LTTE Sbjct: 171 LVVRTVLTTE 180
>tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein OS=Synechococcus sp. WH 5701 GN=WH5701_04020 PE=4 SV=1 Length = 208
Score = 101 bits (252), Expect = 3e-20 Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 1/120 (0%) Frame = +2
Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS-AEELPDGKLAVEFDIKSLYIPAVEWRTT 445 +++ TL GC L IA YP F Y+A + DG+ + F L IP ++WR+T Sbjct: 9 LQLSTLAGCGLAIAGYPRFRYDARGGGGSAQLGQPSGDGRRPLRFQPDGLSIPPLDWRST 68
Query: 446 KFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTT 625 + LGLPLPP L I + P+ L+G ++ A G + L F A FLF VGSLY APPL+V T L T Sbjct: 69 RVLGLPLPPGLSISIEPEQLEGVLDPATGSLALTFRARFLFRVGSLYCAPPLLVATELVT 128
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