DK956676
Clone id TST39A01NGRL0026_F20
Library
Length 612
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_F20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTCTCCTCACCCGCCATTTGTCAGCACGCTGCTTTGTCTTCGCGCAGCCACAGCTGCCGC
TTCTGGCTCGTCGTTGCCGGCTGCATCACCTCGCATCCGTCTGTAGCGTGGACTCGCGTG
GTGGCGCACACGCAGCGGCAGCTCCTCCACTGCAGCTCTCGACAGCGAGAAGGCTCAATC
GCGTGAATCAGCACGGTGGGCTATTCGACTCGATCACCCAACCATCGCACGTGCAGAGGC
TAGGGCCTCTTCTTCCTCCTCCTCCCTCTGCGGCTTCTCACCTCCGAAGCCACATTTTGG
CAATGGCAGCTCGAAGTGCTTGCCAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTAC
CTTGCGTTCCTTTCCCTACATCCTCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAA
ACCACCTCCCGCTTCATGTCACTGCATCAGCATCGGATAGCCGCAAGGCAATGAAAGTTG
ATGGAACGGTCTTTACGGACAGAACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGGG
CTCCATCAAGCGTACCTGCTGCTGCTCCCATTTCTGTGGTGGCCACGGAAGTGGAGACTT
TACCCTTGGATA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956676|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_F20, 5'
(612 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A5CUP1
Definition tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Align length 88
Score (bit) 33.5
E-value 10.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956676|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_F20, 5'
(612 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein OS=Claviba... 33 10.0
tr|A4H6Q5|A4H6Q5_LEIBR Putative uncharacterized protein OS=Leish... 33 10.0

>tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein
OS=Clavibacter michiganensis subsp. michiganensis
(strain NCPPB 382) GN=CMM_2744 PE=4 SV=1
Length = 237

Score = 33.5 bits (75), Expect = 10.0
Identities = 24/88 (27%), Positives = 36/88 (40%)
Frame = -3

Query: 556 GTLDGAPCLATGLMLSTVLSVKTVPSTFIALRLSDADAVT*SGRWFARQELPKLTLVEDV 377
G + P + GL L V +SDA ++ R ARQ L + L +V
Sbjct: 113 GAVFAFPLVVAGLSLGAVDLYSRTARDISTQEVSDATTLS---RIVARQVLRRALLAAEV 169

Query: 376 GKGTQGSWVREFKREELWQALRAAIAKM 293
+ G W + R E+ QA +A+M
Sbjct: 170 RQEETGGWEGRYSRREVHQATGMVVAQM 197


>tr|A4H6Q5|A4H6Q5_LEIBR Putative uncharacterized protein
OS=Leishmania braziliensis GN=LbrM11_V2.1090 PE=4 SV=1
Length = 626

Score = 33.5 bits (75), Expect = 10.0
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = -3

Query: 556 GTLDGAPCLATGLMLSTVLSVKTVPSTFIALRLSDA 449
GT DGA C+A L++ V+++ VPS ++ +L+ A
Sbjct: 589 GTCDGAICIAVPLIVCMVVNILAVPSAYVFYKLTKA 624