| DK956619 |
| Clone id |
TST39A01NGRL0026_D11 |
| Library |
TST39 |
| Length |
558 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_D11. 5' end sequence. |
| Accession |
DK956619 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL4261Contig1 |
| Sequence |
CTCTGAGGAAAGCCCAAACCAAGCTCAAGCGAGGGTTGATCCTGCACTTTCTGCTAGGAT TTACAGTGATCTACAGAAGCTTCGTCTGGATTTAGTCAATGAAGCTGGTGGTAATCTTAT GCCATACCATATCATGGGGAACTCTGAGCTTCAGCAAATAAGTAAGAAGCTTCCAAAGTC CACTGAAGAGCTGCTGGAGGTGAATGGTATTGGAAAGGTGAAAAGCAACAAGTATGGTGC TCGTATTCTTGATGTGGTTGCAAAGGCTGTTGAGCGACATCAGAGCTTGCCAAAAGGCTT CAAAGAGAATGTTGTGCCATTTTCAAAACACCCAGCAGAAGAGGATATCCCTAAAACTGA AAGAGGAATCAAGGCTGGATCAAGCAAGAAGGGGGCTTCTGGACAGGATCTTAAAGATGG CAGGAAAACGGAAACAAAGAANAAATCATAGCATGAAACCGCGTCTACCGTAACATGGGC TTCTCAAGGTCCACCAAAATCCACTGTGGAAATGAGGGATCACGAGGGGTTTTCTCATAT ACCAGAAGGATTTCATCC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P40724 |
| Definition |
sp|P40724|RECQ_SALTY ATP-dependent DNA helicase recQ OS=Salmonella typhimurium |
| Align length |
73 |
| Score (bit) |
45.4 |
| E-value |
0.0002 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A7QCL7 |
| Definition |
tr|A7QCL7|A7QCL7_VITVI Chromosome chr12 scaffold_78, whole genome shotgun sequence OS=Vitis vinifera |
| Align length |
143 |
| Score (bit) |
95.5 |
| E-value |
2.0e-18 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956619|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_D11, 5' (558 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QCL7|A7QCL7_VITVI Chromosome chr12 scaffold_78, whole genom... 96 2e-18 tr|Q9FT71|Q9FT71_ARATH DNA Helicase OS=Arabidopsis thaliana GN=r... 84 5e-15 tr|Q8L840|Q8L840_ARATH DNA helicase isolog (At1g10930) OS=Arabid... 84 5e-15 tr|Q9FT70|Q9FT70_ARATH DNA Helicase OS=Arabidopsis thaliana GN=r... 83 9e-15 tr|Q9C959|Q9C959_ARATH Putative DNA helicase; 33057-26178 OS=Ara... 81 3e-14 tr|Q7XQB6|Q7XQB6_ORYSJ OSJNBa0088K19.8 protein OS=Oryza sativa s... 75 2e-12 tr|Q0JD35|Q0JD35_ORYSJ Os04g0433800 protein OS=Oryza sativa subs... 75 2e-12 tr|A3AU17|A3AU17_ORYSJ Putative uncharacterized protein OS=Oryza... 75 2e-12 tr|B8AU06|B8AU06_ORYSI Putative uncharacterized protein OS=Oryza... 75 2e-12 tr|B8AU00|B8AU00_ORYSI Putative uncharacterized protein OS=Oryza... 72 3e-11 tr|B6SHH5|B6SHH5_MAIZE Putative uncharacterized protein OS=Zea m... 67 5e-10 tr|Q831P2|Q831P2_ENTFA ATP-dependent DNA helicase RecQ OS=Entero... 59 2e-07 tr|A6LUG5|A6LUG5_CLOB8 ATP-dependent DNA helicase RecQ OS=Clostr... 57 5e-07 tr|A9KN33|A9KN33_CLOPH ATP-dependent DNA helicase RecQ OS=Clostr... 57 9e-07 tr|A5MZU5|A5MZU5_CLOK5 RecQ OS=Clostridium kluyveri (strain ATCC... 56 1e-06 tr|A6QCJ7|A6QCJ7_SULNB ATP-dependent DNA helicase RecQ OS=Sulfur... 53 1e-05 tr|Q186Q8|Q186Q8_CLOD6 ATP-dependent DNA helicase OS=Clostridium... 52 2e-05 tr|B1BB21|B1BB21_CLOBO ATP-dependent DNA helicase RecQ OS=Clostr... 52 3e-05 tr|Q3B2B0|Q3B2B0_PELLD ATP-requiring DNA helicase RecQ OS=Pelodi... 51 4e-05 tr|A2RMM8|A2RMM8_LACLM ATP-dependent DNA helicase RecQ OS=Lactoc... 51 4e-05 tr|B6NHG3|B6NHG3_BRAFL Putative uncharacterized protein (Fragmen... 51 4e-05 tr|Q9CEM9|Q9CEM9_LACLA ATP-dependent DNA helicase RecQ OS=Lactoc... 51 5e-05 tr|Q7CKX9|Q7CKX9_YERPE ATP-dependent DNA helicase OS=Yersinia pe... 51 5e-05 tr|Q66FY3|Q66FY3_YERPS ATP-dependent DNA helicase OS=Yersinia ps... 51 5e-05 tr|Q1CNG6|Q1CNG6_YERPN ATP-dependent DNA helicase RecQ OS=Yersin... 51 5e-05 tr|Q1CBL4|Q1CBL4_YERPA ATP-dependent DNA helicase RecQ OS=Yersin... 51 5e-05 tr|B2K086|B2K086_YERPB ATP-dependent DNA helicase RecQ OS=Yersin... 51 5e-05 tr|B1JPC8|B1JPC8_YERPY ATP-dependent DNA helicase RecQ OS=Yersin... 51 5e-05 tr|A9R8W9|A9R8W9_YERPG ATP-dependent DNA helicase RecQ OS=Yersin... 51 5e-05 tr|A7FD87|A7FD87_YERP3 ATP-dependent DNA helicase RecQ OS=Yersin... 51 5e-05
>tr|A7QCL7|A7QCL7_VITVI Chromosome chr12 scaffold_78, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035461001 PE=4 SV=1 Length = 439
Score = 95.5 bits (236), Expect = 2e-18 Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 13/143 (9%) Frame = +2
Query: 35 VDPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIG 214 VD LSA++YS L+ LR LV EAG +M YHI GN+ LQQISK++P++ EELLEVNGIG Sbjct: 232 VDLNLSAKLYSALRILRTVLVKEAGEGVMAYHIFGNATLQQISKRIPRTKEELLEVNGIG 291
Query: 215 KVKSNKYGARILDVVAKAVERHQSLPKGF-------------KENVVPFSKHPAEEDIPK 355 K K +KYG R+L+ + ++ + K +E+ +P ++D K Sbjct: 292 KAKISKYGDRVLETIESTIKEYYKTDKNSSSSNDSTDTIKRRRESAKVLDANPEDDDFTK 351
Query: 356 TERGIKAGSSKKGASGQDLKDGR 424 + + + K+ G + + R Sbjct: 352 STDRSRGRAMKRHNKGGEANNTR 374
>tr|Q9FT71|Q9FT71_ARATH DNA Helicase OS=Arabidopsis thaliana GN=recQl4A PE=2 SV=1 Length = 1182
Score = 84.0 bits (206), Expect = 5e-15 Identities = 42/93 (45%), Positives = 63/93 (67%) Frame = +2
Query: 38 DPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGK 217 D LSA +Y+ L+KLR LV EA +M YHI NS LQQIS+++P++ EELLE+NG+GK Sbjct: 1011 DVNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGK 1070
Query: 218 VKSNKYGARILDVVAKAVERHQSLPKGFKENVV 316 K +KYG ++L+ + V + K K++++ Sbjct: 1071 AKVSKYGDQLLETIETTVNEYYGTNK--KDSII 1101
>tr|Q8L840|Q8L840_ARATH DNA helicase isolog (At1g10930) OS=Arabidopsis thaliana GN=At1g10930 PE=2 SV=1 Length = 1188
Score = 84.0 bits (206), Expect = 5e-15 Identities = 42/93 (45%), Positives = 63/93 (67%) Frame = +2
Query: 38 DPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGK 217 D LSA +Y+ L+KLR LV EA +M YHI NS LQQIS+++P++ EELLE+NG+GK Sbjct: 1017 DVNLSANMYTALRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGK 1076
Query: 218 VKSNKYGARILDVVAKAVERHQSLPKGFKENVV 316 K +KYG ++L+ + V + K K++++ Sbjct: 1077 AKVSKYGDQLLETIETTVNEYYGTNK--KDSII 1107
>tr|Q9FT70|Q9FT70_ARATH DNA Helicase OS=Arabidopsis thaliana GN=recQl4B PE=2 SV=1 Length = 1150
Score = 83.2 bits (204), Expect = 9e-15 Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 5/118 (4%) Frame = +2
Query: 14 PNQAQARVDPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEEL 193 P A D LS + + L+ LR D+V E+ +M YHI GN+ L++ISK+LP++ EEL Sbjct: 1020 PMAKAAPQDSNLSGILLTALKNLRTDIVKESPDLVMAYHIFGNATLKEISKRLPRTKEEL 1079
Query: 194 LEVNGIGKVKSNKYGARILDVVAKAVERHQSLPKGF-----KENVVPFSKHPAEEDIP 352 L++NG+GK K +KYG R+L+ + + H G ENV P + AE+D P Sbjct: 1080 LDINGLGKAKVSKYGDRLLETIDSTINDHYKTRPGSGKRRRDENVNP---NVAEDDDP 1134
>tr|Q9C959|Q9C959_ARATH Putative DNA helicase; 33057-26178 OS=Arabidopsis thaliana GN=T7P1.7 PE=4 SV=1 Length = 1031
Score = 81.3 bits (199), Expect = 3e-14 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 5/107 (4%) Frame = +2
Query: 47 LSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKS 226 LS + + L+ LR D+V E+ +M YHI GN+ L++ISK+LP++ EELL++NG+GK K Sbjct: 912 LSGILLTALKNLRTDIVKESPDLVMAYHIFGNATLKEISKRLPRTKEELLDINGLGKAKV 971
Query: 227 NKYGARILDVVAKAVERHQSLPKGF-----KENVVPFSKHPAEEDIP 352 +KYG R+L+ + + H G ENV P + AE+D P Sbjct: 972 SKYGDRLLETIDSTINDHYKTRPGSGKRRRDENVNP---NVAEDDDP 1015
>tr|Q7XQB6|Q7XQB6_ORYSJ OSJNBa0088K19.8 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088K19.8 PE=4 SV=2 Length = 1164
Score = 75.5 bits (184), Expect = 2e-12 Identities = 37/85 (43%), Positives = 58/85 (68%) Frame = +2
Query: 26 QARVDPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVN 205 Q++VD +L+A +Y LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+N Sbjct: 975 QSQVDGSLAAELYEALQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEIN 1033
Query: 206 GIGKVKSNKYGARILDVVAKAVERH 280 GIGK K NKYG R+L + + R+ Sbjct: 1034 GIGKNKLNKYGDRVLATIEDFLARY 1058
>tr|Q0JD35|Q0JD35_ORYSJ Os04g0433800 protein OS=Oryza sativa subsp. japonica GN=Os04g0433800 PE=4 SV=1 Length = 1080
Score = 75.5 bits (184), Expect = 2e-12 Identities = 37/85 (43%), Positives = 58/85 (68%) Frame = +2
Query: 26 QARVDPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVN 205 Q++VD +L+A +Y LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+N Sbjct: 891 QSQVDGSLAAELYEALQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEIN 949
Query: 206 GIGKVKSNKYGARILDVVAKAVERH 280 GIGK K NKYG R+L + + R+ Sbjct: 950 GIGKNKLNKYGDRVLATIEDFLARY 974
>tr|A3AU17|A3AU17_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_014289 PE=4 SV=1 Length = 2413
Score = 75.5 bits (184), Expect = 2e-12 Identities = 37/85 (43%), Positives = 58/85 (68%) Frame = +2
Query: 26 QARVDPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVN 205 Q++VD +L+A +Y LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+N Sbjct: 2224 QSQVDGSLAAELYEALQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEIN 2282
Query: 206 GIGKVKSNKYGARILDVVAKAVERH 280 GIGK K NKYG R+L + + R+ Sbjct: 2283 GIGKNKLNKYGDRVLATIEDFLARY 2307
>tr|B8AU06|B8AU06_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15961 PE=4 SV=1 Length = 2505
Score = 75.1 bits (183), Expect = 2e-12 Identities = 37/85 (43%), Positives = 58/85 (68%) Frame = +2
Query: 26 QARVDPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVN 205 Q++VD +L+A +Y LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+N Sbjct: 2316 QSQVDGSLAAELYEALQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRVPRTKEELVEIN 2374
Query: 206 GIGKVKSNKYGARILDVVAKAVERH 280 GIGK K NKYG R+L + + R+ Sbjct: 2375 GIGKNKLNKYGDRVLATIEDFLARY 2399
>tr|B8AU00|B8AU00_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15951 PE=4 SV=1 Length = 346
Score = 71.6 bits (174), Expect = 3e-11 Identities = 35/75 (46%), Positives = 53/75 (70%) Frame = +2
Query: 26 QARVDPALSARIYSDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVN 205 Q++VD +L+A +Y LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+N Sbjct: 129 QSQVDGSLAAELYEALQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEIN 187
Query: 206 GIGKVKSNKYGARIL 250 GIGK K NKYG R + Sbjct: 188 GIGKNKLNKYGDRYI 202
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