DK956664 |
Clone id |
TST39A01NGRL0026_F08 |
Library |
TST39 |
Length |
612 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_F08. 5' end sequence. |
Accession |
DK956664 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL101Contig1 |
Sequence |
CCCATCGTCGTTATGGCATTTGCAAAGGCGAAGAAGACAAAGGCCTATTTCAAGCGCTAT CAAGTGAAGTACAAGAGAAGACGGGCTGGCAAGACTGATCACCGAGCAAGGGCCAGGCTT ACCAACCAGGACAAAAATAAGTACAACACCCCAAAGTATCGCCTTGTTGTGCGATTTACC AACAAGGACATCACTGCCCAGATAACGTATGCCACTCTAGCTGGTGATGTTGTTCTTGCA GCGGCCTACTCTCATGAGCTACCTCAATATGGGCTTAAAACAGGGCTGACAAATTATGCG GCAGCATACTGCACTGGATTGCTACTTGCTCGGAGAGTTTTGAAGCAGTTTGATCTAGAC CAGGAATATGTTGGCAATGAGGAGGCTACAGGGGAGGACTATAACGTTGAGGAGGCTGGT GAACGCCGACCTTTCAGGGCCCTCCTTGATGTTGGCCTTGTGAGAACCACCACGGGGAAC CGGGTTTTTGGAGCCTTGAAGGGTGCTTTAGATGGGGGTCTGGATGTTCCACATAGTGAC AAGAGGTTTGCAGGGGATAGTAAAGAAAGAGAAAGTCATTGAATGCAGATGCTCATAGGA GATATATTTTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0JGY1 |
Definition |
sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica |
Align length |
173 |
Score (bit) |
268.0 |
E-value |
2.0e-71 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SNA3 |
Definition |
tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
174 |
Score (bit) |
278.0 |
E-value |
1.0e-73 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956664|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_F08, 5' (589 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella paten... 278 1e-73 tr|A9TYC5|A9TYC5_PHYPA Predicted protein OS=Physcomitrella paten... 276 8e-73 tr|A9S013|A9S013_PHYPA Predicted protein OS=Physcomitrella paten... 275 1e-72 tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella paten... 274 2e-72 tr|B8A7P9|B8A7P9_ORYSI Putative uncharacterized protein OS=Oryza... 268 2e-70 tr|B7EWY9|B7EWY9_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ... 268 2e-70 tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea... 268 2e-70 tr|B8A7P8|B8A7P8_ORYSI Putative uncharacterized protein OS=Oryza... 266 6e-70 tr|B7SDE4|B7SDE4_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa ... 266 6e-70 tr|B7FJX5|B7FJX5_MEDTR Putative uncharacterized protein OS=Medic... 262 1e-68 tr|A9PB43|A9PB43_POPTR Putative uncharacterized protein OS=Popul... 261 2e-68 tr|A7QAV5|A7QAV5_VITVI Chromosome chr5 scaffold_72, whole genome... 260 4e-68 tr|A7R4R2|A7R4R2_VITVI Chromosome undetermined scaffold_763, who... 259 8e-68 tr|A9PFA8|A9PFA8_POPTR Putative uncharacterized protein OS=Popul... 258 1e-67 tr|B6THG9|B6THG9_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE... 258 2e-67 tr|B6TYP7|B6TYP7_MAIZE 60S ribosomal protein L5-1 OS=Zea mays PE... 257 3e-67 tr|A3A0I1|A3A0I1_ORYSJ Putative uncharacterized protein OS=Oryza... 257 4e-67 tr|Q0JGY2|Q0JGY2_ORYSJ Os01g0896700 protein (Putative uncharacte... 255 1e-66 tr|A9PH69|A9PH69_POPTR Putative uncharacterized protein OS=Popul... 251 2e-65 tr|A9PBZ9|A9PBZ9_POPTR Putative uncharacterized protein OS=Popul... 251 2e-65 tr|Q38HU5|Q38HU5_SOLTU Putative uncharacterized protein OS=Solan... 245 2e-63 tr|A8WNL0|A8WNL0_CAEBR CBR-RPL-5 protein OS=Caenorhabditis brigg... 232 1e-59 tr|A8PSW9|A8PSW9_BRUMA 60S ribosomal protein L5, putative OS=Bru... 223 6e-57 tr|B2YHY0|B2YHY0_9BILA Putative 60S ribosomal protein RPL5 (Frag... 220 5e-56 tr|Q86LY6|Q86LY6_BRALA Ribosomal protein L5 (Fragment) OS=Branch... 219 9e-56 tr|B6LCB3|B6LCB3_BRAFL Putative uncharacterized protein OS=Branc... 218 2e-55 tr|A9UDR2|A9UDR2_9BILA Putative 60S ribosomal protein RP5L (Frag... 218 3e-55 tr|B6RB96|B6RB96_HALDI Ribosomal protein l5 (Fragment) OS=Haliot... 217 5e-55 tr|B7PFS8|B7PFS8_IXOSC 60S ribosomal protein L5, putative OS=Ixo... 216 8e-55 tr|A7S1I9|A7S1I9_NEMVE Predicted protein OS=Nematostella vectens... 216 1e-54
>tr|A9SNA3|A9SNA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_214065 PE=4 SV=1 Length = 293
Score = 278 bits (712), Expect = 1e-73 Identities = 139/174 (79%), Positives = 150/174 (86%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVKYKRRRAGKTD+RAR RLT QDKNKYNTPKYRLVVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRLVVRFTNKDIVAQITYATLAGDIV 74
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE+ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNEQATGEDYNVEE 134
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERES 576 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG SKE +S Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGYSKEDKS 188
>tr|A9TYC5|A9TYC5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226607 PE=4 SV=1 Length = 293
Score = 276 bits (705), Expect = 8e-73 Identities = 138/174 (79%), Positives = 148/174 (85%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVKYKRRRAGKTD+RAR RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRFVVRFTNKDIVAQITYATLAGDIV 74
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNETATGEDYNVEE 134
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERES 576 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG SKE +S Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGFSKEDKS 188
>tr|A9S013|A9S013_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_207358 PE=4 SV=1 Length = 293
Score = 275 bits (704), Expect = 1e-72 Identities = 138/174 (79%), Positives = 148/174 (85%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVKYKRRRAGKTD+RAR RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRYVVRFTNKDIVAQITYATLAGDIV 74
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK F+LDQEYVGNE ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNFELDQEYVGNETATGEDYNVEE 134
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERES 576 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG SKE +S Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGYSKEDKS 188
>tr|A9TXS7|A9TXS7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199314 PE=4 SV=1 Length = 293
Score = 274 bits (701), Expect = 2e-72 Identities = 136/174 (78%), Positives = 148/174 (85%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVKYKRRRAGKTD+RAR RLT QDKNKYNTPKYR VVRFTNKDI AQITYATLAGD+V Sbjct: 15 RFQVKYKRRRAGKTDYRARIRLTTQDKNKYNTPKYRFVVRFTNKDIVAQITYATLAGDIV 74
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 L +AY+HELP+YGLK GLTNYAAAYCTGLLLARR LK +DLD EYVGNE+ATGEDYNVEE Sbjct: 75 LTSAYAHELPRYGLKGGLTNYAAAYCTGLLLARRHLKNYDLDDEYVGNEQATGEDYNVEE 134
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERES 576 +RPFRALLDVGLVRTTTGNRVF VPHS+KRFAG +KE +S Sbjct: 135 GEGKRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDVPHSEKRFAGYNKEDKS 188
>tr|B8A7P9|B8A7P9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04779 PE=4 SV=1 Length = 304
Score = 268 bits (685), Expect = 2e-70 Identities = 133/173 (76%), Positives = 145/173 (83%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVK+KRRR GKTD+RAR RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVLK LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 135
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERE 573 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG K+ + Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 188
>tr|B7EWY9|B7EWY9_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 304
Score = 268 bits (685), Expect = 2e-70 Identities = 133/173 (76%), Positives = 145/173 (83%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVK+KRRR GKTD+RAR RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVLK LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEP 135
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERE 573 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG K+ + Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 188
>tr|A9NKC3|A9NKC3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 297
Score = 268 bits (684), Expect = 2e-70 Identities = 132/174 (75%), Positives = 148/174 (85%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVK+KRRR GKTD+RAR RL NQDKNKYNTPKYRLVVRF+NKD+ AQI YATLAGDVV Sbjct: 15 RFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRLVVRFSNKDVVAQIIYATLAGDVV 74
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 +AAAYS ELP+YGL+ GLTNYAAAYCTGLLLARRVLKQ ++D+EYVGNEEA+GEDY+VE Sbjct: 75 MAAAYSRELPRYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDEEYVGNEEASGEDYSVEP 134
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERES 576 RRPFRALLDVGLVRTTTGNRVF +PHSDKRFAG +KE +S Sbjct: 135 NDARRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYNKESKS 188
>tr|B8A7P8|B8A7P8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04778 PE=4 SV=1 Length = 304
Score = 266 bits (680), Expect = 6e-70 Identities = 132/173 (76%), Positives = 144/173 (83%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVK+KRRR GKTD+RAR RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVL LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 135
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERE 573 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG K+ + Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 188
>tr|B7SDE4|B7SDE4_ORYSJ 60S ribosomal protein L5 OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 304
Score = 266 bits (680), Expect = 6e-70 Identities = 132/173 (76%), Positives = 144/173 (83%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 R+QVK+KRRR GKTD+RAR RLTNQDKNKYNTPKYR VVRFTNKDITAQI YAT+AGD+V Sbjct: 16 RFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIV 75
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 +AAAYSHELP+YGL+ GLTNYAAAYCTGLLLARRVL LDQEY GN EATGEDY VE Sbjct: 76 MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP 135
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERE 573 A ERRPFRALLDVGL+RTTTGNRVF +PHSDKRFAG K+ + Sbjct: 136 ADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEK 188
>tr|B7FJX5|B7FJX5_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 302
Score = 262 bits (669), Expect = 1e-68 Identities = 129/173 (74%), Positives = 143/173 (82%) Frame = +1
Query: 55 RYQVKYKRRRAGKTDHRARARLTNQDKNKYNTPKYRLVVRFTNKDITAQITYATLAGDVV 234 RYQVK+KRRR GKTD+RAR RL NQDKNKYNTPKYR VVRFTNKDI AQI A++AGD+V Sbjct: 15 RYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIV 74
Query: 235 LAAAYSHELPQYGLKTGLTNYAAAYCTGLLLARRVLKQFDLDQEYVGNEEATGEDYNVEE 414 LAAAYSHELP +GLK GLTNYAAAYCTGLLLARRVLK ++D+EY GN EATGEDY+VE Sbjct: 75 LAAAYSHELPHFGLKVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEP 134
Query: 415 AGERRPFRALLDVGLVRTTTGNRVFXXXXXXXXXXXXVPHSDKRFAGDSKERE 573 A RRPFRALLDVGLV+TTTGNRVF +PHSDKRFAG KE++ Sbjct: 135 AESRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKK 187
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