NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956539
Clone id TST39A01NGRL0026_A03
Library
Length 654
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_A03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGTAAACCGAGTCACGGCTCTGCTTATCGCTTAGACTTGCGCAGGCAGAGCTCTCTGCTG
CTGCAAGTCTAGGCTAAGCTTAGCTGGGCTCTCCCCTCGCTCTTCCAGGAGCCTGCTCTC
TCGCCTTTCTCCGATCTTGTGCCCTGTCGCGGTTTTTCTTTGTGCACCATTCTCAGGAAT
GGCTGCAATGGCAAAGTCTTGTCTTGACAAGACAACTGCTTTACAGGCCTCACCGTTTAG
GCAGGATGGAGTTGCCTCCTCAGCGAAGTGTGGACAACATGCAATTCTAAGCATGCCCCT
CCACCAGAGTAAAACCAGAAAGTTGAGACCTGCGAGTTTTGATAAGTTGCCAACACTAAG
TTTGCGCAAGGGGAAGGCTGTTTTGCCACATGGAACATGGAGGACTATATCAGCAATTGC
GGCTCCTATCGCACCGCCCCTGAGTGATCCTTCGTACAGAGCAAAGCTGGCGGAAGAGTA
TGGCTTTTCTCAAATTGGTGAGCCCGTTCCTCCAAATGTGACACTGAAGAATGTGATGGA
CTCTTTGCCTCCAGAGGTGTTTGAGATTAACAACATGAAGGCATGGAGGACTGTAGCTAT
CACGGTTACTGCCTATGCAGCAGGGCTTTTTATGATTGCAAAGGCACCCTGGTA
■■Homology search results ■■ -
sp_hit_id P48627
Definition sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus
Align length 65
Score (bit) 98.6
E-value 3.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956539|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_A03, 5'
         (654 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplast...    99   3e-20
sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplast...    96   2e-19
sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplast...    94   8e-19
sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast...    92   2e-18
sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp. ...    39   0.031
sp|Q54794|DESA_SPIPL Fatty acid desaturase OS=Spirulina platensi...    37   0.090
sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabid...    31   6.5  

>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic
           OS=Brassica napus PE=2 SV=1
          Length = 443

 Score = 98.6 bits (244), Expect = 3e-20
 Identities = 44/65 (67%), Positives = 57/65 (87%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +LAE YGF QIG+ +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+YA GLFMI
Sbjct: 80  REQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMI 139

Query: 638 AKAPW 652
           AKAPW
Sbjct: 140 AKAPW 144


>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic
           OS=Glycine max PE=2 SV=1
          Length = 424

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 42/66 (63%), Positives = 58/66 (87%)
 Frame = +2

Query: 455 YRAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFM 634
           YR +LAE+YGF Q+GEP+  +VTLK+V++ LP EVFEI+++KAW++V I+VT+YA GLFM
Sbjct: 78  YRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFM 137

Query: 635 IAKAPW 652
           I+KAPW
Sbjct: 138 ISKAPW 143


>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic
           OS=Spinacia oleracea GN=FAD6 PE=1 SV=1
          Length = 447

 Score = 93.6 bits (231), Expect = 8e-19
 Identities = 41/63 (65%), Positives = 54/63 (85%)
 Frame = +2

Query: 464 KLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAK 643
           +LAE YGF QIGEP+P +VT+++++ SLP +VFEIN+ KAW TV I+VT+YA G+FMIAK
Sbjct: 87  QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAK 146

Query: 644 APW 652
           APW
Sbjct: 147 APW 149


>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic
           OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2
          Length = 448

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 42/65 (64%), Positives = 55/65 (84%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +LAE YGF QIGE +P NVTLK++MD+LP EVFEI+++KA ++V I+VT+Y  GLFMI
Sbjct: 85  REQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMI 144

Query: 638 AKAPW 652
           AK+PW
Sbjct: 145 AKSPW 149


>sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp.
           (strain PCC 6803) GN=desA PE=3 SV=1
          Length = 351

 Score = 38.5 bits (88), Expect = 0.031
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +2

Query: 515 NVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAKAPW 652
           ++ L++++ +LP E FE    KAW +V IT+ A A G   I   PW
Sbjct: 23  DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPW 68


>sp|Q54794|DESA_SPIPL Fatty acid desaturase OS=Spirulina platensis
           GN=desA PE=3 SV=1
          Length = 351

 Score = 37.0 bits (84), Expect = 0.090
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 506 VPPNVTLK-NVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAKAPW 652
           VP ++ L+ +++++LP  VF  +  KAW TV I V     G   IA APW
Sbjct: 18  VPSDLPLEEDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPW 67


>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43
           OS=Arabidopsis thaliana GN=EMB2301 PE=2 SV=2
          Length = 365

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 218 QLSCQDKTLPLQPFLRMVHKEKPRQ-GTRSEKGERAGSWKSEGRAQLSLA*TCSSRELCL 42
           Q  C+  T P   +    HK+K    GTR+ +   AG WK+ GR ++  +   + R + +
Sbjct: 62  QEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS---NGRRIGM 118

Query: 41  RKS 33
           RK+
Sbjct: 119 RKT 121
tr_hit_id A9TJT1
Definition tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 105.0
E-value 3.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956539|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_A03, 5'
         (654 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella paten...   105   3e-21
tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea...   101   3e-20
tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Popul...   101   5e-20
tr|Q6DUV9|Q6DUV9_BRANA Omega-6 desaturase OS=Brassica napus PE=2...    99   3e-19
tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4...    98   4e-19
tr|Q6DT48|Q6DT48_ARALP AT4G30950 (Fragment) OS=Arabidopsis lyrat...    98   4e-19
tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplas...    98   5e-19
tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase OS=...    97   9e-19
tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase...    96   1e-18
tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase, c...    95   4e-18
tr|B8BB37|B8BB37_ORYSI Putative uncharacterized protein OS=Oryza...    95   4e-18
tr|A3BTJ3|A3BTJ3_ORYSJ Putative uncharacterized protein OS=Oryza...    95   4e-18
tr|B6TGK8|B6TGK8_MAIZE Putative uncharacterized protein OS=Zea m...    94   9e-18
tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Ol...    90   1e-16
tr|Q9AXY4|Q9AXY4_BRAOL Omega 6 reductase (Fragment) OS=Brassica ...    84   6e-15
tr|A3QQP5|A3QQP5_MESVI Chloroplast omega-6 fatty acid desaturase...    82   4e-14
tr|Q9AXY2|Q9AXY2_BRANA Omega 6 reductase (Fragment) OS=Brassica ...    78   4e-13
tr|Q9AXY3|Q9AXY3_BRACM Omega 6 reductase (Fragment) OS=Brassica ...    76   2e-12
tr|Q9AXY5|Q9AXY5_BRANA Omega 6 reductase (Fragment) OS=Brassica ...    75   3e-12
tr|Q9SBU4|Q9SBU4_CHLSW Chloroplast w6 desaturase OS=Chlamydomona...    71   5e-11
tr|Q9C600|Q9C600_ARATH Omega 6 reductase (Fragment) OS=Arabidops...    70   9e-11
tr|O48663|O48663_CHLRE Chloroplast w6 desaturase (Omega-6-FAD, c...    63   2e-08
tr|A9SI95|A9SI95_PHYPA Predicted protein (Fragment) OS=Physcomit...    60   2e-07
tr|A7R2X6|A7R2X6_VITVI Chromosome undetermined scaffold_462, who...    53   2e-05
tr|Q9ZSV8|Q9ZSV8_ACEAT Putative chloroplast desaturase (Fragment...    52   2e-05
tr|A9SCR5|A9SCR5_PHYPA Predicted protein (Fragment) OS=Physcomit...    52   4e-05
tr|Q55231|Q55231_SYNP2 Delta 12 desaturase OS=Synechococcus sp. ...    49   3e-04
tr|A0ZMU5|A0ZMU5_NODSP Fatty acid desaturase OS=Nodularia spumig...    45   0.005
tr|B0C0E1|B0C0E1_ACAM1 Fatty acid desaturase (Delta(12) desatura...    44   0.007
tr|B1WXI5|B1WXI5_CYAA5 Fatty acid desaturase OS=Cyanothece (stra...    44   0.009

>tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222981 PE=4 SV=1
          Length = 454

 Score =  105 bits (261), Expect = 3e-21
 Identities = 47/65 (72%), Positives = 58/65 (89%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +LAEEYGF+QIGEPVP +VTLK V+DS P EVFEIN++KAW+T+AI+V +Y+ GLFMI
Sbjct: 92  RQRLAEEYGFTQIGEPVPADVTLKKVIDSFPSEVFEINDLKAWKTIAISVASYSLGLFMI 151

Query: 638 AKAPW 652
           AKAPW
Sbjct: 152 AKAPW 156


>tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 460

 Score =  101 bits (252), Expect = 3e-20
 Identities = 45/65 (69%), Positives = 58/65 (89%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +++E+YGF+QIGEPVP N+ LKNV+DSLP EVFEI++ KAW+TVAI+V AY+ GLF+I
Sbjct: 98  RNRISEKYGFTQIGEPVPDNIILKNVIDSLPQEVFEIDDTKAWKTVAISVAAYSLGLFLI 157

Query: 638 AKAPW 652
           AKAPW
Sbjct: 158 AKAPW 162


>tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 444

 Score =  101 bits (251), Expect = 5e-20
 Identities = 44/66 (66%), Positives = 58/66 (87%)
 Frame = +2

Query: 455 YRAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFM 634
           YR +LAE YGF +IGEP+P N+TLK VMD+LP +VFEI++MKAW++V ++VT+YA GLFM
Sbjct: 81  YRKQLAESYGFRKIGEPLPDNITLKGVMDTLPKKVFEIDDMKAWKSVLVSVTSYAFGLFM 140

Query: 635 IAKAPW 652
           I+KAPW
Sbjct: 141 ISKAPW 146


>tr|Q6DUV9|Q6DUV9_BRANA Omega-6 desaturase OS=Brassica napus PE=2
           SV=1
          Length = 443

 Score = 98.6 bits (244), Expect = 3e-19
 Identities = 44/65 (67%), Positives = 57/65 (87%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +LAE YGF QIG+ +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+YA GLFMI
Sbjct: 80  REQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMI 139

Query: 638 AKAPW 652
           AKAPW
Sbjct: 140 AKAPW 144


>tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4
           SV=1
          Length = 443

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 44/65 (67%), Positives = 57/65 (87%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +LAE YGF QIG+ +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+YA GLFMI
Sbjct: 80  REQLAESYGFKQIGQNLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMI 139

Query: 638 AKAPW 652
           AKAPW
Sbjct: 140 AKAPW 144


>tr|Q6DT48|Q6DT48_ARALP AT4G30950 (Fragment) OS=Arabidopsis lyrata
           subsp. petraea PE=4 SV=1
          Length = 203

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +LAE YGF QIGE +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+Y  GLFMI
Sbjct: 50  REQLAESYGFKQIGENLPDNVTLKDIMDTLPKEVFEIDDLKAWKSVLISVTSYTLGLFMI 109

Query: 638 AKAPW 652
           AKAPW
Sbjct: 110 AKAPW 114


>tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplast
           delta-12 fatty acid desaturase) OS=Descurainia sophia
           GN=FAD6 PE=2 SV=1
          Length = 447

 Score = 97.8 bits (242), Expect = 5e-19
 Identities = 44/65 (67%), Positives = 56/65 (86%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +LAE YGF QIGE +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+Y  GLFMI
Sbjct: 84  REQLAESYGFRQIGEDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYTLGLFMI 143

Query: 638 AKAPW 652
           AKAPW
Sbjct: 144 AKAPW 148


>tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase
           OS=Olea europaea GN=FAD6 PE=2 SV=1
          Length = 443

 Score = 97.1 bits (240), Expect = 9e-19
 Identities = 42/65 (64%), Positives = 58/65 (89%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R +L+E YGF QIGEP+P NVTLK+++D+LP +VFEI+++KAW++V I+VT+YA G+FMI
Sbjct: 81  RKQLSENYGFRQIGEPLPDNVTLKDIVDTLPRKVFEIDDVKAWKSVLISVTSYALGIFMI 140

Query: 638 AKAPW 652
           AKAPW
Sbjct: 141 AKAPW 145


>tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase
           OS=Jatropha curcas PE=2 SV=1
          Length = 440

 Score = 96.3 bits (238), Expect = 1e-18
 Identities = 40/66 (60%), Positives = 57/66 (86%)
 Frame = +2

Query: 455 YRAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFM 634
           YR +LAE YGF QIGEP+P N+TL+ ++D+LP +VFEI+++KAW++V ++VT+YA GL M
Sbjct: 77  YRKQLAESYGFRQIGEPLPENITLREIIDTLPKKVFEIDDVKAWKSVLVSVTSYALGLLM 136

Query: 635 IAKAPW 652
           I+KAPW
Sbjct: 137 ISKAPW 142


>tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase,
           chloroplast OS=Oryza sativa subsp. japonica
           GN=P0528B09.19 PE=4 SV=1
          Length = 414

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 41/65 (63%), Positives = 56/65 (86%)
 Frame = +2

Query: 458 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 637
           R ++ E+YGF QIGE +P NVTLK+VMDSLP EVFEI+++K+W +V I+VT+YA G+F+I
Sbjct: 52  RKQMCEDYGFKQIGEQLPDNVTLKDVMDSLPKEVFEIDDLKSWTSVLISVTSYALGIFLI 111

Query: 638 AKAPW 652
           +KAPW
Sbjct: 112 SKAPW 116