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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956585
Clone id TST39A01NGRL0026_C01
Library
Length 507
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_C01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AATAAGGTTTGCTAGAAGAGTATGGTGCAGCCTCGCAATTATCTGCTCTTGACTTGCCAT
GCAGCTAATGAGACGGTGCAATTGTATCAGCTATCTAGATGGGCCAGAGCAAATGGCTAC
CTTGGAGATAAGACGCCTACCACAAATGAGATGCCTGCAAAAGAGACGCCGCCTGCTGCA
CAACCAGCAAAGGCGTCTCAAAGCAAAGAGTAAAGCTGAAGGCCTCAAATCAAAGAGTAA
GGCTCTACAGCATACGAAAAATAATGTTCCTCTATAATGGTGCCACATTCTTTGTTGCTG
ATGATGACGAAAACTGGGCTGCCACAACCAAAGGAGGCCGGAGTGCAAAATAATTCGATC
TCGGAATTGCAGTCTTTGGAATGTAAACAGTTCATTTTAGGATGGTAAATAAGGTTTGCT
AGAAGAGTATGGTGGTGATTGAAAGTTCGGAATTATTCTGCTTCCAAAACCNACNANAAA
AAAAAGAAGAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q3ZCG2
Definition sp|Q3ZCG2|BR44L_BOVIN Brain protein 44-like protein OS=Bos taurus
Align length 28
Score (bit) 37.4
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_C01, 5'
         (477 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3ZCG2|BR44L_BOVIN Brain protein 44-like protein OS=Bos tauru...    37   0.035
sp|O74847|YCYB_SCHPO UPF0041 protein C1235.11 OS=Schizosaccharom...    37   0.046
sp|Q9Y5U8|BR44L_HUMAN Brain protein 44-like protein OS=Homo sapi...    37   0.060
sp|Q55GU4|U041A_DICDI UPF0041 protein A OS=Dictyostelium discoid...    36   0.10 
sp|P53157|YGI0_YEAST UPF0041 protein YGL080W OS=Saccharomyces ce...    35   0.18 
sp|P63031|BR44L_RAT Brain protein 44-like protein OS=Rattus norv...    35   0.18 
sp|P63030|BR44L_MOUSE Brain protein 44-like protein OS=Mus muscu...    35   0.18 
sp|Q21828|YNFD_CAEEL UPF0041 protein R07E5.13 OS=Caenorhabditis ...    33   0.51 
sp|Q2M2T3|BR44M_BOVIN Brain protein 44-like protein 2 OS=Bos tau...    32   1.5  
sp|P44885|MGLC_HAEIN Galactoside transport system permease prote...    31   3.2  
sp|Q6JQN1|ACD10_HUMAN Acyl-CoA dehydrogenase family member 10 OS...    30   7.4  
sp|P23200|MGLC_ECOLI Galactoside transport system permease prote...    29   9.4  

>sp|Q3ZCG2|BR44L_BOVIN Brain protein 44-like protein OS=Bos taurus
           GN=BRP44L PE=1 SV=1
          Length = 109

 Score = 37.4 bits (85), Expect = 0.035
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSRWAR 108
           VQPRN+LL  CHA NE  QL Q  R  R
Sbjct: 73  VQPRNWLLFACHATNEVAQLIQGGRLIR 100


>sp|O74847|YCYB_SCHPO UPF0041 protein C1235.11
           OS=Schizosaccharomyces pombe GN=SPCC1235.11 PE=2 SV=3
          Length = 141

 Score = 37.0 bits (84), Expect = 0.046
 Identities = 17/23 (73%), Positives = 17/23 (73%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQ 90
           MV PRNYLLL CHA N TVQ  Q
Sbjct: 82  MVSPRNYLLLGCHAFNTTVQTAQ 104


>sp|Q9Y5U8|BR44L_HUMAN Brain protein 44-like protein OS=Homo sapiens
           GN=BRP44L PE=1 SV=1
          Length = 109

 Score = 36.6 bits (83), Expect = 0.060
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSR 99
           VQPRN+LL  CHA NE  QL Q  R
Sbjct: 73  VQPRNWLLFACHATNEVAQLIQGGR 97


>sp|Q55GU4|U041A_DICDI UPF0041 protein A OS=Dictyostelium discoideum
           GN=DDB_G0267508 PE=3 SV=2
          Length = 97

 Score = 35.8 bits (81), Expect = 0.10
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSRWAR 108
           + P NY LL CH ANE  QL QL R+ +
Sbjct: 57  IYPPNYWLLGCHVANEVAQLTQLGRYGK 84


>sp|P53157|YGI0_YEAST UPF0041 protein YGL080W OS=Saccharomyces
           cerevisiae GN=YGL080W PE=1 SV=1
          Length = 130

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNEMPAKE 165
           V P+NYLL  CH  NET QL Q  R+ +   +  D+     +   KE
Sbjct: 77  VSPKNYLLFGCHLINETAQLAQGYRFLKYTYFTTDEEKKALDKEWKE 123


>sp|P63031|BR44L_RAT Brain protein 44-like protein OS=Rattus
           norvegicus GN=Brp44l PE=2 SV=1
          Length = 109

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSR 99
           VQPRN+LL  CH  NE  QL Q  R
Sbjct: 73  VQPRNWLLFACHVTNEVAQLIQGGR 97


>sp|P63030|BR44L_MOUSE Brain protein 44-like protein OS=Mus musculus
           GN=Brp44l PE=1 SV=1
          Length = 109

 Score = 35.0 bits (79), Expect = 0.18
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSR 99
           VQPRN+LL  CH  NE  QL Q  R
Sbjct: 73  VQPRNWLLFACHVTNEVAQLIQGGR 97


>sp|Q21828|YNFD_CAEEL UPF0041 protein R07E5.13 OS=Caenorhabditis
           elegans GN=R07E5.13 PE=2 SV=1
          Length = 160

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSRWARAN 114
           VQPRN LL  CH AN + Q  QL R+   N
Sbjct: 75  VQPRNLLLFACHFANFSAQGAQLGRFVNHN 104


>sp|Q2M2T3|BR44M_BOVIN Brain protein 44-like protein 2 OS=Bos taurus
           PE=2 SV=1
          Length = 181

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 25  VQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTT 144
           VQPRN LL+ CH  N   Q  Q  R+   + Y G  T  T
Sbjct: 75  VQPRNLLLMACHGTNIVAQSMQAGRYLNYH-YGGGTTAAT 113


>sp|P44885|MGLC_HAEIN Galactoside transport system permease protein
           mglC OS=Haemophilus influenzae GN=mglC PE=3 SV=1
          Length = 336

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 197 DAFAGCAAGGVSFA-GISFVVGVLS 126
           DA A C  GGVSFA G+  V+GV++
Sbjct: 267 DAIAACVVGGVSFAGGVGTVIGVIT 291
tr_hit_id B6UEL2
Definition tr|B6UEL2|B6UEL2_MAIZE Brain protein 44-like protein OS=Zea mays
Align length 43
Score (bit) 73.2
E-value 6.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956585|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_C01, 5'
         (477 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6UEL2|B6UEL2_MAIZE Brain protein 44-like protein OS=Zea mays...    73   6e-12
tr|Q949R9|Q949R9_ARATH Putative uncharacterized protein At5g2009...    71   2e-11
tr|Q6H4I2|Q6H4I2_ORYSJ Os09g0373000 protein OS=Oryza sativa subs...    70   4e-11
tr|B8BEY3|B8BEY3_ORYSI Putative uncharacterized protein OS=Oryza...    70   4e-11
tr|B6T252|B6T252_MAIZE Brain protein 44-like protein OS=Zea mays...    70   4e-11
tr|A3BY81|A3BY81_ORYSJ Putative uncharacterized protein OS=Oryza...    70   4e-11
tr|Q6Z565|Q6Z565_ORYSJ Os08g0412500 protein OS=Oryza sativa subs...    70   5e-11
tr|Q5XLE2|Q5XLE2_MAIZE Brain protein 44-like OS=Zea mays PE=4 SV=1     70   5e-11
tr|B6SX80|B6SX80_MAIZE Brain protein 44-like protein OS=Zea mays...    70   5e-11
tr|B6TQE5|B6TQE5_MAIZE Brain protein 44-like protein OS=Zea mays...    69   2e-10
tr|A5AH05|A5AH05_VITVI Putative uncharacterized protein OS=Vitis...    69   2e-10
tr|A9NZ92|A9NZ92_PICSI Putative uncharacterized protein OS=Picea...    67   4e-10
tr|B3H6E6|B3H6E6_ARATH Uncharacterized protein At5g20090.3 OS=Ar...    65   2e-09
tr|A9NKM9|A9NKM9_PICSI Putative uncharacterized protein OS=Picea...    62   1e-08
tr|A7PHD8|A7PHD8_VITVI Chromosome chr17 scaffold_16, whole genom...    62   1e-08
tr|A8I311|A8I311_CHLRE Predicted protein OS=Chlamydomonas reinha...    56   1e-06
tr|B6SZP9|B6SZP9_MAIZE Brain protein 44-like protein OS=Zea mays...    55   1e-06
tr|B6TZA8|B6TZA8_MAIZE Brain protein 44-like protein OS=Zea mays...    52   1e-05
tr|A4RQF6|A4RQF6_OSTLU Predicted protein OS=Ostreococcus lucimar...    50   6e-05
tr|A9RVL7|A9RVL7_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|Q01H45|Q01H45_OSTTA Brain protein 44-like (ISS) OS=Ostreococc...    45   0.001
tr|B6KMA0|B6KMA0_TOXGO Apoptosis-regulating basic protein, putat...    44   0.004
tr|B8P8P4|B8P8P4_9APHY Predicted protein OS=Postia placenta Mad-...    42   0.015
tr|Q7SHV4|Q7SHV4_NEUCR Predicted protein OS=Neurospora crassa GN...    42   0.020
tr|Q754Z9|Q754Z9_ASHGO AFL074Cp OS=Ashbya gossypii GN=AFL074C PE...    41   0.034
tr|B5XD37|B5XD37_SALSA Brain protein 44-like protein OS=Salmo sa...    40   0.075
tr|Q4S0Z2|Q4S0Z2_TETNG Chromosome 5 SCAF14773, whole genome shot...    39   0.098
tr|B5XFM9|B5XFM9_SALSA Brain protein 44-like protein OS=Salmo sa...    39   0.098
tr|B5XAF2|B5XAF2_SALSA Brain protein 44-like protein OS=Salmo sa...    39   0.098
tr|B5X6Z2|B5X6Z2_SALSA Brain protein 44-like protein OS=Salmo sa...    39   0.098

>tr|B6UEL2|B6UEL2_MAIZE Brain protein 44-like protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQLSRWARA GYL  K P T +
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQLSRWARAQGYLEKKEPETQQ 107


>tr|Q949R9|Q949R9_ARATH Putative uncharacterized protein At5g20090
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At5g20090 PE=2 SV=1
          Length = 110

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 32/37 (86%), Positives = 33/37 (89%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDK 132
           MVQPRNYLLL CHA+NETVQLYQLSRWARA GYL  K
Sbjct: 66  MVQPRNYLLLACHASNETVQLYQLSRWARAQGYLSSK 102


>tr|Q6H4I2|Q6H4I2_ORYSJ Os09g0373000 protein OS=Oryza sativa subsp.
           japonica GN=P0599F09.17 PE=4 SV=1
          Length = 107

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQ+SRWARA GYL  K P   +
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQMSRWARAQGYLEKKEPEAQQ 107


>tr|B8BEY3|B8BEY3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31133 PE=4 SV=1
          Length = 107

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQ+SRWARA GYL  K P   +
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQMSRWARAQGYLEKKEPEAQQ 107


>tr|B6T252|B6T252_MAIZE Brain protein 44-like protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQLSRWAR+ GYL  K P   +
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQLSRWARSQGYLDKKEPEAKQ 107


>tr|A3BY81|A3BY81_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028003 PE=4 SV=1
          Length = 101

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQ+SRWARA GYL  K P   +
Sbjct: 59  MVQPRNYLLLACHASNESVQLYQMSRWARAQGYLEKKEPEAQQ 101


>tr|Q6Z565|Q6Z565_ORYSJ Os08g0412500 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0007M04.17 PE=4 SV=1
          Length = 107

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 31/39 (79%), Positives = 34/39 (87%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTP 138
           MVQPRNYLLL CHA+NE+VQLYQ SRWARA GYL +K P
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQFSRWARAQGYLENKEP 103


>tr|Q5XLE2|Q5XLE2_MAIZE Brain protein 44-like OS=Zea mays PE=4 SV=1
          Length = 107

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQLSRWAR+ GYL  K P   +
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQLSRWARSQGYLEKKEPEAKQ 107


>tr|B6SX80|B6SX80_MAIZE Brain protein 44-like protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQLSRWAR+ GYL  K P   +
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQLSRWARSQGYLEKKEPEAKQ 107


>tr|B6TQE5|B6TQE5_MAIZE Brain protein 44-like protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 30/43 (69%), Positives = 34/43 (79%)
 Frame = +1

Query: 22  MVQPRNYLLLTCHAANETVQLYQLSRWARANGYLGDKTPTTNE 150
           MVQPRNYLLL CHA+NE+VQLYQLSRW R+ GYL  K P   +
Sbjct: 65  MVQPRNYLLLACHASNESVQLYQLSRWVRSQGYLEKKEPEAKQ 107