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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956690
Clone id TST39A01NGRL0026_G10
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_G10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATAGAAGTTGCCACTTTCTTAGCAATCGGCTATGGTGTTCTCTTAGCAGAAAAGGTGGCT
TCTTCCCCCCAGTTGCCTTTTTCCTACACATCGCTGCTTCTGCTCAAATCTGCTTCACCC
ACTTTCAAAAGACTGCTTATGCTGAAGCGCACAACAACATGAGAGGATGCCTCAGCTATG
TAAGGAGAAGAAGTAGGAAGGATATAGTGGGCAACAGTCCGAGTTCTAAAAGAGACAGTG
ACGATGATGACATGAAGAATGAAGTCTGGTTTGATTCGAGGCTAATATTCGAATCTGATT
CAGATGATGATTTCAAGTCGGTGAATGGCGATTCATTGCCTTCAAGCTTTGGCTACTCTT
ACTCGAGCCAAGGAGCACCACGGCCAACCTTTTCATCTTTGAAAGAAAGGATGGAAGAAC
TGGTTCGAGAAAACGGTGTACATGAAGCCCACTTTGTCCTACCTCAAAGTGGGCAAACCA
GCCCAGAAGAGAAGAAAACACTGGGACAATTGTTCACTTTCAAGCTAGAA
■■Homology search results ■■ -
sp_hit_id Q9LK32
Definition sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana
Align length 90
Score (bit) 46.6
E-value 7.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956690|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_G10, 5'
         (530 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabi...    47   7e-05
sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''...    30   5.5  
sp|Q96G27|WBP1_HUMAN WW domain-binding protein 1 OS=Homo sapiens...    30   9.4  
sp|Q5MD89|VGFR3_DANRE Vascular endothelial growth factor recepto...    30   9.4  
sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1 OS=...    30   9.4  

>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210
           OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
          Length = 234

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQGAPRPTFSSLKERMEELVREN 434
           K+E +FDS+   +SDSDDDF SVNGD               P+ +FS    R   L+   
Sbjct: 81  KDETFFDSQPWLQSDSDDDFHSVNGDFTPSLG-------NTPKSSFSDRPPRFHNLI--- 130

Query: 435 GVHEAHFVLPQSGQTSP---EEKKTLGQLF 515
                H   P  G +SP     +K LG+LF
Sbjct: 131 ----FHEKKPSRGSSSPAPLPRRKKLGELF 156


>sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''
           OS=Adiantum capillus-veneris GN=rpoC2 PE=2 SV=2
          Length = 1420

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = +3

Query: 21  SNRLWCSLSRKGGFF--PPVAFFLHIAASAQICFTHFQKTAYAEAHNNM---RGCLSYVR 185
           S+R WC + RKG FF  P   +  H  +S+ +   +      A+  NN+    G L  +R
Sbjct: 644 SSRPWCRVVRKGNFFLIPEEVYLTHEPSSSILVTNNAIVKKGAQITNNIITKSGGLIRMR 703

Query: 186 RRSR 197
           +RSR
Sbjct: 704 KRSR 707


>sp|Q96G27|WBP1_HUMAN WW domain-binding protein 1 OS=Homo sapiens
           GN=WBP1 PE=1 SV=1
          Length = 269

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -3

Query: 297 QIRILASNQTRLHSSCHHRHCLF*NSDCCPLYPS--YFFSLHS*GIL-SCCCALQHKQSF 127
           Q+R L          C   HC    + CC  Y    +F+ L +  IL SCCCA +H+++ 
Sbjct: 23  QLRELCPGVNNQPYLCESGHCCG-ETGCCTYYYELWWFWLLWTVLILFSCCCAFRHRRAK 81

Query: 126 ESG*SRFEQKQR 91
                R +Q+QR
Sbjct: 82  ----LRLQQQQR 89


>sp|Q5MD89|VGFR3_DANRE Vascular endothelial growth factor receptor 3
            OS=Danio rerio GN=flt4 PE=2 SV=1
          Length = 1357

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 369  QGAPR--PTFSSLKERMEELVRENGVHEAHFVLPQSGQ 476
            QG PR  PTF +L E + +L++EN + E  F + QS +
Sbjct: 1161 QGEPRERPTFPALVEILGDLLQENSLPEIPFNVSQSSE 1198


>sp|P30620|PSO2_YEAST DNA cross-link repair protein PSO2/SNM1
           OS=Saccharomyces cerevisiae GN=PSO2 PE=1 SV=1
          Length = 661

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -1

Query: 257 LHVIIVTVSFRTRTVAHYILPTSSPYIAEASSHVVVRFSISSLLKVGEADLSRSSD 90
           LH    T S R RT+  + +PTSS     +SS+   RFS S+  K  E  +    D
Sbjct: 31  LHKNTHTSSKRQRTLTEFNIPTSSNLPVRSSSYSFSRFSCSTSNKNTEPVIINDDD 86
tr_hit_id B8BCE0
Definition tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 26
Score (bit) 42.7
E-value 0.011
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956690|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_G10, 5'
         (530 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.011
tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subs...    40   0.096
tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.096
tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.096
tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized pr...    39   0.21 
tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medic...    39   0.21 
tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.37 
tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequen...    37   0.48 
tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.48 
tr|A2WYF6|A2WYF6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.48 
tr|B6TYG3|B6TYG3_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.62 
tr|A7PN08|A7PN08_VITVI Chromosome chr14 scaffold_21, whole genom...    35   1.8  
tr|Q1PDP3|Q1PDP3_ARATH Putative uncharacterized protein OS=Arabi...    35   2.4  
tr|A0MFL1|A0MFL1_ARATH Putative uncharacterized protein (Fragmen...    35   2.4  
tr|Q9SY85|Q9SY85_ARATH F14N23.31 OS=Arabidopsis thaliana PE=4 SV=1     35   3.1  
tr|Q8LPT2|Q8LPT2_ARATH At1g10410/F14N23_31 OS=Arabidopsis thalia...    35   3.1  
tr|Q7XNQ0|Q7XNQ0_ORYSJ OSJNBb0089B03.11 protein (Putative unchar...    35   3.1  
tr|Q0JDS7|Q0JDS7_ORYSJ Os04g0380200 protein OS=Oryza sativa subs...    35   3.1  
tr|A2XSL5|A2XSL5_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.1  
tr|A2FXJ6|A2FXJ6_TRIVA Putative uncharacterized protein OS=Trich...    35   3.1  
tr|Q9A2D3|Q9A2D3_CAUCR Glycosyl transferase family protein OS=Ca...    34   4.0  
tr|Q7URQ9|Q7URQ9_RHOBA Putative uncharacterized protein OS=Rhodo...    34   4.0  
tr|B8H6F1|B8H6F1_CAUCR Glycosyltransferase OS=Caulobacter cresce...    34   4.0  
tr|A7PLR2|A7PLR2_VITVI Chromosome chr14 scaffold_21, whole genom...    33   6.9  
tr|A5AQV3|A5AQV3_VITVI Putative uncharacterized protein OS=Vitis...    33   6.9  

>tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29876 PE=4 SV=1
          Length = 542

 Score = 42.7 bits (99), Expect = 0.011
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGD 332
           K + WFDS  I E DSDD+FKSVNGD
Sbjct: 94  KEDAWFDSVSILEDDSDDEFKSVNGD 119


>tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0577600 PE=4 SV=1
          Length = 565

 Score = 39.7 bits (91), Expect = 0.096
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGD 332
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38863 PE=4 SV=1
          Length = 566

 Score = 39.7 bits (91), Expect = 0.096
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGD 332
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035196 PE=4 SV=1
          Length = 543

 Score = 39.7 bits (91), Expect = 0.096
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGD 332
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 559

 Score = 39.3 bits (90), Expect = 0.13
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGD 332
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 90  QEEAWFDSVSILGSDSDEDFSSVNGD 115


>tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized
           protein At1g59650) (T30E16.22) OS=Arabidopsis thaliana
           GN=CW14 PE=1 SV=1
          Length = 492

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +3

Query: 258 NEVWFDSRLIFESDSDDDFKSVNGD 332
           +E WFDS L FE+D DDDF SV  D
Sbjct: 57  DEAWFDSNLAFETDCDDDFHSVQED 81


>tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 190

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQ-GAPRPTFSSLKERMEELVRE 431
           K E +FDS+   +SD +DDF SVNGD              G P    +S + R       
Sbjct: 66  KEEAFFDSKAWIDSDCEDDFYSVNGDFTPSRGNTPIHHAFGTPGVNKASSRNRTS----- 120

Query: 432 NGVHEAHFVLPQSGQTSPEEKKTLGQLF 515
                     P   ++SP++KK L +LF
Sbjct: 121 ----------PSPSESSPDKKKKLLELF 138


>tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 228

 Score = 37.7 bits (86), Expect = 0.37
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 141 AEAHNNMRGCLS----YVRRRSRKDIVGNXXXXXXXXXXXXMKNEVWFDSRLIFESDSDD 308
           AEA N   GC      +   +S+ D                 K+EV+F+SR   +SD +D
Sbjct: 25  AEAANEKGGCGGGDDDFADFKSKVDAEQQRAELNPKSPDSGSKDEVFFESRAWLDSDCED 84

Query: 309 DFKSVNGD 332
           DF SVNGD
Sbjct: 85  DFYSVNGD 92


>tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1793G04.5 PE=2 SV=1
          Length = 231

 Score = 37.4 bits (85), Expect = 0.48
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +3

Query: 255 KNEVWFDSRLIFESDSDDDFKSVNGD 332
           K+E++FDSR   +SD +DDF SVNGD
Sbjct: 66  KDEMFFDSRAWLDSDCEDDFYSVNGD 91


>tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001040 PE=4 SV=1
          Length = 535

 Score = 37.4 bits (85), Expect = 0.48
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +3

Query: 261 EVWFDSRLIFESDSDDDFKSVNGD 332
           EVWFD  ++FESD DDDF S+  D
Sbjct: 64  EVWFDPVMVFESDLDDDFYSIQED 87