NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956715
Clone id TST39A01NGRL0026_H11
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_H11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCTCTCAGTGGGCGCACGGCGGTAGTTTTCGAGCACATAAGAAGCTTTGCGACGCCGA
TCTTATGTGAGCAGCTATGGCGATGGACACCCCCTCTTAAAAGCCCCCTCTTCTTCTTCA
TCCACCCGCAAGAACAAAGAAATCTGCTGCAAACCCCTCATGGCGGCCCTCACCCTGCAT
TCCCACTTCGCCCTCTCTTCTTCGCATGTAGCTGCGAAGTCTAGCTTTTCTGCATCCCCG
TTGGTGCGTTTAGGGCTTCGCAGTCCTCGATCTTCGTCTGCTATCACCTCCGCTTCTGTC
AAGGAGGACGATCTTGTTGCTGCGGCTACGACTACATCTCCGCCTCAGAACGAGGCCCCT
GGCTACTTCCTGTCGGGGGAGTGGCCCGAGAATTTCTCTATCCTTAACTACGAGGACCTT
TGCAAGCATTATGAGCCCATTCTCCTGAAAGAAGAGACACAGCCGCACTCTTACCTTGCT
GACGTGATGTCCAGCATCAAGTTTACTGCGATGCCAGATCAGTTGCTGGAAGAGGTAGAC
CATTACTTTCTTAGTGTCTCTGGCTTGCCGGTC
■■Homology search results ■■ -
sp_hit_id A4VPP0
Definition sp|A4VPP0|IF2_PSEU5 Translation initiation factor IF-2 OS=Pseudomonas stutzeri (strain A1501)
Align length 80
Score (bit) 31.2
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H11, 5'
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4VPP0|IF2_PSEU5 Translation initiation factor IF-2 OS=Pseudo...    31   3.8  
sp|Q48558|PEPDA_LACHE Dipeptidase A OS=Lactobacillus helveticus ...    31   5.1  
sp|O13919|PST2_SCHPO Paired amphipathic helix protein pst2 OS=Sc...    30   8.6  

>sp|A4VPP0|IF2_PSEU5 Translation initiation factor IF-2
           OS=Pseudomonas stutzeri (strain A1501) GN=infB PE=3 SV=1
          Length = 837

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -2

Query: 326 AAATRSSSLTEAEVIADEDRGLRSPKRTNGDAEKLDFAATCEEERA-KWECRVRAAMRGL 150
           AAA  +SS   A+V+A  +    +P+R   +  +++   + ++ER  +   + R +++  
Sbjct: 152 AAAESASSAEPAQVVAAVEAAAPAPERKKEEPRRVEKPRSDDDERRDRKHAQHRPSLKTK 211

Query: 149 QQISLFLRVDEEEEGAFKRG 90
             ++  +R  E+E   F+RG
Sbjct: 212 APLARTVRSGEDEADGFRRG 231


>sp|Q48558|PEPDA_LACHE Dipeptidase A OS=Lactobacillus helveticus
           GN=pepDA PE=1 SV=1
          Length = 474

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 385 PENFSILNYEDLCKHYEPILLKEETQPHSYLADVMSSIKFTAMPD 519
           PE F ++N ED  KHY  ++ K++      LA+  + +++T+ PD
Sbjct: 35  PEGFKVVNPEDQPKHYTSVISKQKIDDED-LAE--TPLRYTSAPD 76


>sp|O13919|PST2_SCHPO Paired amphipathic helix protein pst2
           OS=Schizosaccharomyces pombe GN=pst2 PE=1 SV=1
          Length = 1075

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 373 SGEWPENFSILNYEDLCKHYEPILLKEETQPHSYLADVMSSIKFTAMPDQLLEEVDH 543
           SG   ++ S  +  D   +  P+  K+ +QP    A + +S+K+ + PD LLE  DH
Sbjct: 674 SGNKSQSNSQNSLSDESGNVTPVSKKQLSQP---AAAIKASLKYPSHPDSLLEHQDH 727
tr_hit_id A9TIX8
Definition tr|A9TIX8|A9TIX8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 67
Score (bit) 97.8
E-value 4.0e-19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956715|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_H11, 5'
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TIX8|A9TIX8_PHYPA Predicted protein OS=Physcomitrella paten...    98   4e-19
tr|A9T9M7|A9T9M7_PHYPA Predicted protein (Fragment) OS=Physcomit...    94   5e-18
tr|A9TZ25|A9TZ25_PHYPA Predicted protein OS=Physcomitrella paten...    93   9e-18
tr|A9P0P2|A9P0P2_PICSI Putative uncharacterized protein OS=Picea...    93   1e-17
tr|Q7XRN1|Q7XRN1_ORYSJ Os04g0136700 protein OS=Oryza sativa subs...    71   5e-11
tr|A3AQJ5|A3AQJ5_ORYSJ Putative uncharacterized protein OS=Oryza...    71   5e-11
tr|Q01N18|Q01N18_ORYSA OSIGBa0147B06.5 protein OS=Oryza sativa G...    66   1e-09
tr|Q6V9H7|Q6V9H7_ORYSI Putative brown planthopper susceptibility...    60   7e-08
tr|Q6V9H6|Q6V9H6_ORYSI Brown planthopper-induced resistance prot...    60   7e-08
tr|Q6K9S2|Q6K9S2_ORYSJ cDNA clone:006-202-B08, full insert seque...    60   7e-08
tr|Q0DWE9|Q0DWE9_ORYSJ Os02g0818000 protein (Fragment) OS=Oryza ...    60   7e-08
tr|A2XB21|A2XB21_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|B6T4C2|B6T4C2_MAIZE CBS domain containing protein OS=Zea mays...    54   8e-06
tr|B2VVI1|B2VVI1_PYRTR Putative uncharacterized protein OS=Pyren...    35   2.9  
tr|A5DDD9|A5DDD9_PICGU Putative uncharacterized protein OS=Pichi...    35   3.8  
tr|Q2H570|Q2H570_CHAGB Putative uncharacterized protein OS=Chaet...    34   6.6  

>tr|A9TIX8|A9TIX8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_146242 PE=4 SV=1
          Length = 197

 Score = 97.8 bits (242), Expect = 4e-19
 Identities = 43/67 (64%), Positives = 53/67 (79%)
 Frame = +1

Query: 373 SGEWPENFSILNYEDLCKHYEPILLKEETQPHSYLADVMSSIKFTAMPDQLLEEVDHYFL 552
           SGEW ENFS+LNYEDL K+YE +L K E QP ++LADVMS   FTA P+Q LEE+DHYF 
Sbjct: 42  SGEWAENFSLLNYEDLSKYYEDVLFKPEAQPSTHLADVMSKTIFTASPEQALEEIDHYFA 101

Query: 553 SVSGLPV 573
            ++G+PV
Sbjct: 102 DITGVPV 108


>tr|A9T9M7|A9T9M7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_47558 PE=4 SV=1
          Length = 151

 Score = 94.0 bits (232), Expect = 5e-18
 Identities = 44/67 (65%), Positives = 51/67 (76%)
 Frame = +1

Query: 373 SGEWPENFSILNYEDLCKHYEPILLKEETQPHSYLADVMSSIKFTAMPDQLLEEVDHYFL 552
           SGEW ENFS+LNYEDL K+YE IL K E QP ++LAD+MS    TA P+Q LEEVD YF 
Sbjct: 1   SGEWAENFSLLNYEDLSKYYEHILFKPEAQPSTHLADIMSRTIITASPEQSLEEVDRYFY 60

Query: 553 SVSGLPV 573
            +SGLPV
Sbjct: 61  DISGLPV 67


>tr|A9TZ25|A9TZ25_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_152884 PE=4 SV=1
          Length = 176

 Score = 93.2 bits (230), Expect = 9e-18
 Identities = 44/71 (61%), Positives = 52/71 (73%)
 Frame = +1

Query: 361 GYFLSGEWPENFSILNYEDLCKHYEPILLKEETQPHSYLADVMSSIKFTAMPDQLLEEVD 540
           G   SGEW ENFS+LNYEDL K+YEP L K E QP + LA+VMS + + A PDQ LEEVD
Sbjct: 22  GILPSGEWSENFSLLNYEDLTKYYEPKLFKPEAQPDTILAEVMSKLMYIAFPDQSLEEVD 81

Query: 541 HYFLSVSGLPV 573
            +F  +SGLPV
Sbjct: 82  CHFAEISGLPV 92


>tr|A9P0P2|A9P0P2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 242

 Score = 92.8 bits (229), Expect = 1e-17
 Identities = 44/87 (50%), Positives = 62/87 (71%)
 Frame = +1

Query: 313 LVAAATTTSPPQNEAPGYFLSGEWPENFSILNYEDLCKHYEPILLKEETQPHSYLADVMS 492
           +V A+  ++  + E P   LSGEWP NFS+LN+EDL  + EP++ KEE QP ++L DVMS
Sbjct: 70  VVLASGDSADVKVETPEEVLSGEWPGNFSMLNFEDLSSYLEPMIFKEEAQPSAFLGDVMS 129

Query: 493 SIKFTAMPDQLLEEVDHYFLSVSGLPV 573
               TA  +QLLE++D++F S+SGLPV
Sbjct: 130 RTIRTATAEQLLEDIDYHFASISGLPV 156


>tr|Q7XRN1|Q7XRN1_ORYSJ Os04g0136700 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0095E20.4 PE=2 SV=2
          Length = 220

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +1

Query: 316 VAAATTTSPPQNEAPGYFLSGEWPENFSILNYEDLCKHYE-PILLKEETQPHSYLADVMS 492
           VAA     P  +E P   LSGEWPENFS+L+Y DL  + E  I+  ++  P + L +VMS
Sbjct: 48  VAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMS 107

Query: 493 SIKFTAMPDQLLEEVDHYFLSVSGLPV 573
            +   AM DQ L ++D +F + SGLPV
Sbjct: 108 RLVQVAMADQRLADIDAFFAAQSGLPV 134


>tr|A3AQJ5|A3AQJ5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_013067 PE=4 SV=1
          Length = 238

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
 Frame = +1

Query: 316 VAAATTTSPPQNEAPGYFLSGEWPENFSILNYEDLCKHYE-PILLKEETQPHSYLADVMS 492
           VAA     P  +E P   LSGEWPENFS+L+Y DL  + E  I+  ++  P + L +VMS
Sbjct: 48  VAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMS 107

Query: 493 SIKFTAMPDQLLEEVDHYFLSVSGLPV 573
            +   AM DQ L ++D +F + SGLPV
Sbjct: 108 RLVQVAMADQRLADIDAFFAAQSGLPV 134


>tr|Q01N18|Q01N18_ORYSA OSIGBa0147B06.5 protein OS=Oryza sativa
           GN=OSIGBa0147B06.5 PE=4 SV=1
          Length = 224

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = +1

Query: 319 AAATTTSPPQNEAPGYFLSGEWPENFSILNYEDLCKHYE-PILLKEETQPHSYLADVMSS 495
           AA     P  +E P   LSGEWPENFS+L+Y DL  + E  I+  ++  P + L +VMS 
Sbjct: 53  AAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSR 112

Query: 496 IKFTAMPDQLLEEVDHYFLSVSGLPV 573
               AM DQ L ++D +F + SGLPV
Sbjct: 113 PVQVAMADQRLADIDAFFGAQSGLPV 138


>tr|Q6V9H7|Q6V9H7_ORYSI Putative brown planthopper susceptibility
           protein Hd002A OS=Oryza sativa subsp. indica PE=2 SV=1
          Length = 173

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +1

Query: 349 NEAPGYFLSGEWPENFSILNYEDLCKHY--EPILLKEETQPHSYLADVMSSIKFTAMPDQ 522
           +E P   +SGEWPENFS+L+Y+DL  +   +    + + Q  + L++ MS+    A  +Q
Sbjct: 10  DENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQADNQRVALLSEAMSAPVLVATAEQ 69

Query: 523 LLEEVDHYFLSVSGLPV 573
            LEEV+ +F +VSGLPV
Sbjct: 70  TLEEVECHFETVSGLPV 86


>tr|Q6V9H6|Q6V9H6_ORYSI Brown planthopper-induced resistance protein
           1 OS=Oryza sativa subsp. indica GN=Bi1 PE=2 SV=1
          Length = 284

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +1

Query: 349 NEAPGYFLSGEWPENFSILNYEDLCKHY--EPILLKEETQPHSYLADVMSSIKFTAMPDQ 522
           +E P   +SGEWPENFS+L+Y+DL  +   +    + + Q  + L++ MS+    A  +Q
Sbjct: 133 DENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQADNQRVALLSEAMSAPVLVATAEQ 192

Query: 523 LLEEVDHYFLSVSGLPV 573
            LEEV+ +F +VSGLPV
Sbjct: 193 TLEEVECHFETVSGLPV 209


>tr|Q6K9S2|Q6K9S2_ORYSJ cDNA clone:006-202-B08, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OJ1202_E07.3-1 PE=2
           SV=1
          Length = 212

 Score = 60.5 bits (145), Expect = 7e-08
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +1

Query: 349 NEAPGYFLSGEWPENFSILNYEDLCKHY--EPILLKEETQPHSYLADVMSSIKFTAMPDQ 522
           +E P   +SGEWPENFS+L+Y+DL  +   +    + + Q  + L++ MS+    A  +Q
Sbjct: 49  DENPEAIISGEWPENFSLLSYDDLRAYLQSQEAAAQADNQRVALLSEAMSAPVLVATAEQ 108

Query: 523 LLEEVDHYFLSVSGLPV 573
            LEEV+ +F +VSGLPV
Sbjct: 109 TLEEVECHFETVSGLPV 125