DK956592 |
Clone id |
TST39A01NGRL0026_C08 |
Library |
TST39 |
Length |
587 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_C08. 5' end sequence. |
Accession |
DK956592 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL101Contig1 |
Sequence |
CGTCGTTATGGCATTTGCAAAGGCGAAGAAGACAAAGGCCTATTTCAAGCGCTATCAAGT GAAGTACAAGAGAAGACGGGCTGGCAAGACTGATCACCGATTTAGGGCCAGGCTTACCAA CCAGGACAAAAATAAGTACAACACCCCAAAGTATCGCCTTGTTGTGCGATTTACCAACAA GGACATCACTGCCCAGATAACGTATGCCACTCTAGCTGGTGATGTTGTTCTTGCAGCGGC CTACTCTCATGAGCTACCTCAATATGGGCTTAAAACAGGGCTGACAAATTATGCGGCAGC ATACTGCACTGGATTGCTACTTGCTCGGAGAGTTTTGAAGCAGTTTGATCTAGACCAGGA ATATGTTGGCAATGAGGAGGCTACAGGGGAGGACTATAACGTTGAGGAGGCTGGTGAACG CCGACCTTTCAGGGCCCTCCTTGATGTTGGCCTTGTGAGAACCACCACGGGGAACCGGGT TTTTGGAGCCTTGAAGGGTGCTTTAGATGGGGGTCTGGATGTTCCACATAGTGACAAGAG GTTTGCAGGGGTATAGTAAAGAAGAGAAGTCATTGAATGCAGATGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0JGY1 |
Definition |
sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica |
Align length |
167 |
Score (bit) |
264.0 |
E-value |
3.0e-70 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SNA3 |
Definition |
tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
167 |
Score (bit) |
271.0 |
E-value |
3.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956592|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_C08, 5' (587 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella paten... 271 3e-72 tr|A9S013|A9S013_PHYPA Predicted protein OS=Physcomitrella paten... 268 2e-71 tr|A9TYC5|A9TYC5_PHYPA Predicted protein OS=Physcomitrella paten... 268 5e-71 tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella paten... 268 5e-71 tr|B8A7P9|B8A7P9_ORYSI Putative uncharacterized protein OS=Oryza... 264 3e-69 tr|B7EWY9|B7EWY9_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ... 264 3e-69 tr|B8A7P8|B8A7P8_ORYSI Putative uncharacterized protein OS=Oryza... 262 1e-68 tr|B7SDE4|B7SDE4_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ... 262 1e-68 tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea... 261 1e-68 tr|A9PB43|A9PB43_POPTR Putative uncharacterized protein OS=Popul... 257 3e-67 tr|B7FJX5|B7FJX5_MEDTR Putative uncharacterized protein OS=Medic... 256 9e-67 tr|A7R4R2|A7R4R2_VITVI Chromosome undetermined scaffold_763, who... 255 1e-66 tr|A7QAV5|A7QAV5_VITVI Chromosome chr5 scaffold_72, whole genome... 255 1e-66 tr|B6THG9|B6THG9_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE... 254 3e-66 tr|A9PFA8|A9PFA8_POPTR Putative uncharacterized protein OS=Popul... 254 3e-66 tr|B6TYP7|B6TYP7_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE... 253 4e-66 tr|A3A0I1|A3A0I1_ORYSJ Putative uncharacterized protein OS=Oryza... 253 7e-66 tr|Q0JGY2|Q0JGY2_ORYSJ Os01g0896700 protein (Putative uncharacte... 251 3e-65 tr|A9PH69|A9PH69_POPTR Putative uncharacterized protein OS=Popul... 247 3e-64 tr|A9PBZ9|A9PBZ9_POPTR Putative uncharacterized protein OS=Popul... 247 3e-64 tr|Q38HU5|Q38HU5_SOLTU Putative uncharacterized protein OS=Solan... 239 6e-62 tr|A8WNL0|A8WNL0_CAEBR CBR-RPL-5 protein OS=Caenorhabditis brigg... 228 2e-58 tr|A8PSW9|A8PSW9_BRUMA 60S ribosomal protein L5, putative OS=Bru... 219 7e-56 tr|B2YHY0|B2YHY0_9BILA Putative 60S ribosomal protein RPL5 (Frag... 217 4e-55 tr|Q86LY6|Q86LY6_BRALA Ribosomal protein L5 (Fragment) OS=Branch... 216 6e-55 tr|B6LCB3|B6LCB3_BRAFL Putative uncharacterized protein OS=Branc... 215 1e-54 tr|A9UDR2|A9UDR2_9BILA Putative 60S ribosomal protein RP5L (Frag... 215 1e-54 tr|B6RB96|B6RB96_HALDI Ribosomal protein l5 (Fragment) OS=Haliot... 213 5e-54 tr|B7PFS8|B7PFS8_IXOSC 60S ribosomal protein L5, putative OS=Ixo... 213 8e-54 tr|A7S1I9|A7S1I9_NEMVE Predicted protein OS=Nematostella vectens... 212 1e-53
>tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_214065 PE=4 SV=1 Length = 293
Score = 271 bits (692), Expect(2) = 3e-72 Identities = 134/167 (80%), Positives = 144/167 (86%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVKYKRRRAGKTD+R R RLT QDKNKYNTPKYRLVVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRLVVRFTNKDIVAQITYATLAGDIV 74
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE+ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNEQATGEDYNVEE 134
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAG 181
Score = 25.4 bits (54), Expect(2) = 3e-72 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +3
Query: 549 GYSKEEKSLNAD 584 GYSKE+KSLNA+ Sbjct: 181 GYSKEDKSLNAE 192
>tr|A9S013|A9S013_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_207358 PE=4 SV=1 Length = 293
Score = 268 bits (684), Expect(2) = 2e-71 Identities = 133/167 (79%), Positives = 142/167 (85%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVKYKRRRAGKTD+R R RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRYVVRFTNKDIVAQITYATLAGDIV 74
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNETATGEDYNVEE 134
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAG 181
Score = 25.4 bits (54), Expect(2) = 2e-71 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = +3
Query: 549 GYSKEEKSLNAD 584 GYSKE+KSLNA+ Sbjct: 181 GYSKEDKSLNAE 192
>tr|A9TYC5|A9TYC5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226607 PE=4 SV=1 Length = 293
Score = 268 bits (685), Expect(2) = 5e-71 Identities = 133/167 (79%), Positives = 142/167 (85%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVKYKRRRAGKTD+R R RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRFVVRFTNKDIVAQITYATLAGDIV 74
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNETATGEDYNVEE 134
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAG 181
Score = 23.9 bits (50), Expect(2) = 5e-71 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +3
Query: 549 GYSKEEKSLNAD 584 G+SKE+KSLNA+ Sbjct: 181 GFSKEDKSLNAE 192
>tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199314 PE=4 SV=1 Length = 293
Score = 268 bits (684), Expect(2) = 5e-71 Identities = 132/167 (79%), Positives = 142/167 (85%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVKYKRRRAGKTD+R R RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRFVVRFTNKDIVAQITYATLAGDIV 74
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK +DLD EYVGNE+ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNYDLDDEYVGNEQATGEDYNVEE 134
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAG 181
Score = 24.3 bits (51), Expect(2) = 5e-71 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = +3
Query: 549 GYSKEEKSLNAD 584 GY+KE+KSLNA+ Sbjct: 181 GYNKEDKSLNAE 192
>tr|B8A7P9|B8A7P9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04779 PE=4 SV=1 Length = 304
Score = 264 bits (674), Expect = 3e-69 Identities = 131/167 (78%), Positives = 141/167 (84%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVK+KRRR GKTD+R R RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVLK LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 135
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
>tr|B7EWY9|B7EWY9_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 304
Score = 264 bits (674), Expect = 3e-69 Identities = 131/167 (78%), Positives = 141/167 (84%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVK+KRRR GKTD+R R RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVLK LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 135
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
>tr|B8A7P8|B8A7P8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04778 PE=4 SV=1 Length = 304
Score = 262 bits (669), Expect = 1e-68 Identities = 130/167 (77%), Positives = 140/167 (83%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVK+KRRR GKTD+R R RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVL LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 135
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
>tr|B7SDE4|B7SDE4_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 304
Score = 262 bits (669), Expect = 1e-68 Identities = 130/167 (77%), Positives = 140/167 (83%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVK+KRRR GKTD+R R RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVL LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 135
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
>tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 297
Score = 261 bits (666), Expect(2) = 1e-68 Identities = 128/167 (76%), Positives = 142/167 (85%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVK+KRRR GKTD+R R RL NQDKNKYNTPKYRLVVRF+NKD+ AQI YATLAGDVV Sbjct: 15 RFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRLVVRFSNKDVVAQIIYATLAGDVV 74
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 +AAAYS ELP+YGL+ GLTNYAAAYCTGLLLARRVLKQ ++D+EYVGNEEA+GEDY+VE Sbjct: 75 MAAAYSRELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDEEYVGNEEASGEDYSVEP 134
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 RRPFRALLDVGLVRTTTGNRVF +PHSDKRFAG Sbjct: 135 NDARRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181
Score = 23.1 bits (48), Expect(2) = 1e-68 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = +3
Query: 549 GYSKEEKSLNAD 584 GY+KE KSL+AD Sbjct: 181 GYNKESKSLDAD 192
>tr|A9PB43|A9PB43_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 298
Score = 257 bits (657), Expect = 3e-67 Identities = 125/167 (74%), Positives = 141/167 (84%) Frame = +2
Query: 50 RYQVKYKRRRAGKTDHRFRARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 229 R+QVK+KRRR GKTD+R R RL NQDKNKYNTPKYR V+RFTNKDITAQI +A++AGD+V Sbjct: 15 RFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVMRFTNKDITAQIIHASMAGDIV 74
Query: 230 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 409 +AAAYSHELP YGL+ GLTNYAAAYCTGLLLARRVLK+ ++D+EY GN EATGEDY+VE Sbjct: 75 VAAAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEP 134
Query: 410 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAG 550 A RRPFRALLDVGLVRTTTGNRVF +PHSDKRFAG Sbjct: 135 ADSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 181
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