DK956516
Clone id TST39A01NGRL0025_P04
Library
Length 633
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_P04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
TGCTTCATCCCAGCCTGCTATGGCAGCTTCTCAGCTGCACTCATCATTTTCACCTTGCAT
TCGGCAGCAAACACAGAAGATTGTGCGGGAGAAGCAAGGTGTGACATTTTCGCTGGCCAC
TCGACAAGGGCTTGCCTTTCCTGTACGTGTTTCCAGTGGCCCTCTTTACGCCATGGCAGC
CTCTACTCTGCAGCAACAGGTTGAGGTTTGTGAGAAGCAAGAGGTCCTTGAAAAGGAAGA
GCAGGCATCAGGAGCTCAATTGTCTAGGATTGAAATTCGAACTCTACGGGGCTGCAGGCT
CGGAATCGCCATGTATCCTGACTTTGTTTATAATGCAGAGGGAGGTGGAGGTCCTGGAAG
TGCAGAGGAGCTTCCTGATGGTAAACTGGCAGTTGAATTCGATATCAAGAGTCTTTACAT
TCCGGCTGTGGAATGGCGGACCACCAAGTTCCTTGGATTGCCATTGCCCCCTTTCCTTTG
CATACAGGTTGTTCCCCAGTCTCTGAAGGGCTTCATCGAGCGGGCCAGAGGAAAGGTGGA
GCTGGAGTTCTCAGCCAATTTTTTATTTTCCGTGGGCTCTTTGTATCGTGCTCCGCCTCT
TGTGGTGAACACACTGTTGACAACCGAAACAAC
■■Homology search results ■■ -
sp_hit_id Q9ULX3
Definition sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens
Align length 46
Score (bit) 35.8
E-value 0.19
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956516|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_P04, 5'
(633 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens GN... 36 0.19
sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii GN... 35 0.32
sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca fascicul... 33 0.93
sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=N... 32 3.5
sp|P18160|KYK1_DICDI Dual specificity protein kinase dpyk1 OS=Di... 31 4.7

>sp|Q9ULX3|NOB1_HUMAN RNA-binding protein NOB1 OS=Homo sapiens
GN=NOB1 PE=1 SV=1
Length = 412

Score = 35.8 bits (81), Expect = 0.19
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2

Query: 401 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 267
++ + H E PLH HLP K Q+T + AC P EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPYKPKPPQETEKGHSACEPENLEFSS 156


>sp|Q5RBB3|NOB1_PONAB RNA-binding protein NOB1 OS=Pongo abelii
GN=NOB1 PE=2 SV=1
Length = 411

Score = 35.0 bits (79), Expect = 0.32
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -2

Query: 401 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 267
++ + H E PLH HLP K Q+T + AC P EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPSKPKPPQETEKGHPACEPENLEFSS 156


>sp|Q4R537|NOB1_MACFA RNA-binding protein NOB1 OS=Macaca
fascicularis GN=NOB1 PE=2 SV=1
Length = 412

Score = 33.5 bits (75), Expect = 0.93
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2

Query: 401 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWR-FRACSPVEFEFQS 267
++ + H E PLH HLP K Q+ + AC P EF S
Sbjct: 111 KVSSSIQHPETPLHISGFHLPSKPKSPQEAEKGHPACEPENLEFSS 156


>sp|Q3T042|NOB1_BOVIN RNA-binding protein NOB1 OS=Bos taurus GN=NOB1
PE=2 SV=1
Length = 413

Score = 31.6 bits (70), Expect = 3.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -2

Query: 401 RIQLPVYHQEAPLHFQDLHLPLHYKQSQDTWRFR--ACSPVEFEFQS 267
++ + H E PLH HLP K ++T R A P + EF S
Sbjct: 111 KVSSSIQHPETPLHVSGFHLPSKPKPPRETVEHRHPASEPEDLEFSS 157


>sp|P18160|KYK1_DICDI Dual specificity protein kinase dpyk1
OS=Dictyostelium discoideum GN=splA PE=1 SV=3
Length = 2410

Score = 31.2 bits (69), Expect = 4.7
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +1

Query: 469 PFPLHTGCSPVSEGLHRAGQRKGGAGV---LSQFFIFRG--LFVSCSASCGEHT 615
PF H G P S G G++ GG+ + FF F G + SC CG +T
Sbjct: 1601 PFIKHIGREPKSYGFSSEGEKYGGSEIGEPYGPFFFFDGDSIASSCVIGCGINT 1654


tr_hit_id Q6EP75
Definition tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp. japonica
Align length 124
Score (bit) 134.0
E-value 6.0e-30
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956516|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_P04, 5'
(633 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subs... 134 6e-30
tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza... 134 6e-30
tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella paten... 129 1e-28
tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea m... 129 1e-28
tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Popul... 128 2e-28
tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole geno... 125 2e-27
tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment) OS=Physcomit... 124 4e-27
tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella paten... 122 1e-26
tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromos... 107 6e-22
tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein OS=Synec... 101 3e-20
tr|A8HPS9|A8HPS9_CHLRE Putative uncharacterized protein OS=Chlam... 99 2e-19
tr|A2CAI5|A2CAI5_PROM3 Putative uncharacterized protein OS=Proch... 96 2e-18
tr|Q7V858|Q7V858_PROMM Putative uncharacterized protein MTG10.17... 96 2e-18
tr|A2BZJ7|A2BZJ7_PROM1 Putative uncharacterized protein OS=Proch... 94 5e-18
tr|A9BBB2|A9BBB2_PROM4 Putative uncharacterized protein OS=Proch... 91 4e-17
tr|Q46HZ5|Q46HZ5_PROMT Putative uncharacterized protein OS=Proch... 91 8e-17
tr|Q56YA7|Q56YA7_ARATH Putative uncharacterized protein At5g6214... 89 3e-16
tr|B5IJQ2|B5IJQ2_9CHRO Putative uncharacterized protein OS=Cyano... 87 8e-16
tr|Q7VAI6|Q7VAI6_PROMA Uncharacterized conserved protein OS=Proc... 69 3e-10
tr|A8I1H0|A8I1H0_CHLRE Predicted protein (Fragment) OS=Chlamydom... 39 0.34
tr|B2RAR2|B2RAR2_HUMAN cDNA, FLJ95064, highly similar to Homo sa... 36 2.2
tr|Q8S0M1|Q8S0M1_ORYSJ Receptor protein kinase-like OS=Oryza sat... 34 6.4
tr|Q0JH06|Q0JH06_ORYSJ Os01g0892200 protein OS=Oryza sativa subs... 34 6.4
tr|A3A0F6|A3A0F6_ORYSJ Putative uncharacterized protein OS=Oryza... 34 6.4
tr|A2WXU9|A2WXU9_ORYSI Putative uncharacterized protein OS=Oryza... 34 6.4

>tr|Q6EP75|Q6EP75_ORYSJ Os02g0677600 protein OS=Oryza sativa subsp.
japonica GN=P0135D07.45 PE=2 SV=1
Length = 256

Score = 134 bits (336), Expect = 6e-30
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 4/124 (3%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 436
+E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+
Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132

Query: 437 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 616
TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+T
Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192

Query: 617 LTTE 628
LT+E
Sbjct: 193 LTSE 196


>tr|A2X8A0|A2X8A0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08458 PE=4 SV=1
Length = 256

Score = 134 bits (336), Expect = 6e-30
Identities = 68/124 (54%), Positives = 88/124 (70%), Gaps = 4/124 (3%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX----SAEELPDGKLAVEFDIKSLYIPAVEW 436
+E RT GCRLGI+ YPDF YNA+ S E+ G + VEFD+ SLYIPA+
Sbjct: 75 VEFRTRDGCRLGISRYPDFAYNAQGGRGVGVVASSGED--SGTVLVEFDVSSLYIPAMSG 132

Query: 437 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 616
TTKFLGLPLPPFL I ++P++L+G I+ G+V+L+F + F FSVGS+YRAPPL V+T
Sbjct: 133 ATTKFLGLPLPPFLKIDILPEALRGNIDPTSGQVDLKFRSRFCFSVGSIYRAPPLFVDTT 192

Query: 617 LTTE 628
LT+E
Sbjct: 193 LTSE 196


>tr|A9S6Y3|A9S6Y3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_163179 PE=4 SV=1
Length = 263

Score = 129 bits (325), Expect = 1e-28
Identities = 62/118 (52%), Positives = 82/118 (69%)
Frame = +2

Query: 275 IRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTKFL 454
+RT +GC LG++ YPDFVYNAE A ++ DG+ +V+FD + IP V +RTT L
Sbjct: 88 LRTTKGCGLGVSRYPDFVYNAEGGGGRGKAVKMEDGRWSVKFDAAEVNIPDVGFRTTTLL 147

Query: 455 GLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTTE 628
G+PLPP + I++VP+ L+G ++R GKVEL F A F FS G LYR PL+V TLLTTE
Sbjct: 148 GIPLPPPIKIEIVPEFLEGIVDRDTGKVELNFLAKFFFSTGPLYRPSPLIVETLLTTE 205


>tr|B6U3W9|B6U3W9_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 270

Score = 129 bits (324), Expect = 1e-28
Identities = 65/126 (51%), Positives = 86/126 (68%), Gaps = 6/126 (4%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXX------SAEELPDGKLAVEFDIKSLYIPAV 430
+E RT GCRLGIA YPDF YNA+ S E+ G + V+FD+ +LYIP +
Sbjct: 85 VEFRTRDGCRLGIARYPDFAYNAQGGRGVGAGRGSKSGEDDGIGTVLVDFDVATLYIPPM 144

Query: 431 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 610
TT+FLGLPLPP+L I ++P++L G I+RA G V+L+F + F FSVGS+Y+APPL V
Sbjct: 145 SGATTRFLGLPLPPYLKIDILPEALGGTIDRATGHVDLKFRSRFCFSVGSVYKAPPLFVE 204

Query: 611 TLLTTE 628
T LT+E
Sbjct: 205 TTLTSE 210


>tr|A9PEN1|A9PEN1_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 237

Score = 128 bits (322), Expect = 2e-28
Identities = 64/124 (51%), Positives = 86/124 (69%), Gaps = 4/124 (3%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGK----LAVEFDIKSLYIPAVEW 436
+ +TL GC+LGI+ YPDF YNA+ + + D ++V FD+K+LYIP +
Sbjct: 54 VNFKTLGGCKLGISRYPDFEYNAQGGTGTGTCTKAKDSSDLNTVSVSFDMKTLYIPPLTS 113

Query: 437 RTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTL 616
TTKFLGLPLPPFL I +VP+ +G I++ GKV+LEF A F FSVG++YRAPPL+V T
Sbjct: 114 GTTKFLGLPLPPFLKIDMVPELFQGTIDQDSGKVDLEFMAKFWFSVGTIYRAPPLLVKTR 173

Query: 617 LTTE 628
LT+E
Sbjct: 174 LTSE 177


>tr|A7QVM0|A7QVM0_VITVI Chromosome chr16 scaffold_189, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00007419001
PE=4 SV=1
Length = 240

Score = 125 bits (314), Expect = 2e-27
Identities = 66/126 (52%), Positives = 87/126 (69%), Gaps = 6/126 (4%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS--AEELPDGKL----AVEFDIKSLYIPAV 430
++ RTL C+LGI+ YPDF YNAE + A + D L +V FD+K+LYIP +
Sbjct: 56 VKFRTLGACKLGISRYPDFEYNAEGGTGTGTGTAPVVEDNGLKDQVSVCFDLKTLYIPPL 115

Query: 431 EWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVN 610
T++FLGLP PPFL I +VP+ +G I R GKV+LEF A FLFSVG++YRAPPL+V
Sbjct: 116 TTATSRFLGLPFPPFLRIDIVPELFQGNISRESGKVDLEFKAKFLFSVGNIYRAPPLMVA 175

Query: 611 TLLTTE 628
T+LT+E
Sbjct: 176 TVLTSE 181


>tr|A9T1A6|A9T1A6_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_138615 PE=4 SV=1
Length = 179

Score = 124 bits (312), Expect = 4e-27
Identities = 59/121 (48%), Positives = 81/121 (66%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 448
+E+RT +GC LG++ YPDFVY+AE A +L DG+ V FD L+IP V +RT
Sbjct: 2 VELRTTKGCGLGVSRYPDFVYDAEGGGGSGKAVKLSDGRWRVHFDAAELHIPDVSFRTAT 61

Query: 449 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTTE 628
LG+P+PP + I++V SL+G ++R GK+EL F + F FS Y PPLVV+T+LTTE
Sbjct: 62 LLGVPIPPPIRIEIVTDSLEGTVDRDIGKIELRFQSRFYFSATRFYEPPPLVVDTVLTTE 121

Query: 629 T 631
T
Sbjct: 122 T 122


>tr|A9TYZ3|A9TYZ3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172769 PE=4 SV=1
Length = 266

Score = 122 bits (307), Expect = 1e-26
Identities = 59/120 (49%), Positives = 81/120 (67%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPDGKLAVEFDIKSLYIPAVEWRTTK 448
+ +RT +GC LGI++YPDFVYNAE A +L DG V+FD + IP V +RTTK
Sbjct: 87 VVLRTTKGCGLGISVYPDFVYNAEGGGGSGKAVKLSDGCWRVQFDATEINIPDVSFRTTK 146

Query: 449 FLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTTE 628
L +P+PP + I++VP +L+G ++ GK+ L F + F FS LYR PPLVV+T+LTTE
Sbjct: 147 LLSVPIPPPIRIKIVPDTLEGTVDLETGKIVLRFQSKFYFSATDLYRPPPLVVDTVLTTE 206


>tr|Q9FIS4|Q9FIS4_ARATH Arabidopsis thaliana genomic DNA, chromosome
5, P1 clone:MTG10 (At5g62140) OS=Arabidopsis thaliana
GN=At5g62140 PE=2 SV=1
Length = 241

Score = 107 bits (267), Expect = 6e-22
Identities = 58/130 (44%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Frame = +2

Query: 260 LSRIEIRTLRGCRLGIAMYPDFVYNAEXXXXXXSAEELPD------GKLAVEFDIKSLYI 421
L + +T+ +LGI+ YPDF Y+ +A+++ D +L+V F++ +LYI
Sbjct: 51 LYSVSFKTIGTGKLGISRYPDFEYSPLGGSGAGTAKKIDDKNRASNSELSVCFNVATLYI 110

Query: 422 PAVEWRTTKFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSV-GSLYRAPP 598
P++ +TTKFLG PLPPFL I + P+ +G I + GKVELEF A F F+ G +YRAP
Sbjct: 111 PSLTSQTTKFLGFPLPPFLKIDISPEIFQGTINQESGKVELEFMAKFFFTAGGGIYRAPA 170

Query: 599 LVVNTLLTTE 628
LVV T+LTTE
Sbjct: 171 LVVRTVLTTE 180


>tr|A3YTP4|A3YTP4_9SYNE Putative uncharacterized protein
OS=Synechococcus sp. WH 5701 GN=WH5701_04020 PE=4 SV=1
Length = 208

Score = 101 bits (252), Expect = 3e-20
Identities = 54/120 (45%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Frame = +2

Query: 269 IEIRTLRGCRLGIAMYPDFVYNAEXXXXXXS-AEELPDGKLAVEFDIKSLYIPAVEWRTT 445
+++ TL GC L IA YP F Y+A + DG+ + F L IP ++WR+T
Sbjct: 9 LQLSTLAGCGLAIAGYPRFRYDARGGGGSAQLGQPSGDGRRPLRFQPDGLSIPPLDWRST 68

Query: 446 KFLGLPLPPFLCIQVVPQSLKGFIERARGKVELEFSANFLFSVGSLYRAPPLVVNTLLTT 625
+ LGLPLPP L I + P+ L+G ++ A G + L F A FLF VGSLY APPL+V T L T
Sbjct: 69 RVLGLPLPPGLSISIEPEQLEGVLDPATGSLALTFRARFLFRVGSLYCAPPLLVATELVT 128