DK956618 |
Clone id |
TST39A01NGRL0026_D10 |
Library |
TST39 |
Length |
548 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_D10. 5' end sequence. |
Accession |
DK956618 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL7Contig2 |
Sequence |
GGCAACTTCGGCACAGTTGAATTGAAAGTGGCTATGAGTTGCCAAGGTTGTGTTGGTGCA GTGAAGAGGGTGCTTGGGAAGATGGAAGGGGTAAATACATATGATATAGACTGGGATCGC GCAGAAAGCGACTGTGAAAGGGAACGTCAAGCCAGAGGATGTTCTTTCTACTGTTTCCAA AACTGGGAAAGCTACATCGTTTTGGCCAAGTGAAGGAAGTACAGCATCATAGTTTTATTT GTAAATTGATTTTTGGCTATTGTGACAAGAGCTATGCTCATGAAGTGGCTGATGATTAAA AAAAACTCTTGCATACTATACGACATATTTATGTCATGATCTTATTCCATCTTGCCAACT TGTGCGCCGTGGTATGATTAATGATATCACTATCCTATATGACATTAGTGTGGCTTTGTA CATTTCAATCCTTTTGCCCATCAAGTTGTGGTACTGCATCTTGTATAGTTCTTTGACTCA TTCTACCCGCTATCCCCTCAAATCAGTGAAGAATTGGATTGTTTGATAGGCAAAAAAAAA AAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54PZ2 |
Definition |
sp|Q54PZ2|ATOX1_DICDI Copper transport protein ATOX1 homolog OS=Dictyostelium discoideum |
Align length |
45 |
Score (bit) |
36.2 |
E-value |
0.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5ZF67 |
Definition |
tr|Q5ZF67|Q5ZF67_PLAMJ Copper chaperone OS=Plantago major |
Align length |
36 |
Score (bit) |
63.5 |
E-value |
8.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956618|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_D10, 5' (531 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5ZF67|Q5ZF67_PLAMJ Copper chaperone OS=Plantago major GN=cch... 64 8e-18 tr|A7QBE3|A7QBE3_VITVI Chromosome chr13 scaffold_74, whole genom... 61 1e-17 tr|A9NJS2|A9NJS2_PICSI Putative uncharacterized protein OS=Picea... 58 1e-17 tr|Q94BT9|Q94BT9_ARATH At1g66240/T6J19_6 OS=Arabidopsis thaliana... 58 2e-17 tr|B6SPL7|B6SPL7_MAIZE Copper chaperone OS=Zea mays PE=4 SV=1 60 3e-17 tr|Q6J338|Q6J338_9ROSI Copper chaperone OS=Populus alba x Populu... 61 9e-17 tr|A9PIL5|A9PIL5_POPJC Putative uncharacterized protein OS=Popul... 61 9e-17 tr|A9PCL8|A9PCL8_POPTR Putative uncharacterized protein OS=Popul... 61 9e-17 tr|Q5QL92|Q5QL92_ORYSJ cDNA clone:001-016-H06, full insert seque... 57 1e-16 tr|Q9SE04|Q9SE04_ORYSA Copper chaperone homolog CCH OS=Oryza sat... 57 1e-16 tr|Q6H759|Q6H759_ORYSJ Os02g0530100 protein OS=Oryza sativa subs... 57 1e-16 tr|A2X5L0|A2X5L0_ORYSI Putative uncharacterized protein OS=Oryza... 57 1e-16 tr|Q70DK1|Q70DK1_HORVD Chopper chaperone OS=Hordeum vulgare var.... 55 1e-16 tr|Q84KJ2|Q84KJ2_SOLLC Copper chaperone OS=Solanum lycopersicum ... 61 2e-16 tr|B2CM19|B2CM19_SOLCH Copper chaperone OS=Solanum chacoense PE=... 61 2e-16 tr|O82089|O82089_ARATH Copper homeostasis factor (AT3g56240/F18O... 59 2e-16 tr|B6T1K0|B6T1K0_MAIZE Copper chaperone OS=Zea mays PE=4 SV=1 58 2e-16 tr|B6ST82|B6ST82_MAIZE Putative uncharacterized protein OS=Zea m... 57 2e-16 tr|B6SQL3|B6SQL3_MAIZE Putative uncharacterized protein OS=Zea m... 57 2e-16 tr|B6SHX8|B6SHX8_MAIZE Putative uncharacterized protein OS=Zea m... 57 2e-16 tr|A9P875|A9P875_POPTR Putative uncharacterized protein OS=Popul... 59 2e-16 tr|A1ECK4|A1ECK4_9ROSI Putative copper chaperone OS=Citrus hybri... 60 7e-16 tr|Q6ZCF3|Q6ZCF3_ORYSJ Os08g0205400 protein OS=Oryza sativa subs... 57 1e-15 tr|A2YSB2|A2YSB2_ORYSI Putative uncharacterized protein OS=Oryza... 57 1e-15 tr|A9SR07|A9SR07_PHYPA Predicted protein OS=Physcomitrella paten... 59 3e-15 tr|Q9C7U6|Q9C7U6_ARATH Copper homeostasis factor, putative; 2714... 54 6e-15 tr|Q9SE03|Q9SE03_SOYBN Copper chaperone homolog CCH OS=Glycine m... 56 2e-14 tr|B7FJ81|B7FJ81_MEDTR Putative uncharacterized protein OS=Medic... 51 5e-14 tr|B2MUN5|B2MUN5_9CARY Copper chaperone protein OS=Knorringia si... 55 2e-13 tr|B5M1W7|B5M1W7_RHEAU Copper homeostasis factor OS=Rheum austra... 55 3e-13
>tr|Q5ZF67|Q5ZF67_PLAMJ Copper chaperone OS=Plantago major GN=cch1 PE=4 SV=1 Length = 109
Score = 63.5 bits (153), Expect(2) = 8e-18 Identities = 29/36 (80%), Positives = 33/36 (91%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDIDWDR 120 TVELKV MSCQGCVGAVKRVLGKMEGV ++DID ++ Sbjct: 4 TVELKVGMSCQGCVGAVKRVLGKMEGVESFDIDIEK 39
Score = 50.4 bits (119), Expect(2) = 8e-18 Identities = 23/33 (69%), Positives = 25/33 (75%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSEGS 220 QK TVKGNV+ E VL TVSKTGK T FWP E + Sbjct: 40 QKVTVKGNVEKEAVLQTVSKTGKKTEFWPEEAA 72
>tr|A7QBE3|A7QBE3_VITVI Chromosome chr13 scaffold_74, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034927001 PE=4 SV=1 Length = 134
Score = 61.2 bits (147), Expect(2) = 1e-17 Identities = 28/35 (80%), Positives = 31/35 (88%) Frame = +1
Query: 7 FGTVELKVAMSCQGCVGAVKRVLGKMEGVNTYDID 111 F TV LKV MSC+GCVGAVKRVLGKMEGV ++DID Sbjct: 50 FDTVVLKVGMSCEGCVGAVKRVLGKMEGVESFDID 84
Score = 52.4 bits (124), Expect(2) = 1e-17 Identities = 24/33 (72%), Positives = 27/33 (81%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSEGS 220 QK TVKGNV+P+ VL TVSKTGK TSFW +E S Sbjct: 88 QKVTVKGNVQPDAVLKTVSKTGKKTSFWEAEAS 120
>tr|A9NJS2|A9NJS2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 75
Score = 57.8 bits (138), Expect(2) = 1e-17 Identities = 26/33 (78%), Positives = 29/33 (87%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDID 111 TV LKV MSC+GCVGAVKRVL KMEGV TYD++ Sbjct: 4 TVVLKVGMSCEGCVGAVKRVLNKMEGVETYDVN 36
Score = 55.5 bits (132), Expect(2) = 1e-17 Identities = 26/35 (74%), Positives = 27/35 (77%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSEGSTA 226 QK TVKGNVKP+ VL TVSKTGK TSFWP E A Sbjct: 40 QKVTVKGNVKPDAVLQTVSKTGKETSFWPEEKDIA 74
>tr|Q94BT9|Q94BT9_ARATH At1g66240/T6J19_6 OS=Arabidopsis thaliana GN=At1g66240 PE=4 SV=1 Length = 106
Score = 58.2 bits (139), Expect(2) = 2e-17 Identities = 25/33 (75%), Positives = 31/33 (93%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDID 111 TV L+VAM+C+GCVGAVKRVLGKMEGV ++D+D Sbjct: 34 TVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVD 66
Score = 54.3 bits (129), Expect(2) = 2e-17 Identities = 24/35 (68%), Positives = 29/35 (82%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSEGSTA 226 QK TVKGNV+P+ VL TV+KTGK T+FW +EG TA Sbjct: 70 QKVTVKGNVQPDAVLQTVTKTGKKTAFWEAEGETA 104
>tr|B6SPL7|B6SPL7_MAIZE Copper chaperone OS=Zea mays PE=4 SV=1 Length = 84
Score = 60.5 bits (145), Expect(2) = 3e-17 Identities = 27/33 (81%), Positives = 30/33 (90%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDID 111 TV LKV MSC+GCVGAVKRVLGKMEGV +YD+D Sbjct: 4 TVVLKVGMSCEGCVGAVKRVLGKMEGVESYDVD 36
Score = 51.6 bits (122), Expect(2) = 3e-17 Identities = 24/35 (68%), Positives = 27/35 (77%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSEGSTA 226 QK TVKGNV P+ VL TVSKTGK TSFW +E T+ Sbjct: 40 QKVTVKGNVTPDAVLQTVSKTGKKTSFWEAEAVTS 74
>tr|Q6J338|Q6J338_9ROSI Copper chaperone OS=Populus alba x Populus tremula var. glandulosa GN=CCH PE=4 SV=1 Length = 85
Score = 60.8 bits (146), Expect(2) = 9e-17 Identities = 28/33 (84%), Positives = 30/33 (90%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDID 111 TV LKV MSC+GCVGAVKRVLGKMEGV +YDID Sbjct: 4 TVVLKVGMSCEGCVGAVKRVLGKMEGVESYDID 36
Score = 49.7 bits (117), Expect(2) = 9e-17 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSE 214 QK TVKGNV+P+ VL TVSKTGK T+FW +E Sbjct: 40 QKVTVKGNVQPDAVLQTVSKTGKKTAFWEAE 70
>tr|A9PIL5|A9PIL5_POPJC Putative uncharacterized protein OS=Populus jackii PE=4 SV=1 Length = 85
Score = 60.8 bits (146), Expect(2) = 9e-17 Identities = 28/33 (84%), Positives = 30/33 (90%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDID 111 TV LKV MSC+GCVGAVKRVLGKMEGV +YDID Sbjct: 4 TVVLKVGMSCEGCVGAVKRVLGKMEGVESYDID 36
Score = 49.7 bits (117), Expect(2) = 9e-17 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSE 214 QK TVKGNV+P+ VL TVSKTGK T+FW +E Sbjct: 40 QKVTVKGNVQPDAVLQTVSKTGKKTAFWEAE 70
>tr|A9PCL8|A9PCL8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 85
Score = 60.8 bits (146), Expect(2) = 9e-17 Identities = 28/33 (84%), Positives = 30/33 (90%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDID 111 TV LKV MSC+GCVGAVKRVLGKMEGV +YDID Sbjct: 4 TVVLKVGMSCEGCVGAVKRVLGKMEGVESYDID 36
Score = 49.7 bits (117), Expect(2) = 9e-17 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFWPSE 214 QK TVKGNV+P+ VL TVSKTGK T+FW +E Sbjct: 40 QKVTVKGNVQPDAVLQTVSKTGKKTAFWEAE 70
>tr|Q5QL92|Q5QL92_ORYSJ cDNA clone:001-016-H06, full insert sequence OS=Oryza sativa subsp. japonica GN=P0476H10.30-2 PE=2 SV=1 Length = 252
Score = 57.0 bits (136), Expect(2) = 1e-16 Identities = 26/36 (72%), Positives = 30/36 (83%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDIDWDR 120 TV LKV MSCQGC GAV+RVL KMEGV T+DID ++ Sbjct: 125 TVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQ 160
Score = 53.1 bits (126), Expect(2) = 1e-16 Identities = 24/28 (85%), Positives = 24/28 (85%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFW 205 QK TVKGNVKPEDV TVSKTGK TSFW Sbjct: 161 QKVTVKGNVKPEDVFQTVSKTGKKTSFW 188
>tr|Q9SE04|Q9SE04_ORYSA Copper chaperone homolog CCH OS=Oryza sativa PE=2 SV=1 Length = 132
Score = 57.0 bits (136), Expect(2) = 1e-16 Identities = 26/36 (72%), Positives = 30/36 (83%) Frame = +1
Query: 13 TVELKVAMSCQGCVGAVKRVLGKMEGVNTYDIDWDR 120 TV LKV MSCQGC GAV+RVL KMEGV T+DID ++ Sbjct: 5 TVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQ 40
Score = 53.1 bits (126), Expect(2) = 1e-16 Identities = 24/28 (85%), Positives = 24/28 (85%) Frame = +2
Query: 122 QKATVKGNVKPEDVLSTVSKTGKATSFW 205 QK TVKGNVKPEDV TVSKTGK TSFW Sbjct: 41 QKVTVKGNVKPEDVFQTVSKTGKKTSFW 68
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