| DK956525 |
| Clone id |
TST39A01NGRL0025_P13 |
| Library |
TST39 |
| Length |
576 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0025_P13. 5' end sequence. |
| Accession |
DK956525 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL154Contig1 |
| Sequence |
GAGGGATCGAGGGCGGGCTTCGGGGTTGCTGCAGAAACCCTAGTCGAAGGTAAGCTTGAG
CTTTGGGTCTGTTAGCGATGGGGAGGGTCATCAGAGGCCAAAGGAAGGGAGCAGGCTCGA
TCTTTAGAGCCCACACACACAGGCGCAAGGGCCCTGCTCGTTTTAGATCTCTAGACTACT
CAGAAAGTAATGGGTACATAAAGGGTGTCGTCTCCGACATTGTTCACGATTCTGGCAGAG
GAGCACCTCTCTGCAAGGTGACCTTCCGCCACCCCTTCCGCTTTAAACACCAGAATGAGC
GCTTCATTGCTGCAGAGGGTATGTACTCTGGCCAGTTTGTTTACTGTGGAAAGAAGGCAA
CCCTGTCCATTGGCAATGTTCTTCCTCTCAAGTCGGTGCCGGAGGGCGCTGTGGTTTGTA
ATGTCGAACAGCGAGTGGGGGATCGTGGCTCTTTTGCTAGAGCTTCTGGTGACTATGTAA
TCGTTGTCAGCCATAATCCGGATAACAACACCACACGTATCAAGCTTCCCTCTGGAGCCA
AGAAGATTGTGCCAAGTGGTTGCCGTGCAATGATTG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P29766 |
| Definition |
sp|P29766|RL8_SOLLC 60S ribosomal protein L8 OS=Solanum lycopersicum |
| Align length |
163 |
| Score (bit) |
286.0 |
| E-value |
4.0e-77 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9RZ45 |
| Definition |
tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
163 |
| Score (bit) |
303.0 |
| E-value |
4.0e-81 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956525|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0025_P13, 5'
(576 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella paten... 303 4e-81
tr|Q2QNF3|Q2QNF3_ORYSJ Os12g0567700 protein OS=Oryza sativa subs... 288 1e-76
tr|A7QDZ9|A7QDZ9_VITVI Chromosome chr4 scaffold_83, whole genome... 288 1e-76
tr|A2ZLS7|A2ZLS7_ORYSI Putative uncharacterized protein OS=Oryza... 288 1e-76
tr|Q2XTD6|Q2XTD6_SOLTU Ribosomal protein L2-like OS=Solanum tube... 286 4e-76
tr|B6TGT0|B6TGT0_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 286 4e-76
tr|B4F9R4|B4F9R4_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 286 4e-76
tr|A7P133|A7P133_VITVI Chromosome chr19 scaffold_4, whole genome... 286 7e-76
tr|A5AW13|A5AW13_VITVI Putative uncharacterized protein (Chromos... 285 1e-75
tr|B6TIQ9|B6TIQ9_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2... 285 2e-75
tr|A9PBZ5|A9PBZ5_POPTR Putative uncharacterized protein OS=Popul... 282 8e-75
tr|A9PCT0|A9PCT0_POPTR Putative uncharacterized protein OS=Popul... 281 2e-74
tr|Q9FEZ7|Q9FEZ7_SOYBN Ribosomal protein L2 OS=Glycine max GN=rp... 275 1e-72
tr|Q6EMI5|Q6EMI5_BRAJU Ribosomal protein L2 (Fragment) OS=Brassi... 275 1e-72
tr|B4FJS6|B4FJS6_MAIZE Putative uncharacterized protein OS=Zea m... 252 1e-65
tr|Q2HRD6|Q2HRD6_MEDTR Translation protein SH3-like OS=Medicago ... 246 8e-64
tr|B6RB82|B6RB82_HALDI Ribosomal protein l OS=Haliotis discus di... 240 5e-62
tr|B2YI29|B2YI29_9BILA Putative 60S ribosomal protein RPL8 (Frag... 236 7e-61
tr|Q56FH5|Q56FH5_LYSTE Ribosomal protein L8 OS=Lysiphlebus testa... 236 9e-61
tr|B2WK16|B2WK16_PYRTR 60S ribosomal protein L2 OS=Pyrenophora t... 235 1e-60
tr|A8IVK1|A8IVK1_CHLRE Ribosomal protein L8 OS=Chlamydomonas rei... 234 2e-60
tr|A2I3X6|A2I3X6_MACHI Putative ribosomal protein L8e OS=Maconel... 234 3e-60
tr|A8UG01|A8UG01_9ANNE Ribosomal protein rpl8 OS=Eurythoe compla... 233 4e-60
tr|B4KYM8|B4KYM8_DROMO GI12472 OS=Drosophila mojavensis GN=GI124... 233 7e-60
tr|Q29FA8|Q29FA8_DROPS GA11728 OS=Drosophila pseudoobscura pseud... 232 1e-59
tr|B6LNN3|B6LNN3_BRAFL Putative uncharacterized protein OS=Branc... 232 1e-59
tr|B4N386|B4N386_DROWI GK12506 OS=Drosophila willistoni GN=GK125... 232 1e-59
tr|B4LDV0|B4LDV0_DROVI GJ12374 OS=Drosophila virilis GN=GJ12374 ... 232 1e-59
tr|B5KFK9|B5KFK9_TAEGU Putative ribosomal protein L8 OS=Taeniopy... 231 2e-59
tr|B5FXQ0|B5FXQ0_TAEGU Putative ribosomal protein L8 OS=Taeniopy... 231 2e-59
>tr|A9RZ45|A9RZ45_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_161945 PE=4 SV=1
Length = 260
Score = 303 bits (776), Expect = 4e-81
Identities = 144/163 (88%), Positives = 155/163 (95%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGSIFR+HTHRRKGPA+FRSLDY+E NGYIKGVVS++VHDSGRGAPLCKVTF
Sbjct: 4 VIRAQRKGAGSIFRSHTHRRKGPAQFRSLDYAERNGYIKGVVSEVVHDSGRGAPLCKVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFRFK Q ERFIAAEGMYSGQFVYCGKKATLSIGNVLPL+SVPEGAVVCNVE R+GDR
Sbjct: 64 RHPFRFKRQKERFIAAEGMYSGQFVYCGKKATLSIGNVLPLRSVPEGAVVCNVEHRMGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G+FARASGDY IVVSHN D+ TTRIKLPSGAKK+VPSGCRAM+
Sbjct: 124 GAFARASGDYAIVVSHNVDSGTTRIKLPSGAKKVVPSGCRAMV 166
>tr|Q2QNF3|Q2QNF3_ORYSJ Os12g0567700 protein OS=Oryza sativa subsp.
japonica GN=Os12g0567700 PE=4 SV=1
Length = 261
Score = 288 bits (737), Expect = 1e-76
Identities = 133/163 (81%), Positives = 149/163 (91%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV+DI+HD GRGAPL KVTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCG++ATLSIGNVLP++SVPEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IV+SHNPDN T+RIKLPSGAKKIVPS CRAMI
Sbjct: 124 GVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMI 166
>tr|A7QDZ9|A7QDZ9_VITVI Chromosome chr4 scaffold_83, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036802001
PE=4 SV=1
Length = 260
Score = 288 bits (737), Expect = 1e-76
Identities = 133/163 (81%), Positives = 149/163 (91%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV++I+HD GRGAPL +VTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCGKKATL +GNVLPL+S+PEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLIVGNVLPLRSIPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IVVSHNPDN T+RIKLPSGAKKIVPSGCRAMI
Sbjct: 124 GVFARASGDYAIVVSHNPDNGTSRIKLPSGAKKIVPSGCRAMI 166
>tr|A2ZLS7|A2ZLS7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_38771 PE=4 SV=1
Length = 261
Score = 288 bits (737), Expect = 1e-76
Identities = 133/163 (81%), Positives = 149/163 (91%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV+DI+HD GRGAPL KVTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCG++ATLSIGNVLP++SVPEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IV+SHNPDN T+RIKLPSGAKKIVPS CRAMI
Sbjct: 124 GVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMI 166
>tr|Q2XTD6|Q2XTD6_SOLTU Ribosomal protein L2-like OS=Solanum
tuberosum PE=2 SV=1
Length = 261
Score = 286 bits (733), Expect = 4e-76
Identities = 128/163 (78%), Positives = 149/163 (91%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFR+LD+ E NGY+KGV+++++HD GRGAPL +VTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRTLDFGERNGYLKGVITEVIHDPGRGAPLARVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCGKKATL +GNVLPL+S+PEGAVVCNVE +VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGKKATLMVGNVLPLRSIPEGAVVCNVEHKVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FAR SGDY IV+SHNPDN TTR+KLPSGAKKIVPSGCRAMI
Sbjct: 124 GVFARCSGDYAIVISHNPDNGTTRVKLPSGAKKIVPSGCRAMI 166
>tr|B6TGT0|B6TGT0_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2
SV=1
Length = 261
Score = 286 bits (733), Expect = 4e-76
Identities = 131/163 (80%), Positives = 148/163 (90%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV+D++HD GRGAPL KVTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCG++ATLSIGNVLPL+ +PEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPLRGIPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IV+SHNPDN T+RIKLPSGAKKIVPS CRAMI
Sbjct: 124 GVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMI 166
>tr|B4F9R4|B4F9R4_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2
SV=1
Length = 260
Score = 286 bits (733), Expect = 4e-76
Identities = 131/163 (80%), Positives = 148/163 (90%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV+D++HD GRGAPL KVTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCG++ATLSIGNVLPL+ +PEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPLRGIPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IV+SHNPDN T+RIKLPSGAKKIVPS CRAMI
Sbjct: 124 GVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMI 166
>tr|A7P133|A7P133_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027466001
PE=4 SV=1
Length = 260
Score = 286 bits (731), Expect = 7e-76
Identities = 130/163 (79%), Positives = 148/163 (90%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV+DI+HD GRGAPL +VTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLARVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCGKKA L +GNVLP++S+PEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGKKANLVVGNVLPVRSIPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IVVSHNPDN T+RIKLPSGAKKI+PSGCRAM+
Sbjct: 124 GVFARASGDYAIVVSHNPDNGTSRIKLPSGAKKIIPSGCRAMV 166
>tr|A5AW13|A5AW13_VITVI Putative uncharacterized protein (Chromosome
chr12 scaffold_36, whole genome shotgun sequence)
OS=Vitis vinifera GN=GSVIVT00026101001 PE=4 SV=1
Length = 260
Score = 285 bits (730), Expect = 1e-75
Identities = 132/163 (80%), Positives = 148/163 (90%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VIR QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV++I+HD GRGAPL +VTF
Sbjct: 4 VIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCGKKA L +GNVLPL+S+PEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGKKANLVVGNVLPLRSIPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IVVSHNPDN T+RIKLPSGAKKIVPSGCRAMI
Sbjct: 124 GVFARASGDYSIVVSHNPDNGTSRIKLPSGAKKIVPSGCRAMI 166
>tr|B6TIQ9|B6TIQ9_MAIZE 60S ribosomal protein L2 OS=Zea mays PE=2
SV=1
Length = 261
Score = 285 bits (728), Expect = 2e-75
Identities = 130/163 (79%), Positives = 147/163 (90%)
Frame = +3
Query: 87 VIRGQRKGAGSIFRAHTHRRKGPARFRSLDYSESNGYIKGVVSDIVHDSGRGAPLCKVTF 266
VI QRKGAGS+F++HTH RKGPARFRSLD+ E NGY+KGVV+D++HD GRGAPL KVTF
Sbjct: 4 VIHAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTF 63
Query: 267 RHPFRFKHQNERFIAAEGMYSGQFVYCGKKATLSIGNVLPLKSVPEGAVVCNVEQRVGDR 446
RHPFR+KHQ E F+AAEGMY+GQFVYCG++ATLSIGNVLPL+ +PEGAVVCNVE VGDR
Sbjct: 64 RHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPLRGIPEGAVVCNVEHHVGDR 123
Query: 447 GSFARASGDYVIVVSHNPDNNTTRIKLPSGAKKIVPSGCRAMI 575
G FARASGDY IV+SHNPDN T+RIKLPSGAKKIVPS CRAMI
Sbjct: 124 GVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMI 166
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