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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956821
Clone id TST39A01NGRL0026_L23
Library
Length 627
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_L23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAGATTGCCATAAAGGATAACTATGTCCGTGCAAATAGGTTCAAGTGTGAACTGAATTC
AGAACAGGTTGGTAGATTGATAAAGCTCTTCAGGCCCCTGGACTCCAGAGGTTTGCCAGA
GCCAAAGCCTTCTAAGGAGGCAAAGAAAGATTTCACTCCAAAAGGCAAGTTGCCACGGGG
GCCGCCACCTCGGTCTCTGCGCAACAGGGGGCCTCCACCTCGTTTTTCAGGTCCTGCTCC
TCCCAGAGAACGAGTCTACAAGGACTATGCGCCGCAGTACTCTAGGGAGCGCCATGCTTC
AGAAATTATCCCCCCTAGCTATGCCCTTGTTCCAGATGTGGCCCATGCAGAAGCAGAGTT
ATTAAGGCAGAGGCACCTCAGACAAGTCCAAGAAGAGGCTCTTGACAGGAGGGCTTATCT
ACTCGATCCTGTGGTTGAAGCTTCAATTGCTCGTAAACGGTACTTGGAGGATGTTTATTT
GGCGGAACAGCAAGCCTTGGCTAAAAGGCCTCTTTTACCTGAAGTTTACAGAGATTTGGA
GTACCAAAGAGAGGCCCCATATCGGGGATATGCAGATGGTTTGCATGCACTCCCTTCCGC
AGCTTTGCCTTATGATCCGCGGGGCTA
■■Homology search results ■■ -
sp_hit_id P71485
Definition sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A OS=Mycobacterium avium
Align length 79
Score (bit) 34.7
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956821|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_L23, 5'
         (627 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A OS=Mycobac...    35   0.41 
sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus GN...    35   0.41 
sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens GN...    34   0.70 
sp|O24496|GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasm...    31   4.5  
sp|A0LV02|CNPD_ACIC1 2',3'-cyclic-nucleotide 2'-phosphodiesteras...    31   4.5  
sp|P16846|UL23_HCMVA Tegument protein UL23 OS=Human cytomegalovi...    31   5.9  
sp|Q9UH65|SWP70_HUMAN Switch-associated protein 70 OS=Homo sapie...    30   7.7  
sp|P0C1G6|SWP70_BOVIN Switch-associated protein 70 OS=Bos taurus...    30   7.7  

>sp|P71485|EMBA_MYCAV Probable arabinosyltransferase A
           OS=Mycobacterium avium GN=embA PE=3 SV=1
          Length = 1108

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
 Frame = -3

Query: 280 VLRRIVLVDSFSGRSRT*KT--RWRPPVAQRPRWRPPWQLAFWSEIFL-------CLLRR 128
           VL  IV +     RSR   T   WR P+A   R+RP   LA W  + L        +L  
Sbjct: 213 VLTAIVALAVLDRRSRGGGTLINWRSPIAWLSRYRPGTHLANWRRVGLATWIADAAVLAT 272

Query: 127 LWLWQTSGVQGPEELYQST 71
           L LW   G    ++ Y  T
Sbjct: 273 LLLWHVVGATSSDDGYNLT 291


>sp|Q6AW69|CGNL1_MOUSE Cingulin-like protein 1 OS=Mus musculus
            GN=Cgnl1 PE=1 SV=2
          Length = 1298

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 16/35 (45%), Positives = 24/35 (68%)
 Frame = +2

Query: 452  RKRYLEDVYLAEQQALAKRPLLPEVYRDLEYQREA 556
            ++  L+D   AE++AL KR LL +  +DLEY+ EA
Sbjct: 1014 KEEELQDYQRAEEEALTKRQLLEQSLKDLEYELEA 1048


>sp|Q0VF96|CGNL1_HUMAN Cingulin-like protein 1 OS=Homo sapiens
            GN=CGNL1 PE=1 SV=1
          Length = 1302

 Score = 33.9 bits (76), Expect = 0.70
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +2

Query: 368  QRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDVYLAEQQALAKRPLLPEVYRDLEYQ 547
            QR L++   EA   R   +    E  +  +  L D   A+ +AL KR LL +  +DLEY+
Sbjct: 990  QRQLKEKTLEAEKSRLTAMKMQDEMRLMEEE-LRDYQRAQDEALTKRQLLEQTLKDLEYE 1048

Query: 548  REA 556
             EA
Sbjct: 1049 LEA 1051


>sp|O24496|GLO2C_ARATH Hydroxyacylglutathione hydrolase cytoplasmic
           OS=Arabidopsis thaliana GN=GLX2-2 PE=1 SV=2
          Length = 258

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/49 (40%), Positives = 26/49 (53%)
 Frame = -2

Query: 539 PNLCKLQVKEAF*PRLAVPPNKHPPSTVYEQLKLQPQDRVDKPSCQEPL 393
           PN  K+Q K A+  +         PST+ E+L+  P  RVDKP  QE L
Sbjct: 189 PNNGKIQQKLAWARQQRQADLPTIPSTLEEELETNPFMRVDKPEIQEKL 237


>sp|A0LV02|CNPD_ACIC1 2',3'-cyclic-nucleotide 2'-phosphodiesterase
           OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
           GN=Acel_1490 PE=3 SV=1
          Length = 491

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +2

Query: 296 ASEIIPPSYALVPDVAHAEAELLRQRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDV 475
           A  +  PS    PD A AEAE+   R   + +E+ L  R   LD   E   AR+R L ++
Sbjct: 34  AGNVRQPSGMSGPDAAAAEAEIREARSELERREQRLAEREARLDAEHERLAARERQLAEL 93


>sp|P16846|UL23_HCMVA Tegument protein UL23 OS=Human cytomegalovirus
           (strain AD169) GN=UL23 PE=3 SV=2
          Length = 284

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 220 RWRPPVAQRPRWRPPWQLAF-WSEIFLCLLRRLW 122
           RWRPP   RP W+P  ++A  W +    ++RR W
Sbjct: 14  RWRPPKTSRP-WKPGQRVALVWPKDRCLVIRRRW 46


>sp|Q9UH65|SWP70_HUMAN Switch-associated protein 70 OS=Homo sapiens
           GN=SWAP70 PE=1 SV=1
          Length = 585

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +2

Query: 341 AHAEAELLRQRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDVYLAEQQAL 499
           A    EL R++ +RQ  EE + +++  L+  ++    R R LED+YL  Q+AL
Sbjct: 385 ARFSTELEREKLIRQQMEEQVAQKSSELEQYLQ----RVRELEDMYLKLQEAL 433


>sp|P0C1G6|SWP70_BOVIN Switch-associated protein 70 OS=Bos taurus
           GN=SWAP70 PE=1 SV=1
          Length = 585

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +2

Query: 341 AHAEAELLRQRHLRQVQEEALDRRAYLLDPVVEASIARKRYLEDVYLAEQQAL 499
           A    EL R++ +RQ  EE + +++  L+  ++    R R LED+YL  Q+AL
Sbjct: 385 ARFSTELEREKLIRQQMEEQVAQKSSELEQYLQ----RVRELEDMYLKLQEAL 433
tr_hit_id B8LQS0
Definition tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 51
Score (bit) 48.5
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956821|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_L23, 5'
         (627 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea...    49   3e-04
tr|A7QX14|A7QX14_VITVI Chromosome chr14 scaffold_211, whole geno...    49   3e-04
tr|A7NYZ0|A7NYZ0_VITVI Chromosome chr6 scaffold_3, whole genome ...    44   0.010
tr|A5CAT2|A5CAT2_VITVI Putative uncharacterized protein OS=Vitis...    44   0.010
tr|B6UA70|B6UA70_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.018
tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea...    42   0.039
tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea...    42   0.039
tr|Q67WK6|Q67WK6_ORYSJ Os06g0227200 protein OS=Oryza sativa subs...    41   0.067
tr|B8B489|B8B489_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.067
tr|A3B9V7|A3B9V7_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.067
tr|B6SV62|B6SV62_MAIZE Rho GTPase activator OS=Zea mays PE=2 SV=1      37   0.74 
tr|B8Q897|B8Q897_ORYSI SKIP interacting protein 11 (Fragment) OS...    37   0.96 
tr|B8B5I6|B8B5I6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.96 
tr|Q84W28|Q84W28_ARATH Putative uncharacterized protein At2g3291...    37   1.3  
tr|Q69RJ1|Q69RJ1_ORYSJ Pleckstrin homology (PH) domain-containin...    37   1.3  
tr|Q5QLP4|Q5QLP4_ORYSJ Pleckstrin homology (PH) domain-containin...    37   1.3  
tr|Q0D3Z0|Q0D3Z0_ORYSJ Os07g0658300 protein OS=Oryza sativa subs...    37   1.3  
tr|O48774|O48774_ARATH Putative uncharacterized protein At2g3291...    37   1.3  
tr|A3BN12|A3BN12_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.3  
tr|B0DEY5|B0DEY5_LACBS Predicted protein OS=Laccaria bicolor (st...    37   1.3  
tr|A8U9P8|A8U9P8_9LACT Hydrolase, haloacid dehalogenase-like fam...    36   1.6  
tr|B6T8I6|B6T8I6_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.6  
tr|B6KNK1|B6KNK1_TOXGO Putative uncharacterized protein OS=Toxop...    35   3.7  
tr|B2RY19|B2RY19_MOUSE Cgnl1 protein OS=Mus musculus GN=Cgnl1 PE...    35   4.8  
tr|B2RSU6|B2RSU6_MOUSE Cingulin-like 1 OS=Mus musculus GN=Cgnl1 ...    35   4.8  
tr|A0Q9D0|A0Q9D0_MYCA1 Probable arabinosyltransferase C OS=Mycob...    35   4.8  
tr|Q6ZGT6|Q6ZGT6_ORYSJ Os02g0745600 protein OS=Oryza sativa subs...    35   4.8  
tr|A2X9K7|A2X9K7_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.8  
tr|B0DHU1|B0DHU1_LACBS Predicted protein OS=Laccaria bicolor (st...    34   8.1  
tr|A3LWR0|A3LWR0_PICST Predicted protein OS=Pichia stipitis GN=P...    34   8.1  

>tr|B8LQS0|B8LQS0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 394

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPL---DSRGLPEPKPSKEAK 145
           K+AIKDNY    +FK ELN+EQV  L++LF+P+   +SRG  + +P + ++
Sbjct: 208 KVAIKDNYYGKKKFKFELNAEQVKNLVQLFKPVPAQNSRGPRDSRPGRPSR 258


>tr|A7QX14|A7QX14_VITVI Chromosome chr14 scaffold_211, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00008906001
           PE=4 SV=1
          Length = 602

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRP--LDSRGLPEPKPSKEAKKD 151
           K AIKDNY + N+FK EL  EQV +L+KLFRP  + S+ LP   P +   ++
Sbjct: 225 KKAIKDNYDKTNKFKTELTMEQVKKLMKLFRPTEIHSKALPIHSPPRARARE 276


>tr|A7NYZ0|A7NYZ0_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024305001
           PE=4 SV=1
          Length = 386

 Score = 43.5 bits (101), Expect = 0.010
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPS 133
           K  IKDNY + N+F CELNS+QV  L KLF+   S+G P+ K S
Sbjct: 92  KKVIKDNYYKKNKFNCELNSDQVKNLCKLFQAA-SKG-PKSKDS 133


>tr|A5CAT2|A5CAT2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_005395 PE=4 SV=1
          Length = 669

 Score = 43.5 bits (101), Expect = 0.010
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPS 133
           K  IKDNY + N+F CELNS+QV  L KLF+   S+G P+ K S
Sbjct: 375 KKVIKDNYYKKNKFNCELNSDQVKNLCKLFQAA-SKG-PKSKDS 416


>tr|B6UA70|B6UA70_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 507

 Score = 42.7 bits (99), Expect = 0.018
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKP 130
           K AIK+NY    RF  ELNS+QV RL+ +F+P+D   LP+  P
Sbjct: 271 KHAIKENYSSKGRFTQELNSKQVQRLLAMFKPID---LPQSAP 310


>tr|B8LNW7|B8LNW7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 461

 Score = 41.6 bits (96), Expect = 0.039
 Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPL---DSR 109
           K AIKDNY   N+F+ ELN++QV +L +LFRP+   DSR
Sbjct: 172 KKAIKDNYDGKNKFRFELNAQQVKKLSELFRPVPRFDSR 210


>tr|A9NVJ6|A9NVJ6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 458

 Score = 41.6 bits (96), Expect = 0.039
 Identities = 22/39 (56%), Positives = 29/39 (74%), Gaps = 3/39 (7%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPL---DSR 109
           K AIKDNY   N+F+ ELN++QV +L +LFRP+   DSR
Sbjct: 169 KKAIKDNYDGKNKFRFELNAQQVKKLSELFRPVPRFDSR 207


>tr|Q67WK6|Q67WK6_ORYSJ Os06g0227200 protein OS=Oryza sativa subsp.
           japonica GN=P0425F05.13 PE=2 SV=1
          Length = 704

 Score = 40.8 bits (94), Expect = 0.067
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPSK 136
           K AI++NY   ++F  ELNS QV RLI LF   +S  +P+P P K
Sbjct: 342 KDAIRENYSAKSKFNPELNSRQVHRLIALF---ESVSVPQPAPQK 383


>tr|B8B489|B8B489_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_22240 PE=4 SV=1
          Length = 704

 Score = 40.8 bits (94), Expect = 0.067
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPSK 136
           K AI++NY   ++F  ELNS QV RLI LF   +S  +P+P P K
Sbjct: 342 KDAIRENYSAKSKFNPELNSRQVHRLIALF---ESVSVPQPAPQK 383


>tr|A3B9V7|A3B9V7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019829 PE=4 SV=1
          Length = 706

 Score = 40.8 bits (94), Expect = 0.067
 Identities = 22/45 (48%), Positives = 29/45 (64%)
 Frame = +2

Query: 2   KIAIKDNYVRANRFKCELNSEQVGRLIKLFRPLDSRGLPEPKPSK 136
           K AI++NY   ++F  ELNS QV RLI LF   +S  +P+P P K
Sbjct: 342 KDAIRENYSAKSKFNPELNSRQVHRLIALF---ESVSVPQPAPQK 383