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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956670
Clone id TST39A01NGRL0026_F14
Library
Length 592
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_F14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATATAAGTTGGGTTGAAGCATTTATGGAAGACAGGCGCAGCCGGCAAATTCTGGGTGAT
GTTTGCGATTGTCAATTTGTCGCAGGGTCAAGTGAAAGCGTATCCCACCGATGGACTGGC
CGTGTTTTTAAACCTCGGATCCCTTGCAGGCTCGGTCGCCCCCATTGAACCAATCGCTGT
TCTTTGCTCCACCCATCTCTCCTCTCTCTTCGTCCTCCTCATTTCTCTTCATAAAAAGCC
CGAAATACTACACGCTTACTGCAAGGGCGAAGAGAGACAACTCCAAGCAGGAAGCCGCTC
CAACAGCGGCTGCAGACAAAGGCAAGTCACCTGCCACTGCTAAAGAGGAGGATGAAGAGT
ATGAAGAGGTTGAGATTCCATGGCTTCAAGAAAAAGCAGAGACTTTATATGAGAATGTTG
GAGTTGCAGTAAATGCCATACCAGGTCCAAGAGTTGGCAGCACATCACTTCCATGGCTTC
TTGCAGCCCCCATTGGCTACCTCGGCATCACCTTTTGTAATTGCGGTAGTGAAGACCGTG
CTCAAGTATAGCTCCCCCCAAAGCTAAAAGGCGTCGCCGAGTGGACCAAAAT
■■Homology search results ■■ -
sp_hit_id O69161
Definition sp|O69161|RNC_BRAJA Ribonuclease 3 OS=Bradyrhizobium japonicum
Align length 47
Score (bit) 31.6
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956670|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_F14, 5'
         (592 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O69161|RNC_BRAJA Ribonuclease 3 OS=Bradyrhizobium japonicum G...    32   3.1  
sp|A4QP75|TRM2_DANRE tRNA (uracil-5-)-methyltransferase homolog ...    31   5.3  

>sp|O69161|RNC_BRAJA Ribonuclease 3 OS=Bradyrhizobium japonicum
           GN=rnc PE=3 SV=2
          Length = 250

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
 Frame = +1

Query: 34  RRSRQILGDVCDCQFVA--------GSSESVSHRWTGRVFKPRIPCR 150
           R  + +LGD+C+    A         ++E V   WT R+ KPR P R
Sbjct: 128 RLRKSVLGDICEAVIGAIFLDGGHAAAAEFVKRNWTERMHKPRRPLR 174


>sp|A4QP75|TRM2_DANRE tRNA (uracil-5-)-methyltransferase homolog
           OS=Danio rerio GN=Trmt2b PE=2 SV=1
          Length = 473

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 4   ISWVEAFMEDRRSRQILGDVCDCQFVAGSSESV 102
           I  +E  +ED +    L  VC+C+F+AG +E V
Sbjct: 341 IELIEQAVEDAKFNAALNRVCNCEFLAGKAEVV 373
tr_hit_id Q9FNN4
Definition tr|Q9FNN4|Q9FNN4_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAH20 OS=Arabidopsis thaliana
Align length 90
Score (bit) 73.9
E-value 6.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956670|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_F14, 5'
         (592 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FNN4|Q9FNN4_ARATH Arabidopsis thaliana genomic DNA, chromos...    74   6e-12
tr|Q93VT6|Q93VT6_ARATH Putative uncharacterized protein At5g0854...    74   6e-12
tr|Q8LCU2|Q8LCU2_ARATH Putative uncharacterized protein OS=Arabi...    74   6e-12
tr|Q7XKI6|Q7XKI6_ORYSJ Os04g0527800 protein OS=Oryza sativa subs...    72   3e-11
tr|Q01HN9|Q01HN9_ORYSA OSIGBa0115K01-H0319F09.13 protein OS=Oryz...    72   3e-11
tr|B8ASC1|B8ASC1_ORYSI Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|A3AVR8|A3AVR8_ORYSJ Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|A9TBF4|A9TBF4_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   4e-11
tr|A7QNP1|A7QNP1_VITVI Chromosome undetermined scaffold_133, who...    63   1e-08
tr|A5BDZ0|A5BDZ0_VITVI Putative uncharacterized protein OS=Vitis...    63   1e-08
tr|A5FK29|A5FK29_FLAJ1 Major facilitator superfamily MFS_1 OS=Fl...    34   7.2  
tr|Q4SE23|Q4SE23_TETNG Chromosome 3 SCAF14626, whole genome shot...    33   9.2  
tr|A7EPQ5|A7EPQ5_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.4  

>tr|Q9FNN4|Q9FNN4_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MAH20 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 471

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 38/90 (42%), Positives = 51/90 (56%)
 Frame = +3

Query: 246 YYTLTARAKRDNSKQEAAPTAAADKGKSPATAKXXXXXXXXXXIPWLQEKAETLYENVGV 425
           + +++A A +  S+   APT AA K  S    +          +PW+QEKA  L E  G 
Sbjct: 146 HISISAAAPKKKSETVTAPTPAAKKNSS---VEEETEEEVEEDMPWIQEKALDLVEFTGS 202

Query: 426 AVNAIPGPRVGSTSLPWLLAAPIGYLGITF 515
              AIPGPRVGS+ LPW+LA P+ Y G+TF
Sbjct: 203 VSQAIPGPRVGSSKLPWMLAVPLAYAGVTF 232


>tr|Q93VT6|Q93VT6_ARATH Putative uncharacterized protein At5g08540
           OS=Arabidopsis thaliana GN=At5g08540 PE=2 SV=1
          Length = 346

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 38/90 (42%), Positives = 51/90 (56%)
 Frame = +3

Query: 246 YYTLTARAKRDNSKQEAAPTAAADKGKSPATAKXXXXXXXXXXIPWLQEKAETLYENVGV 425
           + +++A A +  S+   APT AA K  S    +          +PW+QEKA  L E  G 
Sbjct: 44  HISISAAAPKKKSETVTAPTPAAKKNSS---VEEETEEEVEEDMPWIQEKALDLVEFTGS 100

Query: 426 AVNAIPGPRVGSTSLPWLLAAPIGYLGITF 515
              AIPGPRVGS+ LPW+LA P+ Y G+TF
Sbjct: 101 VSQAIPGPRVGSSKLPWMLAVPLAYAGVTF 130


>tr|Q8LCU2|Q8LCU2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 346

 Score = 73.9 bits (180), Expect = 6e-12
 Identities = 38/90 (42%), Positives = 51/90 (56%)
 Frame = +3

Query: 246 YYTLTARAKRDNSKQEAAPTAAADKGKSPATAKXXXXXXXXXXIPWLQEKAETLYENVGV 425
           + +++A A +  S+   APT AA K  S    +          +PW+QEKA  L E  G 
Sbjct: 44  HISISAAAPKKQSETVTAPTPAAKKNSS---VEEETEEEVEEDMPWIQEKALDLVEFTGS 100

Query: 426 AVNAIPGPRVGSTSLPWLLAAPIGYLGITF 515
              AIPGPRVGS+ LPW+LA P+ Y G+TF
Sbjct: 101 VSQAIPGPRVGSSKLPWMLAVPLAYAGVTF 130


>tr|Q7XKI6|Q7XKI6_ORYSJ Os04g0527800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0038O10.22 PE=2 SV=2
          Length = 338

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 37/87 (42%), Positives = 49/87 (56%)
 Frame = +3

Query: 255 LTARAKRDNSKQEAAPTAAADKGKSPATAKXXXXXXXXXXIPWLQEKAETLYENVGVAVN 434
           L ARAKR  S+  AA    A+    P   +          +PW+Q+KA  L E  G    
Sbjct: 49  LVARAKRPGSRTAAASRQPANPSDVPKR-EADEEVEVEEEMPWIQDKALDLVEFTGTVTQ 107

Query: 435 AIPGPRVGSTSLPWLLAAPIGYLGITF 515
           AIPGPRVGS+ +PWLLA P+ Y+G++F
Sbjct: 108 AIPGPRVGSSPVPWLLAVPLAYVGVSF 134


>tr|Q01HN9|Q01HN9_ORYSA OSIGBa0115K01-H0319F09.13 protein OS=Oryza
           sativa GN=OSIGBa0115K01-H0319F09.13 PE=4 SV=1
          Length = 338

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 37/87 (42%), Positives = 49/87 (56%)
 Frame = +3

Query: 255 LTARAKRDNSKQEAAPTAAADKGKSPATAKXXXXXXXXXXIPWLQEKAETLYENVGVAVN 434
           L ARAKR  S+  AA    A+    P   +          +PW+Q+KA  L E  G    
Sbjct: 49  LVARAKRPGSRTAAASRQPANPSDVPKR-EADEEVEVEEEMPWIQDKALDLVEFTGTVTQ 107

Query: 435 AIPGPRVGSTSLPWLLAAPIGYLGITF 515
           AIPGPRVGS+ +PWLLA P+ Y+G++F
Sbjct: 108 AIPGPRVGSSPVPWLLAVPLAYVGVSF 134


>tr|B8ASC1|B8ASC1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16722 PE=4 SV=1
          Length = 338

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 37/87 (42%), Positives = 49/87 (56%)
 Frame = +3

Query: 255 LTARAKRDNSKQEAAPTAAADKGKSPATAKXXXXXXXXXXIPWLQEKAETLYENVGVAVN 434
           L ARAKR  S+  AA    A+    P   +          +PW+Q+KA  L E  G    
Sbjct: 49  LVARAKRPGSRTAAASRQPANPSDVPKR-EADEEVEVEEEMPWIQDKALDLVEFTGTVTQ 107

Query: 435 AIPGPRVGSTSLPWLLAAPIGYLGITF 515
           AIPGPRVGS+ +PWLLA P+ Y+G++F
Sbjct: 108 AIPGPRVGSSPVPWLLAVPLAYVGVSF 134


>tr|A3AVR8|A3AVR8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014890 PE=4 SV=1
          Length = 368

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 37/87 (42%), Positives = 49/87 (56%)
 Frame = +3

Query: 255 LTARAKRDNSKQEAAPTAAADKGKSPATAKXXXXXXXXXXIPWLQEKAETLYENVGVAVN 434
           L ARAKR  S+  AA    A+    P   +          +PW+Q+KA  L E  G    
Sbjct: 49  LVARAKRPGSRTAAASRQPANPSDVPKR-EADEEVEVEEEMPWIQDKALDLVEFTGTVTQ 107

Query: 435 AIPGPRVGSTSLPWLLAAPIGYLGITF 515
           AIPGPRVGS+ +PWLLA P+ Y+G++F
Sbjct: 108 AIPGPRVGSSPVPWLLAVPLAYVGVSF 134


>tr|A9TBF4|A9TBF4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_45363 PE=4 SV=1
          Length = 249

 Score = 63.5 bits (153), Expect(2) = 4e-11
 Identities = 27/47 (57%), Positives = 34/47 (72%)
 Frame = +3

Query: 375 IPWLQEKAETLYENVGVAVNAIPGPRVGSTSLPWLLAAPIGYLGITF 515
           I W+QEKAE L    G A++ +PGPRV  T +PWL+A P+ YLGITF
Sbjct: 10  ISWIQEKAEDLVIATGQAIDRVPGPRVAETRMPWLVALPLAYLGITF 56



 Score = 26.9 bits (58), Expect(2) = 4e-11
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 490 PLATSASPFVIAVVKTVLKYSSPQ 561
           PLA     FVIA V+T  KY+SP+
Sbjct: 48  PLAYLGITFVIACVRTYKKYTSPK 71


>tr|A7QNP1|A7QNP1_VITVI Chromosome undetermined scaffold_133, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00002604001 PE=4 SV=1
          Length = 345

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 375 IPWLQEKAETLYENVGVAVNAIPGPRVGSTSLPWLLAAPIGYLGITF 515
           +PW++EKA  L E  G    AIPGPRVG +S PW+LA P+ Y GITF
Sbjct: 88  LPWIEEKALDLVEFSGSVAQAIPGPRVGRSSFPWILAIPLAYAGITF 134


>tr|A5BDZ0|A5BDZ0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_030897 PE=4 SV=1
          Length = 371

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +3

Query: 375 IPWLQEKAETLYENVGVAVNAIPGPRVGSTSLPWLLAAPIGYLGITF 515
           +PW++EKA  L E  G    AIPGPRVG +S PW+LA P+ Y GITF
Sbjct: 88  LPWIEEKALDLVEFSGSVAQAIPGPRVGRSSFPWILAIPLAYAGITF 134