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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956801
Clone id TST39A01NGRL0026_L02
Library
Length 585
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_L02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGGGGTTTCTGCAGGCCCTCTCTTCAGTTGACCCGCGAGTGCACCTTGCGTTTTTCCTGC
GTTTGCCTTCTTGTTGGGTCCTGCTGAGCCCCACATCTTTCTTCTAGTTTGCGGCTCGGT
TCATCATTCGGGCACTACTGTGTTCGTCTCTCAATGCGGAGCGTTCCGGGTCCTCTTCTG
TCTTGAACGGAAGCTTCACTTCCAAACGGGCAGTCTCTGCCAATTTTTTTCCATGGATGC
CTTATTCGCTTCCACACAATCGCACTCTTTTCATACGTGCAGTGAGGACATGTATGCTCG
TTCCTGCTACACCAAAATTTCATTCCTCCCAGCACAGGCCAAATTTTCTTTTAGGGTGGT
ATCATCATCTTCACTTTGGGGAGCTCTGGTGAAACTTCGATCCCTGCCTTTATCTGTTCG
CTGCTCCAGCAGCAATGAGGCTTTCATGAACAGTGGCCATGGTGGTGCTCATAGTGGCAA
CAATTGGAAGTCCAACCAGGATGACTACAAGTATCTAGAGGCTCAAGTAGTGGAAGCAGT
GAGCCTTTTACCTTCCCAAGGACATCTTTTCATGACCCTGGCTAA
■■Homology search results ■■ -
sp_hit_id Q1MRS4
Definition sp|Q1MRS4|HYPA_LAWIP Probable hydrogenase nickel incorporation protein hypA OS=Lawsonia intracellularis (strain PHE/MN1-00)
Align length 49
Score (bit) 32.7
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956801|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_L02, 5'
         (585 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1MRS4|HYPA_LAWIP Probable hydrogenase nickel incorporation p...    33   1.4  
sp|Q7SXZ1|PIGB_DANRE GPI mannosyltransferase 3 OS=Danio rerio GN...    32   2.3  
sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustila...    32   3.0  
sp|Q32MZ4|LRRF1_HUMAN Leucine-rich repeat flightless-interacting...    30   6.7  
sp|P51680|CCR4_MOUSE C-C chemokine receptor type 4 OS=Mus muscul...    30   8.8  

>sp|Q1MRS4|HYPA_LAWIP Probable hydrogenase nickel incorporation
           protein hypA OS=Lawsonia intracellularis (strain
           PHE/MN1-00) GN=hypA PE=3 SV=1
          Length = 118

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
 Frame = +2

Query: 305 CYTKIS-FLPAQAKFSFRVVSS-SSLWGALVKLRSLPLSVRCSSSNEAF 445
           CY +++  +P   +F+F++ +  +SL GA++++  +PL +RCS+    F
Sbjct: 32  CYGELTNIVPDSLQFAFKIFTEGTSLEGAILEIEKIPLMLRCSNCLSLF 80


>sp|Q7SXZ1|PIGB_DANRE GPI mannosyltransferase 3 OS=Danio rerio
           GN=pigb PE=2 SV=1
          Length = 536

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 208 GQSLPIFFHGCLI--RFHTIALFSYVQ*GHVCSFLLHQNF 321
           G  LP+  HGCL+  R HTI L + +    V S L H+ F
Sbjct: 303 GPHLPLVLHGCLLSTRKHTILLLTIIWTTAVYSLLAHKEF 342


>sp|Q4P3W3|DBP10_USTMA ATP-dependent RNA helicase DBP10 OS=Ustilago
            maydis GN=DBP10 PE=3 SV=1
          Length = 1154

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -3

Query: 169  PERSALRDEHSSARMMNRAAN*KKDVGLSRTQQEGKRRKNARCTRGSTEERACR 8
            P+R A +DE  SAR + +           R  +E +R KNAR ++  T  RA R
Sbjct: 1094 PKRQAAKDEVKSARQIQK----------DRELKEKRREKNARPSKSDTNRRAKR 1137


>sp|Q32MZ4|LRRF1_HUMAN Leucine-rich repeat flightless-interacting
           protein 1 OS=Homo sapiens GN=LRRFIP1 PE=1 SV=2
          Length = 808

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 14/59 (23%), Positives = 32/59 (54%)
 Frame = -2

Query: 209 PFGSEASVQDRRGPGTLRIERRTQ*CPNDEPSRKLEERCGAQQDPTRRQTQEKRKVHSR 33
           P G+E + Q+  GP T  ++ + +     EP  +  ++ G   D ++++T+ K+K + +
Sbjct: 522 PAGTEGNCQEATGPST--VDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKNKK 578


>sp|P51680|CCR4_MOUSE C-C chemokine receptor type 4 OS=Mus musculus
           GN=Ccr4 PE=2 SV=1
          Length = 360

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = -2

Query: 506 SHPGWTSNCCHYEHHHGHCS*KPHCCWSSEQIKAGIEVSPELXXXXXXXXXXXXXXXVLG 327
           S PG   + C+ EH+H +C  +     ++ ++ + +E++                   LG
Sbjct: 169 SLPGLLFSTCYTEHNHTYCKTQYSVNSTTWKVLSSLEIN------------VLGLLIPLG 216

Query: 326 GMKFWCSRNEHTCPHCTYEK 267
            M FW S    T  HC  EK
Sbjct: 217 IMLFWYSMIIRTLQHCKNEK 236
tr_hit_id A9RZY8
Definition tr|A9RZY8|A9RZY8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 24
Score (bit) 33.9
E-value 6.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956801|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_L02, 5'
         (585 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RZY8|A9RZY8_PHYPA Predicted protein OS=Physcomitrella paten...    34   6.9  
tr|Q0J193|Q0J193_ORYSJ Os09g0455400 protein OS=Oryza sativa subs...    33   9.0  
tr|A2Z201|A2Z201_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.0  
tr|Q4SAL1|Q4SAL1_TETNG Chromosome undetermined SCAF14682, whole ...    33   9.1  
tr|A9T7G7|A9T7G7_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.1  

>tr|A9RZY8|A9RZY8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179885 PE=4 SV=1
          Length = 306

 Score = 33.9 bits (76), Expect = 6.9
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +2

Query: 509 KYLEAQVVEAVSLLPSQGHLFMTL 580
           +YLEAQV++AVS++P  G L MTL
Sbjct: 63  EYLEAQVMDAVSMVPFHGKLLMTL 86


>tr|Q0J193|Q0J193_ORYSJ Os09g0455400 protein OS=Oryza sativa subsp.
           japonica GN=Os09g0455400 PE=4 SV=1
          Length = 511

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 184 KTEEDPERSALRDEHSSARMMNRAAN*KKDVGLSRTQQEGKRRKNARCTRGSTEERA 14
           K EED E S   ++    R   R+   KK     R+ +  KR+ N   + GS+EE A
Sbjct: 245 KAEEDSEGSYDSEDSMDRRKKKRSRRHKKSKRRGRSSRRKKRKSNDTASEGSSEEEA 301


>tr|A2Z201|A2Z201_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31635 PE=4 SV=1
          Length = 509

 Score = 33.5 bits (75), Expect = 9.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 184 KTEEDPERSALRDEHSSARMMNRAAN*KKDVGLSRTQQEGKRRKNARCTRGSTEERA 14
           K EED E S   ++    R   R+   KK     R+ +  KR+ N   + GS+EE A
Sbjct: 243 KAEEDSEGSYDSEDSMDRRKKKRSRRHKKSKRRGRSSRRKKRKSNDTASEGSSEEEA 299


>tr|Q4SAL1|Q4SAL1_TETNG Chromosome undetermined SCAF14682, whole
           genome shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00021396001 PE=4 SV=1
          Length = 243

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 8/39 (20%)
 Frame = -1

Query: 246 NKASMEKNWQRL--------PVWK*SFRSRQKRTRNAPH 154
           N+ S E+ W  +        PVW+  +R+RQ RTR+ PH
Sbjct: 27  NRISTEQRWAAIEVVSKGNNPVWRVLYRNRQNRTRSPPH 65


>tr|A9T7G7|A9T7G7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_89092 PE=4 SV=1
          Length = 724

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
 Frame = -1

Query: 447 MKASLLLEQRTDKGRDRSFTRAPQSEDDDTTLKENLACAGRNEILV*QE----------R 298
           ++ SL ++  +D  R  SFT   + + DD  +    AC G+ ++   +E           
Sbjct: 159 LECSLFMQWSSDYERVGSFTLLQKLKSDDHCMNNASACHGQKQVRHFEEGLVSRPVLALM 218

Query: 297 AYMSSLHV*KECDCVEANKAS 235
           A  S+LH+ ++CD +   KAS
Sbjct: 219 AINSNLHIDEDCDALLQPKAS 239