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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956700
Clone id TST39A01NGRL0026_G20
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_G20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AATAAGCAGGACCTTGTTTAGTTGTCTGTCCATGCATGCAGCAGCTTGCTCTGCTTTGTA
AAACACATCTTTGAACCTCGCTCTCAAGTGTAATACTGGCCTTCCTTTTACAACTTCGAA
TGGTTCATTCTTGTTTCGAAAAAAAAAAGAAGAAACATCAAAGAAGCCTCCATTATAAAA
AAAAATTAACAGTCACTTTAGAGAATCAACCCACGCCTGCCATGTCGTCTTTGAGAGTTG
AAAAAAAGAACAGCTTTTCAATTTGCGTGCGGCGGAATGGCAAGAGCTGGATCAAAAAAA
GGCGTCTTTGTCCCACACTTTGCAAGTCTTCAAGTCCAGGTATGCTGATGATGAGCCTCG
CAAGGGAAGTGACATTCTTGTTGAAGCTATGGAGAGGGAAGGGGTAGT
■■Homology search results ■■ -
sp_hit_id P09342
Definition sp|P09342|ILVB1_TOBAC Acetolactate synthase 1, chloroplastic OS=Nicotiana tabacum
Align length 37
Score (bit) 50.4
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956700|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_G20, 5'
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P09342|ILVB1_TOBAC Acetolactate synthase 1, chloroplastic OS=...    50   3e-06
sp|P09114|ILVB2_TOBAC Acetolactate synthase 2, chloroplastic OS=...    50   3e-06
sp|P27819|ILVB3_BRANA Acetolactate synthase 3, chloroplastic OS=...    47   2e-05
sp|P27818|ILVB1_BRANA Acetolactate synthase 1, chloroplastic OS=...    47   3e-05
sp|P17597|ILVB_ARATH Acetolactate synthase, chloroplastic OS=Ara...    44   2e-04
sp|P14874|ILVB2_BRANA Acetolactate synthase 2, chloroplastic OS=...    41   0.002
sp|Q41769|ILVB2_MAIZE Acetolactate synthase 2, chloroplastic OS=...    35   0.11 
sp|Q6K2E8|ILVB1_ORYSJ Acetolactate synthase 1, chloroplastic OS=...    33   0.44 
sp|Q9VS50|ECO_DROME N-acetyltransferase eco OS=Drosophila melano...    33   0.57 
sp|Q41768|ILVB1_MAIZE Acetolactate synthase 1, chloroplastic OS=...    31   2.2  
sp|Q6P1G2|JHD1B_MOUSE JmjC domain-containing histone demethylati...    30   3.7  
sp|Q8NHM5|JHD1B_HUMAN JmjC domain-containing histone demethylati...    30   3.7  
sp|P29461|PTP2_YEAST Tyrosine-protein phosphatase 2 OS=Saccharom...    30   4.8  
sp|A8H993|MRAZ_SHEPA Protein mraZ OS=Shewanella pealeana (strain...    30   4.8  
sp|Q3ZC98|NUP85_BOVIN Nucleoporin NUP85 OS=Bos taurus GN=NUP85 P...    29   8.5  
sp|Q2NRB3|MLTC_SODGM Membrane-bound lytic murein transglycosylas...    29   8.5  

>sp|P09342|ILVB1_TOBAC Acetolactate synthase 1, chloroplastic
           OS=Nicotiana tabacum GN=ALS SURA PE=1 SV=1
          Length = 667

 Score = 50.4 bits (119), Expect = 3e-06
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 296 KKASLSHTLQVFKSRYADDEPRKGSDILVEAMEREGV 406
           +K S +   + F SR+A DEPRKGSD+LVEA+EREGV
Sbjct: 73  QKVSQTEKTETFVSRFAPDEPRKGSDVLVEALEREGV 109


>sp|P09114|ILVB2_TOBAC Acetolactate synthase 2, chloroplastic
           OS=Nicotiana tabacum GN=ALS SURB PE=1 SV=1
          Length = 664

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = +2

Query: 296 KKASLSHTLQVFKSRYADDEPRKGSDILVEAMEREGV 406
           +K S +   + F SR+A DEPRKGSD+LVEA+EREGV
Sbjct: 70  QKVSETQKAETFVSRFAPDEPRKGSDVLVEALEREGV 106


>sp|P27819|ILVB3_BRANA Acetolactate synthase 3, chloroplastic
           OS=Brassica napus PE=3 SV=1
          Length = 652

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 320 LQVFKSRYADDEPRKGSDILVEAMEREGV 406
           ++ F SRYA DEPRKG+DILVEA+ER+GV
Sbjct: 66  IKTFISRYAPDEPRKGADILVEALERQGV 94


>sp|P27818|ILVB1_BRANA Acetolactate synthase 1, chloroplastic
           OS=Brassica napus PE=3 SV=1
          Length = 655

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 21/28 (75%), Positives = 25/28 (89%)
 Frame = +2

Query: 323 QVFKSRYADDEPRKGSDILVEAMEREGV 406
           + F SRYA DEPRKG+DILVEA+ER+GV
Sbjct: 70  KTFVSRYAPDEPRKGADILVEALERQGV 97


>sp|P17597|ILVB_ARATH Acetolactate synthase, chloroplastic
           OS=Arabidopsis thaliana GN=CSR 1.2 PE=1 SV=1
          Length = 670

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +2

Query: 323 QVFKSRYADDEPRKGSDILVEAMEREGV 406
           + F SR+A D+PRKG+DILVEA+ER+GV
Sbjct: 85  ETFISRFAPDQPRKGADILVEALERQGV 112


>sp|P14874|ILVB2_BRANA Acetolactate synthase 2, chloroplastic
           OS=Brassica napus PE=3 SV=1
          Length = 637

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +2

Query: 296 KKASLSHTLQVFKSRYADDEPRKGSDILVEAMEREGV 406
           + AS       F S+YA + PR G+DILVEA+ER+GV
Sbjct: 52  RTASRRENPSTFSSKYAPNVPRSGADILVEALERQGV 88


>sp|Q41769|ILVB2_MAIZE Acetolactate synthase 2, chloroplastic OS=Zea
           mays GN=ALS2 PE=3 SV=1
          Length = 638

 Score = 35.0 bits (79), Expect = 0.11
 Identities = 16/22 (72%), Positives = 19/22 (86%)
 Frame = +2

Query: 341 YADDEPRKGSDILVEAMEREGV 406
           +  +EPRKGSDILVEA+ER GV
Sbjct: 59  WGPNEPRKGSDILVEALERCGV 80


>sp|Q6K2E8|ILVB1_ORYSJ Acetolactate synthase 1, chloroplastic
           OS=Oryza sativa subsp. japonica GN=ALS1 PE=2 SV=1
          Length = 644

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +2

Query: 353 EPRKGSDILVEAMEREGV 406
           EPRKG+DILVEA+ER GV
Sbjct: 69  EPRKGADILVEALERCGV 86


>sp|Q9VS50|ECO_DROME N-acetyltransferase eco OS=Drosophila
           melanogaster GN=eco PE=1 SV=1
          Length = 1052

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +3

Query: 87  SVILAFLLQLRMVHSCFEKKKKKHQRSLHYKKKLTVTLENQPTPAMSSLRVEKKNSFSIC 266
           S + A L++ +   S  EK KKKH  SL    ++  T   + +PA  S   ++K S S  
Sbjct: 186 SKVAAMLMKGQDSRSMLEKSKKKHNHSLKTTAQVHTTKPKKTSPAEESQSDDEKPSSSKN 245

Query: 267 VRRN 278
            R+N
Sbjct: 246 SRKN 249


>sp|Q41768|ILVB1_MAIZE Acetolactate synthase 1, chloroplastic OS=Zea
           mays GN=ALS1 PE=3 SV=1
          Length = 638

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 13/18 (72%), Positives = 17/18 (94%)
 Frame = +2

Query: 353 EPRKGSDILVEAMEREGV 406
           +PRKG+DILVE++ER GV
Sbjct: 63  DPRKGADILVESLERCGV 80
tr_hit_id A9RWH6
Definition tr|A9RWH6|A9RWH6_PHYPA Acetolactate synthase OS=Physcomitrella patens subsp. patens
Align length 36
Score (bit) 50.4
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956700|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_G20, 5'
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RWH6|A9RWH6_PHYPA Acetolactate synthase OS=Physcomitrella p...    50   4e-05
tr|A4S8I1|A4S8I1_OSTLU Acetolactate synthase OS=Ostreococcus luc...    50   4e-05
tr|Q7X9G4|Q7X9G4_9MAGN Acetolactate synthase OS=Papaver rhoeas G...    50   6e-05
tr|Q42767|Q42767_GOSHI Acetolactate synthase OS=Gossypium hirsut...    50   6e-05
tr|Q00U23|Q00U23_OSTTA Acetolactate synthase OS=Ostreococcus tau...    50   6e-05
tr|B8LK99|B8LK99_PICSI Putative uncharacterized protein OS=Picea...    50   6e-05
tr|A9S0R7|A9S0R7_PHYPA Acetolactate synthase OS=Physcomitrella p...    50   6e-05
tr|Q41716|Q41716_9ASTR Acetolactate synthase OS=Xanthium sp. PE=...    48   2e-04
tr|Q5VB49|Q5VB49_HELAN Acetolactate synthase OS=Helianthus annuu...    48   3e-04
tr|Q41717|Q41717_9ASTR Acetolactate synthase OS=Xanthium sp. PE=...    48   3e-04
tr|Q5VB48|Q5VB48_HELAN Acetolactate synthase OS=Helianthus annuu...    47   4e-04
tr|Q5VB47|Q5VB47_HELAN Acetolactate synthase OS=Helianthus annuu...    47   4e-04
tr|Q5VB46|Q5VB46_HELAN Acetolactate synthase OS=Helianthus annuu...    47   4e-04
tr|Q5VB45|Q5VB45_HELAN Acetolactate synthase OS=Helianthus annuu...    47   4e-04
tr|Q42768|Q42768_GOSHI Acetolactate synthase OS=Gossypium hirsut...    47   4e-04
tr|B5LAT2|B5LAT2_CAPAN Putative acetolactate synthase OS=Capsicu...    47   4e-04
tr|Q8L6E4|Q8L6E4_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6E3|Q8L6E3_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6E2|Q8L6E2_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6E1|Q8L6E1_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6E0|Q8L6E0_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6D9|Q8L6D9_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6D8|Q8L6D8_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6D7|Q8L6D7_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6D6|Q8L6D6_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6D5|Q8L6D5_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|Q8L6D4|Q8L6D4_RAPRA Acetolactate synthase (Fragment) OS=Rapha...    47   6e-04
tr|A7Q4W4|A7Q4W4_VITVI Acetolactate synthase OS=Vitis vinifera G...    47   6e-04
tr|Q5VB44|Q5VB44_HELAN Acetolactate synthase OS=Helianthus annuu...    46   8e-04
tr|Q5VB43|Q5VB43_HELAN Acetolactate synthase OS=Helianthus annuu...    46   8e-04

>tr|A9RWH6|A9RWH6_PHYPA Acetolactate synthase OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_120367 PE=3 SV=1
          Length = 618

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 25/36 (69%), Positives = 29/36 (80%)
 Frame = +2

Query: 299 KASLSHTLQVFKSRYADDEPRKGSDILVEAMEREGV 406
           K   + T + F SRYA+DEPRKGSDILVEA+EREGV
Sbjct: 25  KTLTAPTPKDFVSRYAEDEPRKGSDILVEALEREGV 60


>tr|A4S8I1|A4S8I1_OSTLU Acetolactate synthase OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_51596 PE=3 SV=1
          Length = 610

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +2

Query: 329 FKSRYADDEPRKGSDILVEAMEREGV 406
           F SR+ADDEPRKGSDILVEA+EREGV
Sbjct: 13  FASRFADDEPRKGSDILVEALEREGV 38


>tr|Q7X9G4|Q7X9G4_9MAGN Acetolactate synthase OS=Papaver rhoeas
           GN=als PE=2 SV=1
          Length = 662

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 25/38 (65%), Positives = 29/38 (76%), Gaps = 4/38 (10%)
 Frame = +2

Query: 305 SLSHTLQV----FKSRYADDEPRKGSDILVEAMEREGV 406
           S +HT  V    F SRY DDEPRKG+D+LVEA+EREGV
Sbjct: 67  STTHTTSVSPPPFVSRYKDDEPRKGADVLVEALEREGV 104


>tr|Q42767|Q42767_GOSHI Acetolactate synthase OS=Gossypium hirsutum
           GN=AHAS PE=3 SV=1
          Length = 659

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +2

Query: 329 FKSRYADDEPRKGSDILVEAMEREGV 406
           F SRYADDEPRKG+DILVEA+EREGV
Sbjct: 76  FISRYADDEPRKGADILVEALEREGV 101


>tr|Q00U23|Q00U23_OSTTA Acetolactate synthase OS=Ostreococcus tauri
           GN=Ot16g02270 PE=3 SV=1
          Length = 679

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 22/26 (84%), Positives = 26/26 (100%)
 Frame = +2

Query: 329 FKSRYADDEPRKGSDILVEAMEREGV 406
           F+SR+ADDEPRKG+DILVEA+EREGV
Sbjct: 81  FQSRFADDEPRKGADILVEALEREGV 106


>tr|B8LK99|B8LK99_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 669

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
 Frame = +2

Query: 275 EWQEL-----DQKKASLSHTLQVFKSRYADDEPRKGSDILVEAMEREGV 406
           EW E      D  + S+      F SRYAD EPRKG+D++VEA+EREGV
Sbjct: 65  EWSESAVELKDPSQTSVKSLPSSFTSRYADSEPRKGADVIVEALEREGV 113


>tr|A9S0R7|A9S0R7_PHYPA Acetolactate synthase OS=Physcomitrella
           patens subsp. patens GN=PHYPADRAFT_105543 PE=3 SV=1
          Length = 583

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = +2

Query: 335 SRYADDEPRKGSDILVEAMEREGV 406
           SRYADDEPRKGSDILVEA+EREGV
Sbjct: 2   SRYADDEPRKGSDILVEALEREGV 25


>tr|Q41716|Q41716_9ASTR Acetolactate synthase OS=Xanthium sp. PE=2
           SV=1
          Length = 648

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
 Frame = +2

Query: 287 LDQKKASLSHT---LQVFKSRYADDEPRKGSDILVEAMEREGV 406
           L   K +++H+    + F SRYA D+PRKG+D+LVEA+EREGV
Sbjct: 48  LSDSKPTITHSPLPTESFISRYAPDQPRKGADVLVEALEREGV 90


>tr|Q5VB49|Q5VB49_HELAN Acetolactate synthase OS=Helianthus annuus
           GN=AHAS1 PE=3 SV=1
          Length = 655

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = +2

Query: 320 LQVFKSRYADDEPRKGSDILVEAMEREGV 406
           +Q F SRYA D+PRKG+D+LVEA+EREGV
Sbjct: 69  VQPFVSRYAPDQPRKGADVLVEALEREGV 97


>tr|Q41717|Q41717_9ASTR Acetolactate synthase OS=Xanthium sp. PE=2
           SV=1
          Length = 648

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 3/43 (6%)
 Frame = +2

Query: 287 LDQKKASLSHT---LQVFKSRYADDEPRKGSDILVEAMEREGV 406
           L   K +++H+    + F SRYA D+PRKG+D+LVEA+EREGV
Sbjct: 48  LSDSKPTITHSPLPTKSFISRYAPDQPRKGADVLVEALEREGV 90