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NBDC - LSDB Archive
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DK956714
Clone id TST39A01NGRL0026_H10
Library
Length 554
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_H10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGCGATTGCTACCCCCGTGTGCAGCAGAAGACGTAAGGGCAATGGCTTCTACGAGCA
TGGCCTGCTCACACCAGCTGGTGCCTGCGCTGTCAGTTCCTTTACCCAAATCCAGATTTC
TGGGCGCTCCCTCCTTCGCACCTGCCCTCGCCTGCAGCAATGGTTCTCGTCTCACCTGCA
TGGCCTCTAGCGAGTGGCTGCCTGGCCAACCCCGCCCTGCCCATCTGGATGGCTCCTCCC
CTGGCGACTTTGGGTTCGACCCCCTCGGGCTCGCTGAGGTACCCGAAAATTTCGCTCGCT
TCAAGGAGTCTGAGCTCATTCACTGCAGATGGGCGATGCTAGCTGTGCCAGGAATTCTGT
TGCCAGAAGCTCTGGGGCTGGGTAACTGGGTGGATGCGCAGAAATGGGCAGCTACGCCAG
GCGGGCATGCCACCTATTTGGGCAATCCTGTACCCTGGGGCAACCTGTCCTTCATTATTG
CCTTCGAATTTTTTGCCATTTGCTTTTTCAGAGGCTTTAAGAAATGAGGAGAATGACCCT
GAGAGAAGGAAAGG
■■Homology search results ■■ -
sp_hit_id Q9SDM1
Definition sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare
Align length 143
Score (bit) 192.0
E-value 1.0e-48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956714|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H10, 5'
         (554 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...   192   1e-48
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...   174   3e-43
sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloropla...    91   4e-18
sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chl...    86   1e-16
sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl...    85   3e-16
sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloropl...    80   5e-15
sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplas...    78   3e-14
sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplas...    77   4e-14
sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplas...    77   7e-14
sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 memb...    74   4e-13
sp|P08975|LH15_EUGGR Light-harvesting complex I LH35 proteins (F...    74   6e-13
sp|P13851|CB21_SINAL Chlorophyll a-b binding protein 1, chloropl...    74   6e-13
sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, c...    73   8e-13
sp|P12333|CB2A_SPIOL Chlorophyll a-b binding protein, chloroplas...    73   8e-13
sp|P27497|CB29_MAIZE Chlorophyll a-b binding protein M9, chlorop...    73   8e-13
sp|P12062|CB26_PETSP Chlorophyll a-b binding protein 37, chlorop...    72   1e-12
sp|P14279|CB25_SOLLC Chlorophyll a-b binding protein 5, chloropl...    72   1e-12
sp|P14278|CB24_SOLLC Chlorophyll a-b binding protein 4, chloropl...    72   1e-12
sp|P27494|CB23_TOBAC Chlorophyll a-b binding protein 36, chlorop...    72   1e-12
sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop...    71   3e-12
sp|P07370|CB2B_SOLLC Chlorophyll a-b binding protein 1B, chlorop...    71   3e-12
sp|P27491|CB27_TOBAC Chlorophyll a-b binding protein 7, chloropl...    71   3e-12
sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor...    71   3e-12
sp|P27496|CB25_TOBAC Chlorophyll a-b binding protein 50, chlorop...    71   3e-12
sp|P12470|CB25_NICPL Chlorophyll a-b binding protein E, chloropl...    71   3e-12
sp|P27495|CB24_TOBAC Chlorophyll a-b binding protein 40, chlorop...    71   3e-12
sp|P27493|CB22_TOBAC Chlorophyll a-b binding protein 21, chlorop...    71   3e-12
sp|P07371|CB22_PEA Chlorophyll a-b binding protein AB80, chlorop...    71   3e-12
sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chlorop...    71   3e-12
sp|P27518|CB21_GOSHI Chlorophyll a-b binding protein 151, chloro...    71   3e-12

>sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21,
           chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1
          Length = 245

 Score =  192 bits (487), Expect = 1e-48
 Identities = 97/143 (67%), Positives = 108/143 (75%), Gaps = 2/143 (1%)
 Frame = +3

Query: 45  MASTS--MACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRP 218
           MAS+S   +CS   VP+L  P  +S   G P  A A   +   R+T   S+EW PGQPRP
Sbjct: 1   MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYA---TTSGRVTM--SAEWFPGQPRP 55

Query: 219 AHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDA 398
           AHLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAML VPG+L+PEALGLGNWV A
Sbjct: 56  AHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKA 115

Query: 399 QKWAATPGGHATYLGNPVPWGNL 467
           Q+WAA P G ATYLGNPVPWGNL
Sbjct: 116 QEWAALPDGQATYLGNPVPWGNL 138



 Score = 34.3 bits (77), Expect = 0.42
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = +1

Query: 403 NGQLRQAGMPPIWAILYPGATCPSLLPSNFLPFAFSEALRNEENDPERRK 552
           +GQ    G P  W  L      P++L   FL  AF+E  R  E DPE++K
Sbjct: 123 DGQATYLGNPVPWGNL------PTILAIEFLAIAFAEQQRTMEKDPEKKK 166



 Score = 30.8 bits (68), Expect = 4.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 255 FDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEA 371
           FDPLG ++ P  F   K  E+ + R AMLA  G  + ++
Sbjct: 172 FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQS 210


>sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A,
           chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
          Length = 246

 Score =  174 bits (441), Expect = 3e-43
 Identities = 83/140 (59%), Positives = 99/140 (70%)
 Frame = +3

Query: 48  ASTSMACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPAHL 227
           ++T M+C    V    +   KS+F  A    P    +         S++W+PGQPRP++L
Sbjct: 3   SNTLMSCGIPAVCPSFLSSTKSKFAAA---MPVYVGATNFMSRFSMSADWMPGQPRPSYL 59

Query: 228 DGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQKW 407
           DGS+PGDFGFD LGL EVP N  R+KESELIHCRWAMLAVPGI++PEALGLGNWV AQ+W
Sbjct: 60  DGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEW 119

Query: 408 AATPGGHATYLGNPVPWGNL 467
           AA PGG ATYLG PVPWG L
Sbjct: 120 AAIPGGQATYLGQPVPWGTL 139



 Score = 33.5 bits (75), Expect = 0.71
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 255 FDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLG 383
           FDPLG ++ P  F   K  E+ + R A+LA+ G  + ++  LG
Sbjct: 173 FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLG 215


>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4,
           chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
          Length = 252

 Score = 90.9 bits (224), Expect = 4e-18
 Identities = 51/110 (46%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
 Frame = +3

Query: 108 KSRFLGAPS--------FAPALACSNGSRLTCMASSEWLPGQPRPAHLDGSSPGDFGFDP 263
           KSRFLG  S        F P     + S        EWLPG   P +L GS PGD GFDP
Sbjct: 19  KSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDP 78

Query: 264 LGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQKWAA 413
           LGLAE PEN   F ++EL++ RWAML V G+LLPE       ++  KW A
Sbjct: 79  LGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA 128


>sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20,
           chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20
           PE=1 SV=1
          Length = 231

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 44/99 (44%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
 Frame = +3

Query: 141 PALACSNGSRLT-----CMASSEWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFK 305
           P+ A S   R T       A   WLPG   PA+LDGS  GD GFDPL LAE PE+   F 
Sbjct: 13  PSPAASGSPRSTRRDVAVQAKGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFV 72

Query: 306 ESELIHCRWAMLAVPGILLPEALGLGNWVDAQKWAATPG 422
           ++++++ RWAML V G+L+PE L     ++A +W   PG
Sbjct: 73  QADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPG 111


>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
          Length = 270

 Score = 84.7 bits (208), Expect = 3e-16
 Identities = 49/135 (36%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
 Frame = +3

Query: 63  ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRL----------------TCMASSE 194
           AC+   + A++   P SR  G+       +   G RL                 C+A+  
Sbjct: 4   ACASSTIAAVAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADP 63

Query: 195 ----WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILL 362
               W PG   P  LDGS PGDFGFDPLGLA  PE+    +++EL+HCRWAML   GI +
Sbjct: 64  DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFI 123

Query: 363 PEALGLGNWVDAQKW 407
           PE L     ++   W
Sbjct: 124 PELLTKIGILNTPSW 138


>sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4,
           chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
          Length = 251

 Score = 80.5 bits (197), Expect = 5e-15
 Identities = 41/77 (53%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
 Frame = +3

Query: 192 EWLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEA 371
           EWLPG   P +L GS  GD GFDPLGLAE PEN   F ++EL++ RWAML V G+LLPE 
Sbjct: 56  EWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 115

Query: 372 ------LGLGNWVDAQK 404
                 + +  W DA K
Sbjct: 116 FTKIGIINVPEWYDAGK 132


>sp|P04784|CB21_WHEAT Chlorophyll a-b binding protein, chloroplastic
           OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1
          Length = 266

 Score = 77.8 bits (190), Expect = 3e-14
 Identities = 54/154 (35%), Positives = 75/154 (48%), Gaps = 19/154 (12%)
 Frame = +3

Query: 45  MASTSMACSHQLVPALSVP-LPKSRFLGAPSFAPALACSNGSRLTCMASSEW-------- 197
           MA+T+M+ S       +V  LP S  +G          +   +++  +SS W        
Sbjct: 1   MAATTMSLSSSSFAGKAVKNLPSSALIGDARVNMRKTAAKAKQVS--SSSPWYGSDRVLY 58

Query: 198 ---LPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPE 368
              L G+P P++L G  PGD+G+D  GL+  PE FA+ +E E+IHCRWAML   G + PE
Sbjct: 59  LGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 117

Query: 369 AL-------GLGNWVDAQKWAATPGGHATYLGNP 449
            L       G   W  A     + GG   YLGNP
Sbjct: 118 LLARNGVKFGEAGWFKAGSQIFSDGG-LDYLGNP 150



 Score = 38.9 bits (89), Expect = 0.017
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
 Frame = +3

Query: 117 FLGAPSF--APALACSNGSRLTCMASSEW--LPGQPRPAHLDGSSPGDFGFDPLGLAEVP 284
           +LG PS   A +L      ++  M + E   + G P    +D   PG   FDPLGLAE P
Sbjct: 146 YLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGG-SFDPLGLAERP 204

Query: 285 ENFARFKESELIHCRWAMLAVPGILLPEAL-GLGNWVDAQKWAATPGGHATYL 440
           + FA  K  E+ + R AM ++ G  +   + G G   D     A P  +  +L
Sbjct: 205 QAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWL 257


>sp|P06671|CB22_MAIZE Chlorophyll a-b binding protein, chloroplastic
           OS=Zea mays PE=2 SV=1
          Length = 265

 Score = 77.4 bits (189), Expect = 4e-14
 Identities = 55/153 (35%), Positives = 73/153 (47%), Gaps = 18/153 (11%)
 Frame = +3

Query: 45  MASTSMACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEW--------- 197
           MAS++MA S       +V +P S F  A       A    ++    + S W         
Sbjct: 1   MASSTMALSSTAFAGKAVNVPSSSFGEARVTMRKTAAK--AKPAAASGSPWYGPDRVLYL 58

Query: 198 --LPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEA 371
             L G+P P++L G  PGD+G+D  GL+  PE FA+ +E E+IHCRWAML   G + PE 
Sbjct: 59  GPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 117

Query: 372 L-------GLGNWVDAQKWAATPGGHATYLGNP 449
           L       G   W  A     + GG   YLGNP
Sbjct: 118 LARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNP 149



 Score = 37.4 bits (85), Expect = 0.049
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +3

Query: 117 FLGAPSF--APALACSNGSRLTCMASSEW--LPGQPRPAHLDGSSPGDFGFDPLGLAEVP 284
           +LG PS   A ++      ++  M + E   + G P    +D   PG   FDPLGLA+ P
Sbjct: 145 YLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGG-SFDPLGLADDP 203

Query: 285 ENFARFKESELIHCRWAMLAVPGILL 362
           E F   K  EL   R AML++ G  +
Sbjct: 204 EAFGELKVKELKKGRLAMLSMFGFFV 229


>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic
           OS=Petunia hybrida PE=2 SV=1
          Length = 270

 Score = 76.6 bits (187), Expect = 7e-14
 Identities = 48/137 (35%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
 Frame = +3

Query: 21  CAAEDVRAMASTSMACSHQLVPALSVPLPKSRFLGAPSFAPA-LACSNGSRLTCMASSE- 194
           CA+  + A+A +S +          V   K+ FLG      +      GSR   +++   
Sbjct: 5   CASSTIAAVAFSSPSSQKN---GSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAA 61

Query: 195 ------WLPGQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGI 356
                 W PG   P  LDGS PGDFGFDPLGL   PE+     ++EL+H RWAML   GI
Sbjct: 62  DPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGI 121

Query: 357 LLPEALGLGNWVDAQKW 407
            +PE L     ++   W
Sbjct: 122 FIPEFLTKIGVLNTPSW 138


>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member
           1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1
          Length = 274

 Score = 74.3 bits (181), Expect = 4e-13
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 7/89 (7%)
 Frame = +3

Query: 204 GQPRPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEAL--- 374
           G+P P++L G  PGD+G+D  GL+  PENFA+ +E E+IHCRWAML   G + PE L   
Sbjct: 72  GEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARN 130

Query: 375 ----GLGNWVDAQKWAATPGGHATYLGNP 449
               G   W  A     + GG   YLGNP
Sbjct: 131 GVKFGEAVWFKAGAQIFSEGG-LDYLGNP 158



 Score = 37.4 bits (85), Expect = 0.049
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
 Frame = +3

Query: 117 FLGAPSF--APALACSNGSRLTCMASSEW--LPGQPRPAHLDGSSPGDFGFDPLGLAEVP 284
           +LG PS   A ++      ++  M + E   + G P     D   PG   FDPLGLAE P
Sbjct: 154 YLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGG-SFDPLGLAEDP 212

Query: 285 ENFARFKESELIHCRWAMLAVPGILL 362
           E FA  K  E+ + R AM ++ G  +
Sbjct: 213 EAFAELKVKEIKNGRLAMFSMFGFFV 238
tr_hit_id A9T399
Definition tr|A9T399|A9T399_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 141
Score (bit) 198.0
E-value 2.0e-49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956714|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H10, 5'
         (554 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T399|A9T399_PHYPA Predicted protein OS=Physcomitrella paten...   198   2e-49
tr|A9NRY9|A9NRY9_PICSI Putative uncharacterized protein OS=Picea...   192   8e-48
tr|B6SSN3|B6SSN3_MAIZE Chlorophyll a-b binding protein 6A OS=Zea...   190   4e-47
tr|B4XGT7|B4XGT7_9POAL Chloroplast chlorophyll a/b binding prote...   189   7e-47
tr|A9NS16|A9NS16_PICSI Putative uncharacterized protein OS=Picea...   189   7e-47
tr|A9P266|A9P266_PICSI Putative uncharacterized protein OS=Picea...   189   8e-47
tr|Q9ZSU0|Q9ZSU0_ORYSA Chlorophyll a/b-binding protein OS=Oryza ...   189   1e-46
tr|Q5ZA98|Q5ZA98_ORYSJ Os06g0320500 protein OS=Oryza sativa subs...   189   1e-46
tr|A2YCB9|A2YCB9_ORYSI Putative uncharacterized protein OS=Oryza...   189   1e-46
tr|B4FZL4|B4FZL4_MAIZE Chlorophyll a-b binding protein 6A OS=Zea...   187   2e-46
tr|Q6V8T3|Q6V8T3_MALDO Chlorophyll a/b-binding protein type I (F...   183   6e-45
tr|B7FH03|B7FH03_MEDTR Putative uncharacterized protein OS=Medic...   183   6e-45
tr|A5AE63|A5AE63_VITVI Putative uncharacterized protein OS=Vitis...   183   6e-45
tr|Q14K86|Q14K86_PLAAC Chlorophyll a/b-binding protein, photosys...   182   8e-45
tr|A9T3X6|A9T3X6_PHYPA Predicted protein OS=Physcomitrella paten...   180   4e-44
tr|Q9C5R7|Q9C5R7_ARATH AT3g54890 OS=Arabidopsis thaliana GN=AT3g...   179   9e-44
tr|Q3EAJ6|Q3EAJ6_ARATH Uncharacterized protein At3g54890.3 OS=Ar...   178   1e-43
tr|Q3E725|Q3E725_ARATH Uncharacterized protein At3g54890.2 OS=Ar...   178   1e-43
tr|Q01667|Q01667_ARATH AT3g54890 (Chlorophyll A/B-binding protei...   178   1e-43
tr|A9TJX6|A9TJX6_PHYPA Predicted protein OS=Physcomitrella paten...   178   1e-43
tr|A9PJ58|A9PJ58_POPJC Putative uncharacterized protein OS=Popul...   178   1e-43
tr|A8MS75|A8MS75_ARATH Uncharacterized protein At3g54890.4 OS=Ar...   178   1e-43
tr|Q40512|Q40512_TOBAC Photosystem I light-harvesting chlorophyl...   178   2e-43
tr|Q02069|Q02069_PINSY Type 1 chlorophyll a /b-binding protein O...   176   6e-43
tr|Q7DM40|Q7DM40_PINSY Type 1 chlorophyll a /b-binding protein (...   171   2e-41
tr|Q9M539|Q9M539_9LAMI Chlorophyll a/b-binding protein type I (F...   145   2e-33
tr|A2SY12|A2SY12_MESVI Light-harvesting chlorophyll-a/b binding ...   127   3e-28
tr|A9NQL6|A9NQL6_PICSI Putative uncharacterized protein OS=Picea...   117   3e-25
tr|Q9FVE3|Q9FVE3_CHLRE Chlorophyll A-B binding protein of LHCI O...   108   2e-22
tr|Q7DM26|Q7DM26_CHLRE Light harvesting complex protein I-20 OS=...   108   2e-22

>tr|A9T399|A9T399_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_139567 PE=4 SV=1
          Length = 241

 Score =  198 bits (503), Expect = 2e-49
 Identities = 97/141 (68%), Positives = 111/141 (78%)
 Frame = +3

Query: 45  MASTSMACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPAH 224
           MA+ + A   ++V  ++     S F G+ S +  L CSNGSR+ CMA  EWLPG PRP++
Sbjct: 1   MATAAAAQVSRVVTGVATAQKSSFFAGSSSVS-LLGCSNGSRV-CMA--EWLPGNPRPSY 56

Query: 225 LDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQK 404
           LDGS+PGDFGFDPLGL EVPEN  RFKESELIH RWAMLAVPG+L+PEALG GNWV AQK
Sbjct: 57  LDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNWVSAQK 116

Query: 405 WAATPGGHATYLGNPVPWGNL 467
           WAATPGG ATYLGNPVPWGNL
Sbjct: 117 WAATPGGQATYLGNPVPWGNL 137



 Score = 36.2 bits (82), Expect = 1.2
 Identities = 21/49 (42%), Positives = 25/49 (51%)
 Frame = +1

Query: 406 GQLRQAGMPPIWAILYPGATCPSLLPSNFLPFAFSEALRNEENDPERRK 552
           GQ    G P  W  L      P +L   FL  AF+E+ RN E DPE+RK
Sbjct: 123 GQATYLGNPVPWGNL------PVILAIEFLAIAFAESQRNGEPDPEKRK 165


>tr|A9NRY9|A9NRY9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  192 bits (489), Expect = 8e-48
 Identities = 93/140 (66%), Positives = 111/140 (79%), Gaps = 3/140 (2%)
 Frame = +3

Query: 51  STSMACSHQLVP---ALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 221
           +T++ C H + P   A +    KSRF  +P+ + +L   NGSR++   S+EW+PGQPRPA
Sbjct: 2   ATAVGCLHIVAPVAFAGTFSSAKSRFF-SPTNSLSLGVCNGSRVSM--SAEWMPGQPRPA 58

Query: 222 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 401
           HLDGS+PGDFGFDPLGL  VPEN  R+KESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ
Sbjct: 59  HLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQ 118

Query: 402 KWAATPGGHATYLGNPVPWG 461
           KWAA PGG ATYLG PVPWG
Sbjct: 119 KWAAIPGGQATYLGVPVPWG 138


>tr|B6SSN3|B6SSN3_MAIZE Chlorophyll a-b binding protein 6A OS=Zea
           mays PE=2 SV=1
          Length = 245

 Score =  190 bits (483), Expect = 4e-47
 Identities = 98/144 (68%), Positives = 109/144 (75%)
 Frame = +3

Query: 36  VRAMASTSMACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPR 215
           V A +S   +CS   VP+L  P  +S  L AP  A A   +   R+T   S+EW+PGQPR
Sbjct: 2   VMASSSGLRSCSAVGVPSLLAPSSRSGRL-APFCANA---TTSGRVTM--SAEWMPGQPR 55

Query: 216 PAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVD 395
           PAHLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPGIL+PEALGLGNWV 
Sbjct: 56  PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWVK 115

Query: 396 AQKWAATPGGHATYLGNPVPWGNL 467
           AQ+WAA PGG ATYLG PVPWG L
Sbjct: 116 AQEWAAVPGGQATYLGAPVPWGTL 139



 Score = 33.9 bits (76), Expect = 6.0
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 373 WGWVTGWMRRNGQLRQAGMPPIWAILYPGATCPSLLPSNFLPFAFSEALRNEENDPERRK 552
           W  V G     GQ    G P  W       T P++L   F+  AF+E  R  E DPE++K
Sbjct: 119 WAAVPG-----GQATYLGAPVPWG------TLPTILVIEFVAIAFAEHQRTMEKDPEKKK 167


>tr|B4XGT7|B4XGT7_9POAL Chloroplast chlorophyll a/b binding protein
           OS=Phyllostachys edulis GN=Lhca1 PE=2 SV=1
          Length = 246

 Score =  189 bits (481), Expect = 7e-47
 Identities = 96/144 (66%), Positives = 107/144 (74%), Gaps = 2/144 (1%)
 Frame = +3

Query: 42  AMASTS--MACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPR 215
           AMAS+S   +CS   VP+L  P  +S   G P  A A   +   R+T   S+EW PGQPR
Sbjct: 2   AMASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYA---TTSGRVTM--SAEWFPGQPR 56

Query: 216 PAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVD 395
           PAHLDGSSPGDFGFDPLGL  VPENF RFKESE+ HCRWAML VPG+L+PEALGLGNWV 
Sbjct: 57  PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWVK 116

Query: 396 AQKWAATPGGHATYLGNPVPWGNL 467
           AQ+WAA PGG ATY G PVPWGNL
Sbjct: 117 AQEWAAVPGGQATYFGVPVPWGNL 140



 Score = 34.7 bits (78), Expect = 3.5
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +1

Query: 373 WGWVTGWMRRNGQLRQAGMPPIWAILYPGATCPSLLPSNFLPFAFSEALRNEENDPERRK 552
           W  V G     GQ    G+P  W  L      P++L   FL  AF+E  R  E DPE++K
Sbjct: 120 WAAVPG-----GQATYFGVPVPWGNL------PTILAIEFLAIAFAEHQRTMEKDPEKKK 168


>tr|A9NS16|A9NS16_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  189 bits (481), Expect = 7e-47
 Identities = 91/142 (64%), Positives = 110/142 (77%), Gaps = 3/142 (2%)
 Frame = +3

Query: 51  STSMACSHQLVPAL---SVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 221
           +T++ CSH + P +   +    KSRF  +P+ + +L   NGSR++   S+EW+PGQPRP 
Sbjct: 2   ATAVGCSHVVAPVVFAGAFSSAKSRFF-SPTNSLSLGVCNGSRVSM--SAEWMPGQPRPP 58

Query: 222 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 401
           HLDGS+PGDFGFDPL L  VPEN  R+KESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ
Sbjct: 59  HLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQ 118

Query: 402 KWAATPGGHATYLGNPVPWGNL 467
           KWAA PG  ATYLG PVPWG L
Sbjct: 119 KWAAIPGNQATYLGAPVPWGYL 140



 Score = 34.3 bits (77), Expect = 4.6
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 370 LWGWVTG--WMRRNG-QLRQAGMPPIWAILYPGATCPSLLPSNFLPFAFSEALRNEENDP 540
           L  WV    W    G Q    G P  W  L      P +L   FL  AF E+ RN E DP
Sbjct: 111 LGNWVEAQKWAAIPGNQATYLGAPVPWGYL------PVILAVEFLSIAFVESQRNGEPDP 164

Query: 541 ERRK 552
           E+RK
Sbjct: 165 EKRK 168



 Score = 33.9 bits (76), Expect = 6.0
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +3

Query: 93  SVPLPKSRFLGAP---SFAPALACSNGSRLTCMASSEWLPGQPRPAHLDGSSPGDFGFDP 263
           ++P  ++ +LGAP    + P +       +  + S     G+P P       PG   FDP
Sbjct: 122 AIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR--NGEPDPEKR--KYPGG-AFDP 176

Query: 264 LGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLG 383
           LG ++ P  F  +K  E+ + R A+LA  G  +  +   G
Sbjct: 177 LGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPG 216


>tr|A9P266|A9P266_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 247

 Score =  189 bits (480), Expect = 8e-47
 Identities = 91/142 (64%), Positives = 109/142 (76%), Gaps = 3/142 (2%)
 Frame = +3

Query: 51  STSMACSHQLVPAL---SVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 221
           +T++ CSH + P +   +    KSRF  +P+ + +L   NGSR++   S EW+PGQPRP 
Sbjct: 2   ATAVGCSHVVAPVVFAGAFSSAKSRFF-SPTNSLSLGVCNGSRVSM--SDEWMPGQPRPP 58

Query: 222 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 401
           HLDGS+PGDFGFDPL L  VPEN  R+KESELIHCRWAMLAVPG+L+PEALGLGNWV+AQ
Sbjct: 59  HLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWVEAQ 118

Query: 402 KWAATPGGHATYLGNPVPWGNL 467
           KWAA PG  ATYLG PVPWG L
Sbjct: 119 KWAAIPGNQATYLGAPVPWGYL 140



 Score = 34.3 bits (77), Expect = 4.6
 Identities = 25/64 (39%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 370 LWGWVTG--WMRRNG-QLRQAGMPPIWAILYPGATCPSLLPSNFLPFAFSEALRNEENDP 540
           L  WV    W    G Q    G P  W  L      P +L   FL  AF E+ RN E DP
Sbjct: 111 LGNWVEAQKWAAIPGNQATYLGAPVPWGYL------PVILAVEFLSIAFVESQRNGEPDP 164

Query: 541 ERRK 552
           E+RK
Sbjct: 165 EKRK 168



 Score = 33.9 bits (76), Expect = 6.0
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +3

Query: 93  SVPLPKSRFLGAP---SFAPALACSNGSRLTCMASSEWLPGQPRPAHLDGSSPGDFGFDP 263
           ++P  ++ +LGAP    + P +       +  + S     G+P P       PG   FDP
Sbjct: 122 AIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR--NGEPDPEKR--KYPGG-AFDP 176

Query: 264 LGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLG 383
           LG ++ P  F  +K  E+ + R A+LA  G  +  +   G
Sbjct: 177 LGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPG 216


>tr|Q9ZSU0|Q9ZSU0_ORYSA Chlorophyll a/b-binding protein OS=Oryza
           sativa GN=Cab26 PE=2 SV=1
          Length = 241

 Score =  189 bits (479), Expect = 1e-46
 Identities = 93/142 (65%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
 Frame = +3

Query: 45  MASTSM-ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 221
           MA++ + +CS   VP+L  P      L   ++A     +   R+T   S+EW+PGQPRPA
Sbjct: 1   MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYA-----TTSGRVTM--SAEWMPGQPRPA 53

Query: 222 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 401
           HLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV AQ
Sbjct: 54  HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQ 113

Query: 402 KWAATPGGHATYLGNPVPWGNL 467
           +WAA PGG ATYLGNPVPWG L
Sbjct: 114 EWAAEPGGQATYLGNPVPWGTL 135


>tr|Q5ZA98|Q5ZA98_ORYSJ Os06g0320500 protein OS=Oryza sativa subsp.
           japonica GN=P0578B12.4 PE=2 SV=1
          Length = 241

 Score =  189 bits (479), Expect = 1e-46
 Identities = 93/142 (65%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
 Frame = +3

Query: 45  MASTSM-ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 221
           MA++ + +CS   VP+L  P      L   ++A     +   R+T   S+EW+PGQPRPA
Sbjct: 1   MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYA-----TTSGRVTM--SAEWMPGQPRPA 53

Query: 222 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 401
           HLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV AQ
Sbjct: 54  HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQ 113

Query: 402 KWAATPGGHATYLGNPVPWGNL 467
           +WAA PGG ATYLGNPVPWG L
Sbjct: 114 EWAAEPGGQATYLGNPVPWGTL 135


>tr|A2YCB9|A2YCB9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22755 PE=4 SV=1
          Length = 241

 Score =  189 bits (479), Expect = 1e-46
 Identities = 93/142 (65%), Positives = 108/142 (76%), Gaps = 1/142 (0%)
 Frame = +3

Query: 45  MASTSM-ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQPRPA 221
           MA++ + +CS   VP+L  P      L   ++A     +   R+T   S+EW+PGQPRPA
Sbjct: 1   MATSGLRSCSAVGVPSLLAPSSNRSRLPVCAYA-----TTSGRVTM--SAEWMPGQPRPA 53

Query: 222 HLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWVDAQ 401
           HLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV AQ
Sbjct: 54  HLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWVQAQ 113

Query: 402 KWAATPGGHATYLGNPVPWGNL 467
           +WAA PGG ATYLGNPVPWG L
Sbjct: 114 EWAAEPGGQATYLGNPVPWGTL 135


>tr|B4FZL4|B4FZL4_MAIZE Chlorophyll a-b binding protein 6A OS=Zea
           mays PE=2 SV=1
          Length = 249

 Score =  187 bits (476), Expect = 2e-46
 Identities = 97/145 (66%), Positives = 109/145 (75%), Gaps = 3/145 (2%)
 Frame = +3

Query: 42  AMASTSM---ACSHQLVPALSVPLPKSRFLGAPSFAPALACSNGSRLTCMASSEWLPGQP 212
           AMAS+S    +CS   VP+L  P   S          A A ++G R+T   S+EW+PGQP
Sbjct: 2   AMASSSSGLRSCSALGVPSLLAPSTSSSSRSGRLPFCAHATTSG-RVTM--SAEWMPGQP 58

Query: 213 RPAHLDGSSPGDFGFDPLGLAEVPENFARFKESELIHCRWAMLAVPGILLPEALGLGNWV 392
           RPAHLDGSSPGDFGFDPLGLA VPENF RFKESE+ HCRWAMLAVPG+L+PEALGLGNWV
Sbjct: 59  RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWV 118

Query: 393 DAQKWAATPGGHATYLGNPVPWGNL 467
            AQ+WAA PGG ATYLG PVPWG L
Sbjct: 119 KAQEWAAVPGGQATYLGAPVPWGTL 143



 Score = 34.3 bits (77), Expect = 4.6
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 373 WGWVTGWMRRNGQLRQAGMPPIWAILYPGATCPSLLPSNFLPFAFSEALRNEENDPERRK 552
           W  V G     GQ    G P  W       T P++L   F+  AF+E  R  E DPE++K
Sbjct: 123 WAAVPG-----GQATYLGAPVPWG------TLPTILAVEFVAIAFAEHQRTMEKDPEKKK 171