DK956734 |
Clone id |
TST39A01NGRL0026_I06 |
Library |
TST39 |
Length |
562 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_I06. 5' end sequence. |
Accession |
DK956734 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL134Contig1 |
Sequence |
AGCTCATCTCGAGCTAACGCGTGCGAGCCCTTCGTCTGTGCGATTCTATCGCTTGCTAGG GTAGAGCTTCCATGGCGTCCTTGGCCAGCGTGTCTTTCCAAACAGCTTCCTTCCTGGCAT CGCCCGCGTCGGCTTCTTTGCGCCGCAGCAACAGCGGCAGCGGGGCTTTGCAGGTATCAT CTGTGGGTCCTCGTCCATGTCCATCTCTACGCTTGCGTTTCGTGGCCATGGCGACCCCTA CAGATATGAATGACAAGCTTTCTCAGAGCATCAAGGAGGCAGAAGAGGTATGTGTGGCAG ATAACGGATCGGGTGAGTGCGCAGCTGCTTGGGATGAGGTGGAGGAGATATCTGCAGAGA TTGCCCACAAGCGCGTCAAGCAGTCTGAGACTAAGGATCCTCTTGAAGAGTTTTGCAAGG ATGCTCCAGAAGCTGATGAATGCAGGGTCTATGAAGATTAGGTTACCTGCAACCTGGGCA AGGTTCTCCATTCACCTTTACTTTACTAGAATGTAAGTAAAGTGCTGCTTGATTGTATAT TGATGACACACTTAATTGGAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A6Q0K5 |
Definition |
sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii |
Align length |
75 |
Score (bit) |
89.0 |
E-value |
1.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956734|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_I06, 5' (562 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas ... 89 1e-17 sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B,... 37 0.086 sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis ... 34 0.43 sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B,... 34 0.56 sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, c... 33 0.73 sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related pr... 32 2.8 sp|Q1R1P0|RECF_CHRSD DNA replication and repair protein recF OS=... 30 8.1 sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila ... 30 8.2 sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protei... 30 8.2 sp|P56916|GSC2_MOUSE Homeobox protein goosecoid-2 OS=Mus musculu... 30 8.2
>sp|A6Q0K5|CP12_CHLRE Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii GN=cp12 PE=1 SV=1 Length = 80
Score = 89.0 bits (219), Expect = 1e-17 Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 3/75 (4%) Frame = +3
Query: 243 DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKR--VKQSET-KDPLEEF 413 D+N K+ ++KEAE+ C A S +CA AWD VEE+SA ++HK+ VK T DPLE F Sbjct: 7 DLNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAF 65
Query: 414 CKDAPEADECRVYED 458 CKDAP+ADECRVYED Sbjct: 66 CKDAPDADECRVYED 80
>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1 Length = 451
Score = 36.6 bits (83), Expect = 0.086 Identities = 13/20 (65%), Positives = 17/20 (85%) Frame = +3
Query: 396 DPLEEFCKDAPEADECRVYE 455 DPLE+FCKD P +EC++YE Sbjct: 432 DPLEDFCKDNPADEECKLYE 451
>sp|O45160|U376B_CAEEL UPF0376 protein C17B7.2 OS=Caenorhabditis elegans GN=C17B7.2 PE=1 SV=1 Length = 335
Score = 34.3 bits (77), Expect = 0.43 Identities = 26/95 (27%), Positives = 42/95 (44%) Frame = +3
Query: 258 LSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEEFCKDAPEAD 437 ++Q+ E ++ + N + C +AWD E E + + + K+ L+E CKD D Sbjct: 83 VTQNFTECDKKLESKNST--CYSAWDPFPENFEE----ELDEKKKKEMLQENCKDYFGKD 136
Query: 438 ECRVYED*VTCNLGKVLHSPLLY*NVSKVLLDCIL 542 C E TC + + + V VL DC L Sbjct: 137 NCMKKEITETCGEDEWVKFRAQFIGVGNVLSDCDL 171
>sp|P25857|G3PB_ARATH Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2 Length = 447
Score = 33.9 bits (76), Expect = 0.56 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +3
Query: 396 DPLEEFCKDAPEADECRVYE 455 DPLE+FCK P +EC+VY+ Sbjct: 428 DPLEDFCKTNPADEECKVYD 447
>sp|P12859|G3PB_PEA Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2 Length = 451
Score = 33.5 bits (75), Expect = 0.73 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +3
Query: 396 DPLEEFCKDAPEADECRVYE 455 DPLE+FC+ P +EC+VYE Sbjct: 432 DPLEDFCETNPADEECKVYE 451
>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3 Length = 4655
Score = 31.6 bits (70), Expect = 2.8 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 6/74 (8%) Frame = +3
Query: 279 AEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKD------PLEEFCKDAPEADE 440 + EVC NG +C DE EE + K + E K P + C DA D+ Sbjct: 3899 SHEVC---NGVDDCGDGTDETEEHCRKPTPKPCTEYEYKCGNGHCIPHDNVCDDA---DD 3952
Query: 441 CRVYED*VTCNLGK 482 C + D + CN GK Sbjct: 3953 CGDWSDELGCNKGK 3966
>sp|Q1R1P0|RECF_CHRSD DNA replication and repair protein recF OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=recF PE=3 SV=1 Length = 361
Score = 30.0 bits (66), Expect = 8.1 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -3
Query: 386 RLLDALVGNLCRYLLHLIPSSCALT-RSVICH 294 RLLD L G C YL+ +P+ +T R + CH Sbjct: 288 RLLDELTGRTCVYLIDDLPAELDVTHRRIFCH 319
>sp|P39770|SALM_DROME Homeotic protein spalt-major OS=Drosophila melanogaster GN=salm PE=1 SV=3 Length = 1365
Score = 30.0 bits (66), Expect = 8.2 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -2
Query: 345 PPPHPKQLRTHPIRYLPHIPLLPP*CSEKACHS 247 PPP+P P P++PL PP ++ C++ Sbjct: 1231 PPPNPLMGARPPFGMFPNLPLFPPATTQNMCNA 1263
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1 Length = 657
Score = 30.0 bits (66), Expect = 8.2 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2
Query: 351 ISPPPHPKQLRTHPIRYLPHIPLLPP*CS 265 +S PP Q H + +LP PL PP CS Sbjct: 3 LSHPPQVIQPTYHTVNFLPRSPLKPPSCS 31
>sp|P56916|GSC2_MOUSE Homeobox protein goosecoid-2 OS=Mus musculus GN=Gsc2 PE=2 SV=1 Length = 198
Score = 30.0 bits (66), Expect = 8.2 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%) Frame = -2
Query: 231 PWPRNASVEMDMDEDPQMIPAKPR-CRCCCGAKKPTRAMP 115 P P ++DE +PA P C CCC + TR P Sbjct: 38 PQPVGGRNPAELDEPEAPVPAAPCACCCCCNPRAATRGTP 77
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9FP25 |
Definition |
tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence OS=Oryza sativa subsp. japonica |
Align length |
76 |
Score (bit) |
107.0 |
E-value |
6.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956734|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_I06, 5' (562 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert seque... 107 6e-22 tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza... 107 6e-22 tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subs... 100 4e-20 tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza... 100 4e-20 tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata G... 100 7e-20 tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Popul... 100 9e-20 tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea... 99 2e-19 tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 97 6e-19 tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 97 6e-19 tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Popul... 96 2e-18 tr|Q2WBV8|Q2WBV8_CYNSC Chloroplast protein 12 (Fragment) OS=Cyna... 95 3e-18 tr|O24136|O24136_TOBAC CP12 (Chloroplast protein 12) OS=Nicotian... 95 3e-18 tr|B7FGI5|B7FGI5_MEDTR Putative uncharacterized protein OS=Medic... 94 4e-18 tr|A7QEC8|A7QEC8_VITVI Chromosome chr1 scaffold_84, whole genome... 94 5e-18 tr|Q5QET3|Q5QET3_ARAHY Auxin-induced putative CP12 domain-contai... 92 1e-17 tr|Q9LZP9|Q9LZP9_ARATH CP12 protein-like protein OS=Arabidopsis ... 91 4e-17 tr|Q8LC81|Q8LC81_ARATH CP12 protein-like protein OS=Arabidopsis ... 91 6e-17 tr|O24292|O24292_PEA CP12 OS=Pisum sativum PE=2 SV=1 91 6e-17 tr|A9T5W2|A9T5W2_PHYPA Predicted protein OS=Physcomitrella paten... 91 6e-17 tr|B7FML4|B7FML4_MEDTR Putative uncharacterized protein OS=Medic... 90 9e-17 tr|Q20FC7|Q20FC7_MESVI CP12 OS=Mesostigma viride GN=CP12 PE=2 SV=1 89 1e-16 tr|A8IZ71|A8IZ71_CHLRE Small protein associating with GAPDH and ... 89 2e-16 tr|A1YMY3|A1YMY3_BRACM Putative chloroplast protein CP12 OS=Bras... 89 2e-16 tr|B1XL07|B1XL07_SYNP2 CP12 domain protein OS=Synechococcus sp. ... 89 2e-16 tr|O22914|O22914_ARATH Putative chloroplast protein CP12 OS=Arab... 88 4e-16 tr|A1YQX6|A1YQX6_VOLCA Calvin cycle protein CP12 OS=Volvox carte... 85 3e-15 tr|O24360|O24360_SPIOL CP12 OS=Spinacia oleracea PE=2 SV=1 84 4e-15 tr|B4WRK8|B4WRK8_9SYNE Putative uncharacterized protein OS=Synec... 84 7e-15 tr|Q941E3|Q941E3_ARATH At2g47400/T8I13.24 OS=Arabidopsis thalian... 84 7e-15 tr|Q20FC8|Q20FC8_MARPO CP12 OS=Marchantia polymorpha GN=CP12 PE=... 84 7e-15
>tr|Q9FP25|Q9FP25_ORYSJ cDNA clone:001-009-C09, full insert sequence OS=Oryza sativa subsp. japonica GN=P0035H10.18 PE=2 SV=1 Length = 124
Score = 107 bits (266), Expect = 6e-22 Identities = 47/76 (61%), Positives = 58/76 (76%) Frame = +3
Query: 231 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 410 ATP D++DK+S+SI +A+E C D SGECAAAWDEVEE+SA +H R K ET DPLE Sbjct: 49 ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108
Query: 411 FCKDAPEADECRVYED 458 +CKD PE DECR Y++ Sbjct: 109 YCKDNPETDECRTYDN 124
>tr|A2WNX6|A2WNX6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_01556 PE=4 SV=1 Length = 124
Score = 107 bits (266), Expect = 6e-22 Identities = 47/76 (61%), Positives = 58/76 (76%) Frame = +3
Query: 231 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 410 ATP D++DK+S+SI +A+E C D SGECAAAWDEVEE+SA +H R K ET DPLE Sbjct: 49 ATPPDISDKMSESIDKAKEACAEDTASGECAAAWDEVEELSAAASHARDKLKETSDPLEA 108
Query: 411 FCKDAPEADECRVYED 458 +CKD PE DECR Y++ Sbjct: 109 YCKDNPETDECRTYDN 124
>tr|Q10MJ5|Q10MJ5_ORYSJ Os03g0306800 protein OS=Oryza sativa subsp. japonica GN=Os03g0306800 PE=2 SV=1 Length = 131
Score = 100 bits (250), Expect = 4e-20 Identities = 54/99 (54%), Positives = 67/99 (67%), Gaps = 4/99 (4%) Frame = +3
Query: 174 VSSVGPRPCPSL-RLRFVAMA---TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEV 341 VS G R +L RL V A TP ++ K+S+SIK+AEE C D GECAAAWDEV Sbjct: 34 VSFAGRRQGRALGRLAVVVAAGSPTPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEV 93
Query: 342 EEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 458 EE+SA +H R ++ ++ DPLEE+CKD PE DECR YED Sbjct: 94 EELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131
>tr|A2XFU0|A2XFU0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11237 PE=4 SV=1 Length = 131
Score = 100 bits (250), Expect = 4e-20 Identities = 54/99 (54%), Positives = 67/99 (67%), Gaps = 4/99 (4%) Frame = +3
Query: 174 VSSVGPRPCPSL-RLRFVAMA---TPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEV 341 VS G R +L RL V A TP ++ K+S+SIK+AEE C D GECAAAWDEV Sbjct: 34 VSFAGRRQGRALGRLAVVVAAGSPTPPELAQKVSESIKQAEETCAGDPEGGECAAAWDEV 93
Query: 342 EEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 458 EE+SA +H R ++ ++ DPLEE+CKD PE DECR YED Sbjct: 94 EELSAAASHARDRKKDS-DPLEEYCKDNPETDECRTYED 131
>tr|B7XB92|B7XB92_FAGCR Chloroplast protein 12 OS=Fagus crenata GN=CP12 PE=2 SV=1 Length = 130
Score = 100 bits (248), Expect = 7e-20 Identities = 48/85 (56%), Positives = 64/85 (75%) Frame = +3
Query: 204 SLRLRFVAMATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQ 383 S+++R V+ A P ++DK+++SIK+AEE C D SGEC AAWDEVEE+SA +H R K+ Sbjct: 48 SMQVRPVS-AAPEKISDKVAESIKDAEEACAGDPASGECVAAWDEVEELSAAASHARDKK 106
Query: 384 SETKDPLEEFCKDAPEADECRVYED 458 + DPLEE+CKD PE +ECR YED Sbjct: 107 -KGSDPLEEYCKDNPETEECRTYED 130
>tr|A9PIU1|A9PIU1_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 127
Score = 99.8 bits (247), Expect = 9e-20 Identities = 52/101 (51%), Positives = 64/101 (63%) Frame = +3
Query: 156 GSGALQVSSVGPRPCPSLRLRFVAMATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWD 335 GSG +QV V A P +++K+ +SIKEAEE C D SGECAAAWD Sbjct: 42 GSGRVQVRPV--------------RAAPEGISEKVEKSIKEAEEACSGDAASGECAAAWD 87
Query: 336 EVEEISAEIAHKRVKQSETKDPLEEFCKDAPEADECRVYED 458 EVEE+SA +H + K+ + DPLEE+CKD PE DECR YED Sbjct: 88 EVEELSAAASHAKDKK-KGSDPLEEYCKDNPETDECRTYED 127
>tr|A9NL08|A9NL08_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 141
Score = 98.6 bits (244), Expect = 2e-19 Identities = 48/86 (55%), Positives = 64/86 (74%), Gaps = 4/86 (4%) Frame = +3
Query: 213 LRFVAMATPT----DMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVK 380 ++ VAM++PT ++++ + +SIK+A E C D+ SGECAA+WDEVEE+SA +H R K Sbjct: 57 IQVVAMSSPTPAKGNISEVVEESIKKAIETCAEDSTSGECAASWDEVEELSAARSHMREK 116
Query: 381 QSETKDPLEEFCKDAPEADECRVYED 458 + KDPLEEFCKD PE DECR YED Sbjct: 117 -DKAKDPLEEFCKDNPETDECRTYED 141
>tr|B6U3H3|B6U3H3_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 Length = 140
Score = 97.1 bits (240), Expect = 6e-19 Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%) Frame = +3
Query: 231 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 401 ATP +++DK+S+SIK+AEE C D G ECAAAWDEVEE+SA +H R +K++ DP Sbjct: 62 ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 121
Query: 402 LEEFCKDAPEADECRVYED 458 LE++CKD P+++ECR+Y++ Sbjct: 122 LEKYCKDNPDSEECRIYDN 140
>tr|B6SXI1|B6SXI1_MAIZE CP12-1 OS=Zea mays PE=2 SV=1 Length = 144
Score = 97.1 bits (240), Expect = 6e-19 Identities = 43/79 (54%), Positives = 62/79 (78%), Gaps = 3/79 (3%) Frame = +3
Query: 231 ATPTDMNDKLSQSIKEAEEVCVADN-GSGECAAAWDEVEEISAEIAHKR--VKQSETKDP 401 ATP +++DK+S+SIK+AEE C D G ECAAAWDEVEE+SA +H R +K++ DP Sbjct: 66 ATPPEISDKVSESIKQAEETCADDQKGDAECAAAWDEVEELSATASHARDSLKETNANDP 125
Query: 402 LEEFCKDAPEADECRVYED 458 LE++CKD P+++ECR+Y++ Sbjct: 126 LEKYCKDNPDSEECRIYDN 144
>tr|A9PHK5|A9PHK5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 127
Score = 95.5 bits (236), Expect = 2e-18 Identities = 44/76 (57%), Positives = 56/76 (73%) Frame = +3
Query: 231 ATPTDMNDKLSQSIKEAEEVCVADNGSGECAAAWDEVEEISAEIAHKRVKQSETKDPLEE 410 A P +++K+ +SIK+AE C D SGECAAAWDEVEE+SA +H + K+ + DPLEE Sbjct: 53 AAPDSISEKVEKSIKDAEAACSDDAASGECAAAWDEVEELSAAASHAKDKK-KGSDPLEE 111
Query: 411 FCKDAPEADECRVYED 458 +CKD PE DECR YED Sbjct: 112 YCKDNPETDECRTYED 127
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