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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956706
Clone id TST39A01NGRL0026_H02
Library
Length 547
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_H02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCTGTTTTTCGGCATCTTCAGAGTCGACCAAAAGGCTCAGAAGGAAGCGAGTCCAGTGTT
TGCAAGACATCTTAATTCTCCTCCTTTGCCACTTAGCTCCATGGATTGCACATTTGCGGC
GCAGGCCTCTCCGCAAACAGCTGCGGCTCCCCTAGCAGCCCTCTCACACAAGTCTTCTGT
TCAGATCCCGCGGGGGGCTCTCCGCTCAAACTTCTGTGTGCAGACAGGTCTTTTAAAGTT
GGATATTCAGAGAGGGATAAAGTCAAGGTTGAGGAGAAACAGGGGCAGTGTCAAGTTGGC
AGTTGTTAGAGCAAGTGGTGATACTCAAGATAGTGGGTCTCCGATATCTCCGTTCCAGCC
AGAGTCTCCTACCGGTCAGTACTTGGCACAGCTTCTTCAAAGCCATCCCCATCTTGTTCC
TGCTGCTGTTGAGCAAGAGCTTGAGAAGCTTGCTGAGAATCGTACTTTGCAGGATTCTTC
CACTGAGCCTAGCTCAAAGGGTTCCGAGCTTGTCCTCTACAGACGGATTGCTGAGCTCAA
AGAGCAG
■■Homology search results ■■ -
sp_hit_id Q8BI22
Definition sp|Q8BI22|CN145_MOUSE Uncharacterized protein C14orf145 homolog OS=Mus musculus
Align length 112
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956706|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H02, 5'
         (547 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BI22|CN145_MOUSE Uncharacterized protein C14orf145 homolog ...    32   2.6  
sp|P33653|YBL1_STRCI Uncharacterized 26.1 kDa protein in blaB 3'...    31   4.5  
sp|Q8IZU2|WDR17_HUMAN WD repeat-containing protein 17 OS=Homo sa...    30   5.9  
sp|Q32KP0|CI024_BOVIN Uncharacterized protein C9orf24 homolog OS...    30   5.9  
sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila mela...    30   7.6  
sp|Q1LIN6|SECA_RALME Protein translocase subunit secA OS=Ralston...    30   7.7  

>sp|Q8BI22|CN145_MOUSE Uncharacterized protein C14orf145 homolog
           OS=Mus musculus PE=2 SV=2
          Length = 1102

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
 Frame = +2

Query: 227 GLLKLDIQRGIKS----RLRRNRGSVKLAVVRASGDTQDSGSPIS--PFQPESPTGQYLA 388
           G LK D+++ I      RLRR+ G   ++V   S    D G+      F P SP   Y  
Sbjct: 77  GQLKEDLEQSINQLRSQRLRRSSGGRSVSVTSLSASDLDGGAVTENLRFAPTSPLKDYDL 136

Query: 389 QLLQSHPHLVPAAVEQELEKLAE----NRTLQDSSTEPSSKGSEL--VLYRR 526
           Q ++ +          E + + +    +++L+D S+E    G +L   L+RR
Sbjct: 137 QGIKRNRFRTGVRFVSETDDMVQLHTFHQSLRDLSSEQVRLGDDLNRELFRR 188


>sp|P33653|YBL1_STRCI Uncharacterized 26.1 kDa protein in blaB
           3'region OS=Streptomyces cacaoi PE=4 SV=1
          Length = 242

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +2

Query: 245 IQRGIKSRLRRNRGSVKLAVVRASGDTQDSGSPISPFQPESPTGQYLAQLLQSHPHL 415
           I+ G +  LR   G V L VV  +   QD      PF  +   G  + +L+  HPH+
Sbjct: 83  IEAGDRGELREELGDVLLQVVFHARIAQDDAD--EPFAIDDVAGTLVTKLVHRHPHV 137


>sp|Q8IZU2|WDR17_HUMAN WD repeat-containing protein 17 OS=Homo sapiens
            GN=WDR17 PE=2 SV=2
          Length = 1322

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
 Frame = +2

Query: 377  QYLAQLLQSHPHLVPAAVEQELEKL--------AENRTLQDSSTEPSSKGSELVLYRRIA 532
            +Y +QLL+     VP  +E   E+L        + NR+L+DS   P S    ++    + 
Sbjct: 1186 EYTSQLLKRREVSVPLKIEYLSEELDAWRACTQSTNRSLEDSPYTPPSDSQRMIYATLLK 1245

Query: 533  ELKEQ 547
             LKE+
Sbjct: 1246 RLKEE 1250


>sp|Q32KP0|CI024_BOVIN Uncharacterized protein C9orf24 homolog
           OS=Bos taurus PE=2 SV=1
          Length = 304

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 337 PTILSITTCSNNCQLDTAPVSPQP*LYPSLNIQ 239
           PT+ S++ C +   +  A ++PQP  YP  N++
Sbjct: 238 PTVRSVSPCEHRSGMQCAVITPQPSYYPCPNLR 270


>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila
           melanogaster GN=LanB2 PE=1 SV=2
          Length = 1639

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 224 SAHRSLSGEPPAGSEQKTCVRGLLGEPQLFAERPAP 117
           +AHR  +G P    EQ TC  G LG+   F E  AP
Sbjct: 694 TAHRGAAGHPATWIEQCTCPEGYLGQ---FCESCAP 726


>sp|Q1LIN6|SECA_RALME Protein translocase subunit secA OS=Ralstonia
           metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
           GN=secA PE=3 SV=1
          Length = 930

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
 Frame = +2

Query: 299 AVVRASGDTQDSGSPISPFQPESPTGQYLAQLLQSH--PHLV----PAAVEQELEKLAEN 460
           AVVR   D  D G P+        T +YL+ LL     PH V      A E E+   A  
Sbjct: 440 AVVRDIRDCYDRGQPVLVGTTSIETSEYLSDLLNKEKLPHQVLNAKQHAREAEIVAQAGR 499

Query: 461 RTLQDSSTEPSSKGSELVL 517
             +   +T  + +G+++VL
Sbjct: 500 PKMVTIATNMAGRGTDIVL 518
tr_hit_id B8LPW2
Definition tr|B8LPW2|B8LPW2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 92
Score (bit) 99.0
E-value 1.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956706|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H02, 5'
         (547 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LPW2|B8LPW2_PICSI Putative uncharacterized protein OS=Picea...    99   1e-19
tr|A7QTZ7|A7QTZ7_VITVI Chromosome undetermined scaffold_174, who...    99   2e-19
tr|A9PIE4|A9PIE4_POPTR Putative uncharacterized protein OS=Popul...    92   2e-17
tr|Q9LVJ0|Q9LVJ0_ARATH Gb|AAF02142.1 (Putative uncharacterized p...    89   2e-16
tr|Q8W4L9|Q8W4L9_ARATH Putative uncharacterized protein At3g1780...    89   2e-16
tr|Q0WNF6|Q0WNF6_ARATH Putative uncharacterized protein At3g1780...    89   2e-16
tr|A9PF86|A9PF86_POPTR Putative uncharacterized protein OS=Popul...    88   3e-16
tr|Q9LP80|Q9LP80_ARATH T1N15.6 (Putative uncharacterized protein...    86   1e-15
tr|Q2V4I1|Q2V4I1_ARATH Uncharacterized protein At1g48450.2 OS=Ar...    86   1e-15
tr|Q7X9D6|Q7X9D6_MARQU ABRH7 (Fragment) OS=Marsilea quadrifolia ...    86   2e-15
tr|A7PSL3|A7PSL3_VITVI Chromosome chr6 scaffold_28, whole genome...    81   3e-14
tr|B6TEU7|B6TEU7_MAIZE Putative uncharacterized protein OS=Zea m...    79   2e-13
tr|A7PC12|A7PC12_VITVI Chromosome chr2 scaffold_11, whole genome...    79   2e-13
tr|A5BNG8|A5BNG8_VITVI Putative uncharacterized protein OS=Vitis...    78   3e-13
tr|B7FJF5|B7FJF5_MEDTR Putative uncharacterized protein OS=Medic...    76   1e-12
tr|Q10DW0|Q10DW0_ORYSJ Os03g0717900 protein OS=Oryza sativa subs...    75   2e-12
tr|B4G0A9|B4G0A9_MAIZE Putative uncharacterized protein OS=Zea m...    75   2e-12
tr|A5BZ18|A5BZ18_VITVI Putative uncharacterized protein OS=Vitis...    75   2e-12
tr|A3AM41|A3AM41_ORYSJ Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|A2XLF0|A2XLF0_ORYSI Putative uncharacterized protein OS=Oryza...    75   2e-12
tr|B6UFZ7|B6UFZ7_MAIZE Putative uncharacterized protein OS=Zea m...    72   2e-11
tr|Q7X6P4|Q7X6P4_ORYSA OSJNBa0006A01.21 protein (OSJNba0093F12.3...    71   3e-11
tr|Q0JAJ2|Q0JAJ2_ORYSJ Os04g0595100 protein OS=Oryza sativa subs...    71   3e-11
tr|B8ATK2|B8ATK2_ORYSI Putative uncharacterized protein OS=Oryza...    71   3e-11
tr|Q10DV9|Q10DV9_ORYSJ cDNA clone:001-023-C09, full insert seque...    68   3e-10
tr|Q9FVR1|Q9FVR1_ARATH Putative uncharacterized protein F3C3.6 (...    67   8e-10
tr|A4S3L6|A4S3L6_OSTLU Predicted protein OS=Ostreococcus lucimar...    53   1e-05
tr|A8IKK2|A8IKK2_CHLRE Predicted protein OS=Chlamydomonas reinha...    52   3e-05
tr|Q010E1|Q010E1_OSTTA Homology to unknown gene (Fragment) OS=Os...    50   1e-04
tr|B6TD75|B6TD75_MAIZE Putative uncharacterized protein OS=Zea m...    50   1e-04

>tr|B8LPW2|B8LPW2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 434

 Score = 99.0 bits (245), Expect = 1e-19
 Identities = 52/92 (56%), Positives = 65/92 (70%)
 Frame = +2

Query: 266 RLRRNRGSVKLAVVRASGDTQDSGSPISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELE 445
           R RRN G      VRA+G+  +S  PI+P Q ESPTGQ+L+QLL+ HPHL+PAAVEQ+LE
Sbjct: 74  RSRRNFG------VRAAGNYDESSKPIAPLQLESPTGQFLSQLLKDHPHLLPAAVEQQLE 127

Query: 446 KLAENRTLQDSSTEPSSKGSELVLYRRIAELK 541
           +L  +R        PSS  +ELVLYRRIAE+K
Sbjct: 128 RLVADRDAAAQQDPPSSTSTELVLYRRIAEVK 159


>tr|A7QTZ7|A7QTZ7_VITVI Chromosome undetermined scaffold_174, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006608001 PE=4 SV=1
          Length = 362

 Score = 98.6 bits (244), Expect = 2e-19
 Identities = 51/88 (57%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
 Frame = +2

Query: 284 GSVKLAVVRASGDTQDSGS--PISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAE 457
           G  K  +VRAS     SGS  PI+P Q ESP GQ+L+Q+L SHPHLVPAAVEQ+LE+L  
Sbjct: 4   GCKKCTIVRASASADSSGSAAPIAPLQLESPIGQFLSQILISHPHLVPAAVEQQLEQLQT 63

Query: 458 NRTLQDSSTEPSSKGSELVLYRRIAELK 541
           +R  ++   E S+ G+ELVLYRRIAE+K
Sbjct: 64  DRDAEEHKEESSASGTELVLYRRIAEVK 91


>tr|A9PIE4|A9PIE4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 417

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 48/90 (53%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
 Frame = +2

Query: 284 GSVKLAVVRASGDTQDSGS----PISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKL 451
           GS +   VRAS  +    S    PI+P Q ESP GQ+L+Q+L SHPHLVPAAVEQ+LE+L
Sbjct: 59  GSRRCMAVRASSSSSSDSSGSIVPIAPLQLESPIGQFLSQILVSHPHLVPAAVEQQLEQL 118

Query: 452 AENRTLQDSSTEPSSKGSELVLYRRIAELK 541
             +R  +    +PS+ G++LVLYRRIAE K
Sbjct: 119 QTDRDSEKQKEDPSATGTDLVLYRRIAEAK 148


>tr|Q9LVJ0|Q9LVJ0_ARATH Gb|AAF02142.1 (Putative uncharacterized
           protein At3g17800) OS=Arabidopsis thaliana GN=At3g17800
           PE=2 SV=1
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 6/87 (6%)
 Frame = +2

Query: 302 VVRASGDTQDSGS-----PISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAENRT 466
           VVRAS  + D+ S     PI+P Q +SP GQ+L+Q+L SHPHLVPAAVEQ+LE+L  +R 
Sbjct: 73  VVRASSASNDASSGSSPKPIAPLQLQSPAGQFLSQILVSHPHLVPAAVEQQLEQLQTDRD 132

Query: 467 LQDSSTEPSS-KGSELVLYRRIAELKE 544
            Q  + + +S  G+++VLYRRIAELKE
Sbjct: 133 SQGQNKDSASVPGTDIVLYRRIAELKE 159


>tr|Q8W4L9|Q8W4L9_ARATH Putative uncharacterized protein At3g17800;
           MEB5.2 (Putative uncharacterized protein At3g17800)
           OS=Arabidopsis thaliana GN=At3g17800/MEB5.2 PE=2 SV=1
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 6/87 (6%)
 Frame = +2

Query: 302 VVRASGDTQDSGS-----PISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAENRT 466
           VVRAS  + D+ S     PI+P Q +SP GQ+L+Q+L SHPHLVPAAVEQ+LE+L  +R 
Sbjct: 73  VVRASSASNDASSGSSPKPIAPLQLQSPAGQFLSQILVSHPHLVPAAVEQQLEQLQTDRD 132

Query: 467 LQDSSTEPSS-KGSELVLYRRIAELKE 544
            Q  + + +S  G+++VLYRRIAELKE
Sbjct: 133 SQGQNKDSASVPGTDIVLYRRIAELKE 159


>tr|Q0WNF6|Q0WNF6_ARATH Putative uncharacterized protein At3g17800
           OS=Arabidopsis thaliana GN=At3g17800 PE=2 SV=1
          Length = 421

 Score = 88.6 bits (218), Expect = 2e-16
 Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 6/87 (6%)
 Frame = +2

Query: 302 VVRASGDTQDSGS-----PISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAENRT 466
           VVRAS  + D+ S     PI+P Q +SP GQ+L+Q+L SHPHLVPAAVEQ+LE+L  +R 
Sbjct: 73  VVRASSASNDASSGSSPKPIAPLQLQSPAGQFLSQILVSHPHLVPAAVEQQLEQLQTDRD 132

Query: 467 LQDSSTEPSS-KGSELVLYRRIAELKE 544
            Q  + + +S  G+++VLYRRIAELKE
Sbjct: 133 SQGQNKDSASVPGTDIVLYRRIAELKE 159


>tr|A9PF86|A9PF86_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 401

 Score = 87.8 bits (216), Expect = 3e-16
 Identities = 43/81 (53%), Positives = 60/81 (74%)
 Frame = +2

Query: 299 AVVRASGDTQDSGSPISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAENRTLQDS 478
           A + +S D+  S + I+P Q ESP GQ+L+Q+L SHPHLVPAAVEQ+LE+L  +R  +  
Sbjct: 68  ASLSSSSDSSGSIASIAPLQLESPVGQFLSQILISHPHLVPAAVEQQLEQLQTDRDAEKQ 127

Query: 479 STEPSSKGSELVLYRRIAELK 541
             EPS+  ++LVLYR+IAE+K
Sbjct: 128 KEEPSATSTDLVLYRKIAEVK 148


>tr|Q9LP80|Q9LP80_ARATH T1N15.6 (Putative uncharacterized protein
           At1g48450) (At1g48450/T1N15_5) OS=Arabidopsis thaliana
           GN=At1g48450 PE=2 SV=1
          Length = 423

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 45/83 (54%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
 Frame = +2

Query: 302 VVRASGDTQDSGSPISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAENRTLQDSS 481
           VV+AS     S   I+P Q +SP GQ+L+Q+L SHPHLVPAAVEQ+LE+L  +R  ++ S
Sbjct: 69  VVKASASGDASTESIAPLQLKSPVGQFLSQILVSHPHLVPAAVEQQLEQLQIDRDAEEQS 128

Query: 482 TEPSS-KGSELVLYRRIAELKEQ 547
            + SS  G+++VLYRRIAE+KE+
Sbjct: 129 KDASSVLGTDIVLYRRIAEVKEK 151


>tr|Q2V4I1|Q2V4I1_ARATH Uncharacterized protein At1g48450.2
           OS=Arabidopsis thaliana GN=At1g48450 PE=4 SV=1
          Length = 342

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 45/83 (54%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
 Frame = +2

Query: 302 VVRASGDTQDSGSPISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAENRTLQDSS 481
           VV+AS     S   I+P Q +SP GQ+L+Q+L SHPHLVPAAVEQ+LE+L  +R  ++ S
Sbjct: 69  VVKASASGDASTESIAPLQLKSPVGQFLSQILVSHPHLVPAAVEQQLEQLQIDRDAEEQS 128

Query: 482 TEPSS-KGSELVLYRRIAELKEQ 547
            + SS  G+++VLYRRIAE+KE+
Sbjct: 129 KDASSVLGTDIVLYRRIAEVKEK 151


>tr|Q7X9D6|Q7X9D6_MARQU ABRH7 (Fragment) OS=Marsilea quadrifolia
           PE=2 SV=1
          Length = 176

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 43/83 (51%), Positives = 56/83 (67%)
 Frame = +2

Query: 278 NRGSVKLAVVRASGDTQDSGSPISPFQPESPTGQYLAQLLQSHPHLVPAAVEQELEKLAE 457
           NR   +L +  A      S +P++P  PESP+GQ+L +LLQSHPHLVPAA EQ+LE LAE
Sbjct: 94  NRRKTRLTI-NAEMTASASTTPLAPLIPESPSGQFLTELLQSHPHLVPAAAEQQLETLAE 152

Query: 458 NRTLQDSSTEPSSKGSELVLYRR 526
            R    S  +P+  G+ELVLY+R
Sbjct: 153 AREAASSQEQPTPDGNELVLYKR 175