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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956680
Clone id TST39A01NGRL0026_F24
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_F24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCGGGAAAAATTGTTGAAGAGGGGAGGCATGCCGATCTCTTGAGAAAAGGAGGAACATA
TGCGCGCCTAATTCGGCTCCAACATCAGCTTTACAATCATCCCTCCCCTGACATGCAGCA
GGAATTTTTACAAGATTTCCTGGAGAGACAAGCACCTAGGTGACAACAGCTTTTGTAGTG
GCGAAAGCAAAACTTTTACACTTCATGGGCATGTACAATATGTTAAATGTGAATATCCTG
CAGCATTGTCCAAAGAAGGCGCTGCGACGCAAGCTATAGCCTTTCCAAAGGCTGTCCTGC
AACAAAGGTGGTGCTCATGTGAGCCACTTGGAAGGCAAGTGGCTGATTTTGCTTGATTTC
TTTAATTTTCATGGCAATGATTGAGCAAATCTGATTGTGAATATCACATTTTCAGAGCCC
CTGGTTCAAAAGTGCTTTCTCAGATCACAAAACAAGAAAATGCATGGGGAAGGTGTAGCA
TATAGTTATTTGAACAGTGTACACAAGGTGGAATTACTGTAATCCACTCAAAGTGATAAT
ATTACTTCCAATTTTTTTTTCCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q39E73
Definition sp|Q39E73|MSBA_BURS3 Lipid A export ATP-binding/permease protein msbA OS=Burkholderia sp. (strain 383)
Align length 29
Score (bit) 43.1
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956680|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_F24, 5'
         (562 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q39E73|MSBA_BURS3 Lipid A export ATP-binding/permease protein...    43   0.001
sp|Q1BUV6|MSBA_BURCA Lipid A export ATP-binding/permease protein...    43   0.001
sp|P36619|PMD1_SCHPO Leptomycin B resistance protein pmd1 OS=Sch...    40   0.010
sp|P59653|COMA_STRR6 Transport/processing ATP-binding protein co...    40   0.010
sp|Q03727|COMA_STRPN Transport/processing ATP-binding protein co...    40   0.010
sp|B2GUP8|ABCB8_XENTR ATP-binding cassette sub-family B member 8...    38   0.030
sp|Q9KQW9|MSBA_VIBCH Lipid A export ATP-binding/permease protein...    38   0.039
sp|Q2SZW0|MSBA_BURTA Lipid A export ATP-binding/permease protein...    38   0.039
sp|Q63VX7|MSBA_BURPS Lipid A export ATP-binding/permease protein...    38   0.039
sp|Q3JUI6|MSBA_BURP1 Lipid A export ATP-binding/permease protein...    38   0.039
sp|Q62IG3|MSBA_BURMA Lipid A export ATP-binding/permease protein...    38   0.039
sp|Q87R16|MSBA_VIBPA Lipid A export ATP-binding/permease protein...    36   0.11 
sp|Q21WN9|MSBA_RHOFD Lipid A export ATP-binding/permease protein...    36   0.11 
sp|Q9M1Q9|MDR17_ARATH Multidrug resistance protein 17 OS=Arabido...    36   0.11 
sp|Q56A55|ABCB8_DANRE ATP-binding cassette sub-family B member 8...    36   0.15 
sp|Q7NZU6|MSBA_CHRVO Lipid A export ATP-binding/permease protein...    35   0.20 
sp|Q9SYI2|MDR3_ARATH Putative multidrug resistance protein 3 OS=...    35   0.20 
sp|Q9QYJ4|ABCB9_RAT ATP-binding cassette sub-family B member 9 O...    35   0.20 
sp|Q9JJ59|ABCB9_MOUSE ATP-binding cassette sub-family B member 9...    35   0.20 
sp|Q3SFZ6|MSBA_THIDA Lipid A export ATP-binding/permease protein...    35   0.25 
sp|Q142P6|MSBA_BURXL Lipid A export ATP-binding/permease protein...    35   0.25 
sp|Q5P2S7|MSBA_AZOSE Lipid A export ATP-binding/permease protein...    35   0.25 
sp|Q96J66|ABCCB_HUMAN ATP-binding cassette transporter sub-famil...    35   0.25 
sp|Q5RKI8|ABCB8_RAT ATP-binding cassette sub-family B member 8, ...    35   0.25 
sp|Q5RFQ9|ABCB8_PONAB ATP-binding cassette sub-family B member 8...    35   0.25 
sp|Q9NUT2|ABCB8_HUMAN ATP-binding cassette sub-family B member 8...    35   0.25 
sp|Q12C33|MSBA_POLSJ Lipid A export ATP-binding/permease protein...    35   0.33 
sp|Q9LHK4|MDR22_ARATH Putative multidrug resistance protein 22 O...    35   0.33 
sp|Q9LJX0|MDR11_ARATH Multidrug resistance protein 11 OS=Arabido...    35   0.33 
sp|O31708|YKNV_BACSU Uncharacterized ABC transporter ATP-binding...    34   0.43 

>sp|Q39E73|MSBA_BURS3 Lipid A export ATP-binding/permease protein
           msbA OS=Burkholderia sp. (strain 383) GN=msbA PE=3 SV=2
          Length = 593

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           AGKIVEEG H +LLR GG YA L R+Q+Q
Sbjct: 561 AGKIVEEGSHDELLRHGGLYAHLHRIQYQ 589


>sp|Q1BUV6|MSBA_BURCA Lipid A export ATP-binding/permease protein
           msbA OS=Burkholderia cenocepacia (strain AU 1054)
           GN=msbA PE=3 SV=2
          Length = 593

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           AGKIVEEG H +LLR GG YA L R+Q+Q
Sbjct: 561 AGKIVEEGSHDELLRHGGLYAHLHRIQYQ 589


>sp|P36619|PMD1_SCHPO Leptomycin B resistance protein pmd1
           OS=Schizosaccharomyces pombe GN=pmd1 PE=2 SV=2
          Length = 1362

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQLYNHPSPDMQQEFLQD 136
           AGKIVE+G H +LL   G YARL+  Q         +M +E L+D
Sbjct: 640 AGKIVEQGSHNELLDLNGAYARLVEAQKLSGGEKDQEMVEEELED 684


>sp|P59653|COMA_STRR6 Transport/processing ATP-binding protein comA
           OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
           GN=comA PE=3 SV=1
          Length = 717

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLI 73
           GKIVEEG+HADLL +GG YA L+
Sbjct: 693 GKIVEEGKHADLLAQGGFYAHLV 715


>sp|Q03727|COMA_STRPN Transport/processing ATP-binding protein comA
           OS=Streptococcus pneumoniae GN=comA PE=3 SV=3
          Length = 717

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 17/23 (73%), Positives = 20/23 (86%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLI 73
           GKIVEEG+HADLL +GG YA L+
Sbjct: 693 GKIVEEGKHADLLAQGGFYAHLV 715


>sp|B2GUP8|ABCB8_XENTR ATP-binding cassette sub-family B member 8,
           mitochondrial OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1
          Length = 688

 Score = 38.1 bits (87), Expect = 0.030
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           G++ E G H DLLR+GG YA LIR Q+Q
Sbjct: 655 GQVAEFGTHQDLLRRGGLYADLIRRQNQ 682


>sp|Q9KQW9|MSBA_VIBCH Lipid A export ATP-binding/permease protein
           msbA OS=Vibrio cholerae GN=msbA PE=1 SV=1
          Length = 582

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQ 82
           G+I+E GRHADLL + G YA+L R+Q
Sbjct: 554 GEIIERGRHADLLAQDGAYAQLHRIQ 579


>sp|Q2SZW0|MSBA_BURTA Lipid A export ATP-binding/permease protein
           msbA OS=Burkholderia thailandensis (strain E264 / ATCC
           700388 / DSM 13276 / CIP 106301) GN=msbA PE=3 SV=1
          Length = 596

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           GKIVE G H +LL +GG YA L R+Q Q
Sbjct: 565 GKIVESGSHRELLEQGGLYAHLHRIQFQ 592


>sp|Q63VX7|MSBA_BURPS Lipid A export ATP-binding/permease protein
           msbA OS=Burkholderia pseudomallei GN=msbA PE=3 SV=1
          Length = 596

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           GKIVE G H +LL +GG YA L R+Q Q
Sbjct: 565 GKIVESGSHRELLEQGGLYAHLHRIQFQ 592


>sp|Q3JUI6|MSBA_BURP1 Lipid A export ATP-binding/permease protein
           msbA OS=Burkholderia pseudomallei (strain 1710b) GN=msbA
           PE=3 SV=2
          Length = 596

 Score = 37.7 bits (86), Expect = 0.039
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           GKIVE G H +LL +GG YA L R+Q Q
Sbjct: 565 GKIVESGSHRELLEQGGLYAHLHRIQFQ 592
tr_hit_id Q1QNT0
Definition tr|Q1QNT0|Q1QNT0_NITHX ABC transporter related OS=Nitrobacter hamburgensis (strain X14 / DSM 10229)
Align length 28
Score (bit) 43.9
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956680|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_F24, 5'
         (562 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1QNT0|Q1QNT0_NITHX ABC transporter related OS=Nitrobacter ha...    44   0.006
tr|B4REV4|B4REV4_PHEZH ABC-type multidrug transport system, ATPa...    44   0.006
tr|B4V906|B4V906_9ACTO Putative uncharacterized protein OS=Strep...    44   0.006
tr|Q9ABC5|Q9ABC5_CAUCR ABC transporter, HlyB/MsbA family OS=Caul...    44   0.008
tr|Q0BD71|Q0BD71_BURCM Lipid A ABC exporter, fused ATPase and in...    44   0.008
tr|B1YU65|B1YU65_BURA4 Lipid A ABC exporter, fused ATPase and in...    44   0.008
tr|B8GYH7|B8GYH7_CAUCR Phospholipid-lipopolysaccharide ABC trans...    44   0.008
tr|B1TBW0|B1TBW0_9BURK Lipid A ABC exporter, fused ATPase and in...    44   0.008
tr|B1FG88|B1FG88_9BURK Lipid A ABC exporter, fused ATPase and in...    44   0.008
tr|A2W8K2|A2W8K2_9BURK ABC transporter OS=Burkholderia dolosa AU...    44   0.008
tr|Q3STR5|Q3STR5_NITWN ABC transporter, transmembrane region OS=...    43   0.010
tr|B1JW54|B1JW54_BURCC Lipid A ABC exporter, fused ATPase and in...    43   0.010
tr|B0UR40|B0UR40_METS4 ABC transporter related OS=Methylobacteri...    43   0.010
tr|A0K981|A0K981_BURCH Lipid A ABC exporter, fused ATPase and in...    43   0.010
tr|A2VWK2|A2VWK2_9BURK ABC transporter, transmembrane region OS=...    43   0.010
tr|A3WVD7|A3WVD7_9BRAD ABC transporter, transmembrane region OS=...    43   0.014
tr|A5EN85|A5EN85_BRASB Putative ABC transporter (Permease and AT...    42   0.018
tr|A4YYC3|A4YYC3_BRASO Putative ABC transporter (Permease and AT...    42   0.018
tr|Q1YK15|Q1YK15_MOBAS ATP-binding protein, ABC-type transporter...    42   0.023
tr|Q6N2Q8|Q6N2Q8_RHOPA Putative ABC transporter ATP-binding prot...    41   0.039
tr|Q219E8|Q219E8_RHOPB ABC transporter related OS=Rhodopseudomon...    41   0.039
tr|Q13AP4|Q13AP4_RHOPS ABC transporter related OS=Rhodopseudomon...    41   0.039
tr|B3QJQ4|B3QJQ4_RHOPT ABC transporter related OS=Rhodopseudomon...    41   0.039
tr|A9AJI7|A9AJI7_BURM1 Lipid A ABC exporter, fused ATPase and in...    41   0.039
tr|A4JGJ2|A4JGJ2_BURVG Lipid A ABC exporter, fused ATPase and in...    41   0.039
tr|Q2CAB6|Q2CAB6_9RHOB Efflux ABC transporter, transmembrane ATP...    41   0.039
tr|Q0G6Q5|Q0G6Q5_9RHIZ ABC transporter, nucleotide binding/ATPas...    41   0.039
tr|Q0G360|Q0G360_9RHIZ ABC transporter, nucleotide binding/ATPas...    41   0.039
tr|Q0D0S4|Q0D0S4_ASPTN Putative uncharacterized protein OS=Asper...    41   0.039
tr|Q2K4H3|Q2K4H3_RHIEC Probable multidrug ABC transporter, ATP-b...    41   0.051

>tr|Q1QNT0|Q1QNT0_NITHX ABC transporter related OS=Nitrobacter
           hamburgensis (strain X14 / DSM 10229) GN=Nham_1292 PE=3
           SV=1
          Length = 601

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 19/28 (67%), Positives = 22/28 (78%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           G+IVE GRH DLLR+GG YA   RLQH+
Sbjct: 561 GEIVERGRHDDLLRRGGRYASFFRLQHR 588


>tr|B4REV4|B4REV4_PHEZH ABC-type multidrug transport system, ATPase
           and permease components OS=Phenylobacterium zucineum
           (strain HLK1) GN=PHZ_c0528 PE=4 SV=1
          Length = 596

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARL 70
           G+IVEEGRHADL+RKGG YARL
Sbjct: 567 GRIVEEGRHADLVRKGGAYARL 588


>tr|B4V906|B4V906_9ACTO Putative uncharacterized protein
           OS=Streptomyces sp. Mg1 GN=SSAG_04317 PE=4 SV=1
          Length = 627

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 20/34 (58%), Positives = 23/34 (67%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQLYNHPS 106
           G ++EEG H +LL  GGTYARL RLQ   Y  PS
Sbjct: 582 GSLIEEGTHGELLALGGTYARLFRLQADAYLTPS 615


>tr|Q9ABC5|Q9ABC5_CAUCR ABC transporter, HlyB/MsbA family
           OS=Caulobacter crescentus GN=CC_0305 PE=3 SV=1
          Length = 607

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQLYNHPSPDMQQE 124
           G++VE G HA+L+R GG YARL + Q    +HP+PD   E
Sbjct: 567 GRVVETGSHAELVRAGGLYARLAKAQD--LDHPAPDQDGE 604


>tr|Q0BD71|Q0BD71_BURCM Lipid A ABC exporter, fused ATPase and inner
           membrane subunits MsbA OS=Burkholderia ambifaria (strain
           ATCC BAA-244 / AMMD) GN=Bamb_2346 PE=3 SV=1
          Length = 583

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           AGKIVEEG H +LLR GG YA L R+Q+Q
Sbjct: 551 AGKIVEEGSHEELLRHGGLYAHLHRIQYQ 579


>tr|B1YU65|B1YU65_BURA4 Lipid A ABC exporter, fused ATPase and inner
           membrane subunits MsbA OS=Burkholderia ambifaria (strain
           MC40-6) GN=BamMC406_2226 PE=4 SV=1
          Length = 593

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           AGKIVEEG H +LLR GG YA L R+Q+Q
Sbjct: 561 AGKIVEEGSHEELLRHGGLYAHLHRIQYQ 589


>tr|B8GYH7|B8GYH7_CAUCR Phospholipid-lipopolysaccharide ABC
           transporter OS=Caulobacter crescentus NA1000
           GN=CCNA_00307 PE=4 SV=1
          Length = 607

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = +2

Query: 5   GKIVEEGRHADLLRKGGTYARLIRLQHQLYNHPSPDMQQE 124
           G++VE G HA+L+R GG YARL + Q    +HP+PD   E
Sbjct: 567 GRVVETGSHAELVRAGGLYARLAKAQD--LDHPAPDQDGE 604


>tr|B1TBW0|B1TBW0_9BURK Lipid A ABC exporter, fused ATPase and inner
           membrane subunits MsbA OS=Burkholderia ambifaria MEX-5
           GN=BamMEX5DRAFT_5276 PE=3 SV=1
          Length = 583

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           AGKIVEEG H +LLR GG YA L R+Q+Q
Sbjct: 551 AGKIVEEGSHEELLRHGGLYAHLHRIQYQ 579


>tr|B1FG88|B1FG88_9BURK Lipid A ABC exporter, fused ATPase and inner
           membrane subunits MsbA OS=Burkholderia ambifaria
           IOP40-10 GN=BamIOP4010DRAFT_3048 PE=3 SV=1
          Length = 583

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           AGKIVEEG H +LLR GG YA L R+Q+Q
Sbjct: 551 AGKIVEEGSHEELLRHGGLYAHLHRIQYQ 579


>tr|A2W8K2|A2W8K2_9BURK ABC transporter OS=Burkholderia dolosa
           AUO158 GN=BDAG_01008 PE=3 SV=1
          Length = 622

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 2   AGKIVEEGRHADLLRKGGTYARLIRLQHQ 88
           AG+IVEEG H DLLR GG YA L R+Q+Q
Sbjct: 590 AGRIVEEGSHDDLLRHGGLYAHLHRIQYQ 618