DK956733
Clone id TST39A01NGRL0026_I05
Library
Length 630
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_I05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CAATCGCTTTTTTATAATGCCAACTTTGTTATCAAAAAAGTTTGGGCTGAAGTAGCTGCG
ATTCATTTGTATCGTCTGCTCCCCGCTATCCATTATGGTTGCGTCCGCATTGGTTGTCTA
GCTCCCCATGCCTGATAATCGGGCCTGCTCTTTTACACCGCTCGAGAGCCCGGGCAAGTG
CCTGTGAAGCGTCTGAGAGCCGAGTATGATGACCTTGCTCCTGCCAGTGCAACTTACTAT
CCTCGCGAAGAACCCCGATATGATGACCGAGAAGGCCGCCTCATGCTGAGGGAGCCTGAA
TCTTTGGGGGTTGGCTATGGTTCGGGGCTATCTGGAGTAGAAATGGCTCCAGGTGGGCAT
CTTGGGCTGGGTGGACTTAGTGCCACAAGCCTTGGCTTATCTGCCCATGACGACCATGCT
TTCCTGGGACATAGCAGACTTGGTTTAGAATCCAGCATGATGAAGCCATCTCCTTTGGGA
ATTAGTAATGGCAGACCTGACTATCTTCCCAGGCAAGAGAGCCAAGTGCCCCCTAGAGCA
CGAGCTCCATTGCCTCCTGATGCCTCTCCCACCTTGTTTGTCGAAGGCCTTCCATCTGAT
TGCACACGCAGGGAAGCTGCACATGTCTTC
■■Homology search results ■■ -
sp_hit_id Q3T8J9
Definition sp|Q3T8J9|GON4L_HUMAN GON-4-like protein OS=Homo sapiens
Align length 88
Score (bit) 33.1
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956733|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_I05, 5'
(601 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3T8J9|GON4L_HUMAN GON-4-like protein OS=Homo sapiens GN=GON4... 33 1.1
sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1 30 7.1
sp|Q06741|GSA_XANCH Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 7.1
sp|Q3BPP7|GSA_XANC5 Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 7.1
sp|Q8PH40|GSA_XANAC Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 7.1

>sp|Q3T8J9|GON4L_HUMAN GON-4-like protein OS=Homo sapiens GN=GON4L
PE=1 SV=1
Length = 2241

Score = 33.1 bits (74), Expect = 1.1
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = -2

Query: 582 LRVQSDGRPSTNKVGEASGGNGARALGGTWLSCLGR*SGLPLLIPKGDGFIMLDSKP-SL 406
LR +DG + + N R+L L LG S PLL+PKG ++L KP +
Sbjct: 931 LRHMADGAREVGNMTGTTEINSDRSLEKDNLE-LGSESRYPLLLPKG---VVLKLKPVAT 986

Query: 405 LCPRKAWSSWADKPRLVALSPPSPRCPP 322
PRKAW L PSP P
Sbjct: 987 RFPRKAWRQKRSSVLKPLLIQPSPSLQP 1014


>sp|Q9HAV4|XPO5_HUMAN Exportin-5 OS=Homo sapiens GN=XPO5 PE=1 SV=1
Length = 1204

Score = 30.4 bits (67), Expect = 7.1
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Frame = -3

Query: 536 RHQEAMELVL*GALGSLAWED--------SQVCHY*FPKEMASS-------CWILNQVCY 402
+H++ +L A SLAW+D SQ+C + K++ S W+ V
Sbjct: 1020 KHEDVCTALLITAFNSLAWKDTLSCQRTTSQLC-WPLLKQVLSGTLLADAVTWLFTSVLK 1078

Query: 401 VPGKHGRHGQISQGLWH*VHPAQDAHLEPFLLQIAPNHSQPPKIQAPS 258
HG+H L H +A L P L+I Q P+IQ S
Sbjct: 1079 GLQMHGQHDGCMASLVHLAFQIYEA-LRPRYLEIRAVMEQIPEIQKDS 1125


>sp|Q06741|GSA_XANCH Glutamate-1-semialdehyde 2,1-aminomutase
OS=Xanthomonas campestris pv. phaseoli GN=hemL PE=3 SV=1
Length = 429

Score = 30.4 bits (67), Expect = 7.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3

Query: 194 QEQGHHTRLSDASQALARALERCKRAGPI 108
QE G HTRLS+A+ L LE RA I
Sbjct: 318 QEPGFHTRLSEATSMLCEGLEDAARAAGI 346


>sp|Q3BPP7|GSA_XANC5 Glutamate-1-semialdehyde 2,1-aminomutase
OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
GN=hemL PE=3 SV=1
Length = 429

Score = 30.4 bits (67), Expect = 7.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3

Query: 194 QEQGHHTRLSDASQALARALERCKRAGPI 108
QE G HTRLS+A+ L LE RA I
Sbjct: 318 QEPGFHTRLSEATSMLCEGLEDAARAAGI 346


>sp|Q8PH40|GSA_XANAC Glutamate-1-semialdehyde 2,1-aminomutase
OS=Xanthomonas axonopodis pv. citri GN=hemL PE=3 SV=1
Length = 429

Score = 30.4 bits (67), Expect = 7.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -3

Query: 194 QEQGHHTRLSDASQALARALERCKRAGPI 108
QE G HTRLS+A+ L LE RA I
Sbjct: 318 QEPGFHTRLSEATSMLCEGLEDAARAAGI 346


tr_hit_id A7QEZ7
Definition tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera
Align length 163
Score (bit) 46.2
E-value 0.001
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956733|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_I05, 5'
(601 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genom... 46 0.001
tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea... 45 0.003
tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment) OS=Physcomit... 45 0.004
tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea... 44 0.007
tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatul... 42 0.027
tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein OS=Oryza sativa subs... 39 0.18
tr|Q0J072|Q0J072_ORYSJ Os09g0527100 protein OS=Oryza sativa subs... 39 0.18
tr|B8BDW8|B8BDW8_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.18
tr|B8BDW7|B8BDW7_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.18
tr|B7EM90|B7EM90_ORYSJ cDNA clone:J033046E14, full insert sequen... 39 0.18
tr|B7E9N3|B7E9N3_ORYSJ cDNA clone:002-108-A10, full insert seque... 39 0.18
tr|A3C0U2|A3C0U2_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.18
tr|A3C0U1|A3C0U1_ORYSJ Putative uncharacterized protein OS=Oryza... 39 0.18
tr|Q8GYL1|Q8GYL1_ARATH Putative uncharacterized protein At1g7694... 39 0.23
tr|A1A6K6|A1A6K6_ARATH At1g76940 OS=Arabidopsis thaliana PE=2 SV=1 39 0.23
tr|B8B2P5|B8B2P5_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.30
tr|Q6Z9C4|Q6Z9C4_ORYSJ Os08g0547000 protein OS=Oryza sativa subs... 38 0.40
tr|B8B9D0|B8B9D0_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.40
tr|Q6JB11|Q6JB11_MAIZE MEG5 OS=Zea mays GN=meg5 PE=2 SV=1 38 0.52
tr|A7P4N7|A7P4N7_VITVI Chromosome chr4 scaffold_6, whole genome ... 37 0.68
tr|Q2H4K4|Q2H4K4_CHAGB Putative uncharacterized protein OS=Chaet... 37 0.87
tr|A7QMY7|A7QMY7_VITVI Chromosome undetermined scaffold_129, who... 37 1.2
tr|Q53HY5|Q53HY5_TOBAC Putative uncharacterized protein c406 OS=... 35 2.6
tr|Q5AXJ0|Q5AXJ0_EMENI Putative uncharacterized protein OS=Emeri... 35 2.6
tr|B6SZV0|B6SZV0_MAIZE Nucleic acid binding protein OS=Zea mays ... 35 3.4
tr|B4FCH4|B4FCH4_MAIZE Putative uncharacterized protein OS=Zea m... 35 3.4
tr|A6C232|A6C232_9PLAN 4Fe-4S ferredoxin, iron-sulfur binding pr... 34 7.5
tr|Q5VP35|Q5VP35_ORYSJ cDNA clone:006-204-E02, full insert seque... 34 7.5
tr|A4PB67|A4PB67_HUMAN YY1AP-related protein1 OS=Homo sapiens PE... 33 9.8

>tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037217001
PE=4 SV=1
Length = 230

Score = 46.2 bits (108), Expect = 0.001
Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 7/163 (4%)
Frame = +2

Query: 134 REPGQVP---VKRLRAEYDDLAPAS---ATYYPREEPRYDDREGRLMLREPEXXXXXXXX 295
R+P +P KR R++YD P +Y+ RE D+R +R+ +
Sbjct: 12 RQPPPIPSLSAKRPRSDYD--VPGGHDLPSYFSRE----DERAAHRSIRDSDSIGASYDR 65

Query: 296 XXXXXEMAPXXXXXXXXXXXXXXXXXXXDDHAFLGHSRLGLESSMMKPSPLGISNGRPDY 475
+M P DD +G + + + +K LG S GRP+
Sbjct: 66 YLRNAQM-PSYGGDSGRPLSGGITSHPVDDPRVVGVRGVD-QGATVKSQSLGFSGGRPEL 123

Query: 476 -LPRQESQVXXXXXXXXXXXXXXTLFVEGLPSDCTRREAAHVF 601
LP S TLFVEGLP++CTRRE +H+F
Sbjct: 124 PLPPDASS---------------TLFVEGLPANCTRREVSHIF 151


>tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 265

Score = 45.1 bits (105), Expect = 0.003
Identities = 52/172 (30%), Positives = 63/172 (36%), Gaps = 24/172 (13%)
Frame = +2

Query: 158 KRLRAEYDDLAPASAT---YYPREEPRYDDREGRLMLREPEXXXXXXXXXXXXXEMA--- 319
KR R EYD L S Y PRE+PR D+R RL LRE + +
Sbjct: 25 KRPRNEYDLLTSGSRDGPGYLPREDPRLDERSRRL-LRETDPLGPAYERYARNGLPSYGS 83

Query: 320 --------PXXXXXXXXXXXXXXXXXXXDDHAFLGHSRLGLESSM--------MKPSPLG 451
DD +G RL +++ + K S L
Sbjct: 84 SGLNAGDLGGLGMGLGRSAGSGLGGSALDDQVLMGR-RLSMDAGLGGKGQGLGFKDSQLR 142

Query: 452 ISNGRPD--YLPRQESQVXXXXXXXXXXXXXXTLFVEGLPSDCTRREAAHVF 601
RPD +LP S TLFVEGLP CTRREAAH+F
Sbjct: 143 DPLRRPDNDHLPPDASN---------------TLFVEGLPPKCTRREAAHIF 179


>tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_18967 PE=4 SV=1
Length = 158

Score = 44.7 bits (104), Expect = 0.004
Identities = 23/56 (41%), Positives = 29/56 (51%)
Frame = +2

Query: 434 KPSPLGISNGRPDYLPRQESQVXXXXXXXXXXXXXXTLFVEGLPSDCTRREAAHVF 601
+P LG++ G P E V TLFV+GLP DC+RREAAH+F
Sbjct: 39 RPGALGLNGGAP------EPDVLRGGLEVLPPDASSTLFVDGLPQDCSRREAAHIF 88


>tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 274

Score = 43.9 bits (102), Expect = 0.007
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +2

Query: 542 TLFVEGLPSDCTRREAAHVF 601
TLFVEGLP+DCTRREAAH+F
Sbjct: 159 TLFVEGLPADCTRREAAHIF 178


>tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatula
GN=rbp1 PE=2 SV=1
Length = 261

Score = 42.0 bits (97), Expect = 0.027
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +2

Query: 542 TLFVEGLPSDCTRREAAHVF 601
TL++EGLPSDCTRRE AH+F
Sbjct: 152 TLYIEGLPSDCTRREVAHIF 171


>tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein OS=Oryza sativa subsp.
japonica GN=OJ1439_F07.25 PE=4 SV=1
Length = 235

Score = 39.3 bits (90), Expect = 0.18
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2

Query: 542 TLFVEGLPSDCTRREAAHVF 601
TL+VEGLPS+CT+RE AH+F
Sbjct: 138 TLYVEGLPSNCTKREVAHIF 157


>tr|Q0J072|Q0J072_ORYSJ Os09g0527100 protein OS=Oryza sativa subsp.
japonica GN=Os09g0527100 PE=4 SV=1
Length = 149

Score = 39.3 bits (90), Expect = 0.18
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2

Query: 542 TLFVEGLPSDCTRREAAHVF 601
TL+VEGLPS+CT+RE AH+F
Sbjct: 52 TLYVEGLPSNCTKREVAHIF 71


>tr|B8BDW8|B8BDW8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_32115 PE=4 SV=1
Length = 235

Score = 39.3 bits (90), Expect = 0.18
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2

Query: 542 TLFVEGLPSDCTRREAAHVF 601
TL+VEGLPS+CT+RE AH+F
Sbjct: 138 TLYVEGLPSNCTKREVAHIF 157


>tr|B8BDW7|B8BDW7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_32114 PE=4 SV=1
Length = 119

Score = 39.3 bits (90), Expect = 0.18
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2

Query: 542 TLFVEGLPSDCTRREAAHVF 601
TL+VEGLPS+CT+RE AH+F
Sbjct: 22 TLYVEGLPSNCTKREVAHIF 41


>tr|B7EM90|B7EM90_ORYSJ cDNA clone:J033046E14, full insert sequence
OS=Oryza sativa subsp. japonica PE=2 SV=1
Length = 135

Score = 39.3 bits (90), Expect = 0.18
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2

Query: 542 TLFVEGLPSDCTRREAAHVF 601
TL+VEGLPS+CT+RE AH+F
Sbjct: 38 TLYVEGLPSNCTKREVAHIF 57