DK956733 |
Clone id |
TST39A01NGRL0026_I05 |
Library |
TST39 |
Length |
630 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_I05. 5' end sequence. |
Accession |
DK956733 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1624Contig1 |
Sequence |
CAATCGCTTTTTTATAATGCCAACTTTGTTATCAAAAAAGTTTGGGCTGAAGTAGCTGCG ATTCATTTGTATCGTCTGCTCCCCGCTATCCATTATGGTTGCGTCCGCATTGGTTGTCTA GCTCCCCATGCCTGATAATCGGGCCTGCTCTTTTACACCGCTCGAGAGCCCGGGCAAGTG CCTGTGAAGCGTCTGAGAGCCGAGTATGATGACCTTGCTCCTGCCAGTGCAACTTACTAT CCTCGCGAAGAACCCCGATATGATGACCGAGAAGGCCGCCTCATGCTGAGGGAGCCTGAA TCTTTGGGGGTTGGCTATGGTTCGGGGCTATCTGGAGTAGAAATGGCTCCAGGTGGGCAT CTTGGGCTGGGTGGACTTAGTGCCACAAGCCTTGGCTTATCTGCCCATGACGACCATGCT TTCCTGGGACATAGCAGACTTGGTTTAGAATCCAGCATGATGAAGCCATCTCCTTTGGGA ATTAGTAATGGCAGACCTGACTATCTTCCCAGGCAAGAGAGCCAAGTGCCCCCTAGAGCA CGAGCTCCATTGCCTCCTGATGCCTCTCCCACCTTGTTTGTCGAAGGCCTTCCATCTGAT TGCACACGCAGGGAAGCTGCACATGTCTTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3T8J9 |
Definition |
sp|Q3T8J9|GON4L_HUMAN GON-4-like protein OS=Homo sapiens |
Align length |
88 |
Score (bit) |
33.1 |
E-value |
1.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QEZ7 |
Definition |
tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
163 |
Score (bit) |
46.2 |
E-value |
0.001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956733|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_I05, 5' (601 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genom... 46 0.001 tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea... 45 0.003 tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment) OS=Physcomit... 45 0.004 tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea... 44 0.007 tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatul... 42 0.027 tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein OS=Oryza sativa subs... 39 0.18 tr|Q0J072|Q0J072_ORYSJ Os09g0527100 protein OS=Oryza sativa subs... 39 0.18 tr|B8BDW8|B8BDW8_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.18 tr|B8BDW7|B8BDW7_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.18 tr|B7EM90|B7EM90_ORYSJ cDNA clone:J033046E14, full insert sequen... 39 0.18 tr|B7E9N3|B7E9N3_ORYSJ cDNA clone:002-108-A10, full insert seque... 39 0.18 tr|A3C0U2|A3C0U2_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.18 tr|A3C0U1|A3C0U1_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.18 tr|Q8GYL1|Q8GYL1_ARATH Putative uncharacterized protein At1g7694... 39 0.23 tr|A1A6K6|A1A6K6_ARATH At1g76940 OS=Arabidopsis thaliana PE=2 SV=1 39 0.23 tr|B8B2P5|B8B2P5_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.30 tr|Q6Z9C4|Q6Z9C4_ORYSJ Os08g0547000 protein OS=Oryza sativa subs... 38 0.40 tr|B8B9D0|B8B9D0_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.40 tr|Q6JB11|Q6JB11_MAIZE MEG5 OS=Zea mays GN=meg5 PE=2 SV=1 38 0.52 tr|A7P4N7|A7P4N7_VITVI Chromosome chr4 scaffold_6, whole genome ... 37 0.68 tr|Q2H4K4|Q2H4K4_CHAGB Putative uncharacterized protein OS=Chaet... 37 0.87 tr|A7QMY7|A7QMY7_VITVI Chromosome undetermined scaffold_129, who... 37 1.2 tr|Q53HY5|Q53HY5_TOBAC Putative uncharacterized protein c406 OS=... 35 2.6 tr|Q5AXJ0|Q5AXJ0_EMENI Putative uncharacterized protein OS=Emeri... 35 2.6 tr|B6SZV0|B6SZV0_MAIZE Nucleic acid binding protein OS=Zea mays ... 35 3.4 tr|B4FCH4|B4FCH4_MAIZE Putative uncharacterized protein OS=Zea m... 35 3.4 tr|A6C232|A6C232_9PLAN 4Fe-4S ferredoxin, iron-sulfur binding pr... 34 7.5 tr|Q5VP35|Q5VP35_ORYSJ cDNA clone:006-204-E02, full insert seque... 34 7.5 tr|A4PB67|A4PB67_HUMAN YY1AP-related protein1 OS=Homo sapiens PE... 33 9.8
>tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037217001 PE=4 SV=1 Length = 230
Score = 46.2 bits (108), Expect = 0.001 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 7/163 (4%) Frame = +2
Query: 134 REPGQVP---VKRLRAEYDDLAPAS---ATYYPREEPRYDDREGRLMLREPEXXXXXXXX 295 R+P +P KR R++YD P +Y+ RE D+R +R+ + Sbjct: 12 RQPPPIPSLSAKRPRSDYD--VPGGHDLPSYFSRE----DERAAHRSIRDSDSIGASYDR 65
Query: 296 XXXXXEMAPXXXXXXXXXXXXXXXXXXXDDHAFLGHSRLGLESSMMKPSPLGISNGRPDY 475 +M P DD +G + + + +K LG S GRP+ Sbjct: 66 YLRNAQM-PSYGGDSGRPLSGGITSHPVDDPRVVGVRGVD-QGATVKSQSLGFSGGRPEL 123
Query: 476 -LPRQESQVXXXXXXXXXXXXXXTLFVEGLPSDCTRREAAHVF 601 LP S TLFVEGLP++CTRRE +H+F Sbjct: 124 PLPPDASS---------------TLFVEGLPANCTRREVSHIF 151
>tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 265
Score = 45.1 bits (105), Expect = 0.003 Identities = 52/172 (30%), Positives = 63/172 (36%), Gaps = 24/172 (13%) Frame = +2
Query: 158 KRLRAEYDDLAPASAT---YYPREEPRYDDREGRLMLREPEXXXXXXXXXXXXXEMA--- 319 KR R EYD L S Y PRE+PR D+R RL LRE + + Sbjct: 25 KRPRNEYDLLTSGSRDGPGYLPREDPRLDERSRRL-LRETDPLGPAYERYARNGLPSYGS 83
Query: 320 --------PXXXXXXXXXXXXXXXXXXXDDHAFLGHSRLGLESSM--------MKPSPLG 451 DD +G RL +++ + K S L Sbjct: 84 SGLNAGDLGGLGMGLGRSAGSGLGGSALDDQVLMGR-RLSMDAGLGGKGQGLGFKDSQLR 142
Query: 452 ISNGRPD--YLPRQESQVXXXXXXXXXXXXXXTLFVEGLPSDCTRREAAHVF 601 RPD +LP S TLFVEGLP CTRREAAH+F Sbjct: 143 DPLRRPDNDHLPPDASN---------------TLFVEGLPPKCTRREAAHIF 179
>tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18967 PE=4 SV=1 Length = 158
Score = 44.7 bits (104), Expect = 0.004 Identities = 23/56 (41%), Positives = 29/56 (51%) Frame = +2
Query: 434 KPSPLGISNGRPDYLPRQESQVXXXXXXXXXXXXXXTLFVEGLPSDCTRREAAHVF 601 +P LG++ G P E V TLFV+GLP DC+RREAAH+F Sbjct: 39 RPGALGLNGGAP------EPDVLRGGLEVLPPDASSTLFVDGLPQDCSRREAAHIF 88
>tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 274
Score = 43.9 bits (102), Expect = 0.007 Identities = 18/20 (90%), Positives = 20/20 (100%) Frame = +2
Query: 542 TLFVEGLPSDCTRREAAHVF 601 TLFVEGLP+DCTRREAAH+F Sbjct: 159 TLFVEGLPADCTRREAAHIF 178
>tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatula GN=rbp1 PE=2 SV=1 Length = 261
Score = 42.0 bits (97), Expect = 0.027 Identities = 16/20 (80%), Positives = 19/20 (95%) Frame = +2
Query: 542 TLFVEGLPSDCTRREAAHVF 601 TL++EGLPSDCTRRE AH+F Sbjct: 152 TLYIEGLPSDCTRREVAHIF 171
>tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein OS=Oryza sativa subsp. japonica GN=OJ1439_F07.25 PE=4 SV=1 Length = 235
Score = 39.3 bits (90), Expect = 0.18 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = +2
Query: 542 TLFVEGLPSDCTRREAAHVF 601 TL+VEGLPS+CT+RE AH+F Sbjct: 138 TLYVEGLPSNCTKREVAHIF 157
>tr|Q0J072|Q0J072_ORYSJ Os09g0527100 protein OS=Oryza sativa subsp. japonica GN=Os09g0527100 PE=4 SV=1 Length = 149
Score = 39.3 bits (90), Expect = 0.18 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = +2
Query: 542 TLFVEGLPSDCTRREAAHVF 601 TL+VEGLPS+CT+RE AH+F Sbjct: 52 TLYVEGLPSNCTKREVAHIF 71
>tr|B8BDW8|B8BDW8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_32115 PE=4 SV=1 Length = 235
Score = 39.3 bits (90), Expect = 0.18 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = +2
Query: 542 TLFVEGLPSDCTRREAAHVF 601 TL+VEGLPS+CT+RE AH+F Sbjct: 138 TLYVEGLPSNCTKREVAHIF 157
>tr|B8BDW7|B8BDW7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_32114 PE=4 SV=1 Length = 119
Score = 39.3 bits (90), Expect = 0.18 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = +2
Query: 542 TLFVEGLPSDCTRREAAHVF 601 TL+VEGLPS+CT+RE AH+F Sbjct: 22 TLYVEGLPSNCTKREVAHIF 41
>tr|B7EM90|B7EM90_ORYSJ cDNA clone:J033046E14, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 135
Score = 39.3 bits (90), Expect = 0.18 Identities = 15/20 (75%), Positives = 19/20 (95%) Frame = +2
Query: 542 TLFVEGLPSDCTRREAAHVF 601 TL+VEGLPS+CT+RE AH+F Sbjct: 38 TLYVEGLPSNCTKREVAHIF 57
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