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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956833
Clone id TST39A01NGRL0026_M11
Library
Length 582
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_M11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCGCCAGTCCGTGAGCAGCGAAGGCACTCCCGCCTCTACATCTTGACGAGCGACGGCTA
GCAGGAGTCTAGAGTCAAAGAATGTATTCTGCGGAGTTTTTTAACAGATGTAACATAACA
CTTCCAGATGCTCTTCTTCAAGGAGCTGGTCGTAGTCATGGAGGCAGATTCATACTTGCA
AAATCAAGGGATGATGATTCTTATAGACTGCCTTTGTCAAAGAGTATGCATCTGAGGCAT
TTAAAAGATTCTCCAAGGACCTCTTTAAGGAAAAGTAAAGGTATAATGAGGTCAGTAGCT
AGTGTATCATCTGCTGAGGACTCTGCAAATACGGAATATCTGGAGAACCAGCCCAAAGAA
GGTGCCTCGGGGTTGTATTTTGGGCAGCCAACACAAAAGGAGGAGGTGATCGCTATACGT
GAAAGTGCTGTACGAGCAAGTCTTATGAAGAAGCTAAGTGACATCAATCTTTATGGGCGC
CATCTGCAAAGACAGTTACGTGAAAAGGCAAGATGCCTTATTGAAGTGCAAAAGTGAACT
GGAAACCATGGAGTCTGATATCCAGATCCTTGCAAGGTTGGC
■■Homology search results ■■ -
sp_hit_id Q0BPL2
Definition sp|Q0BPL2|KUP_GRABC Probable potassium transport system protein kup OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
Align length 46
Score (bit) 30.8
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956833|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_M11, 5'
         (582 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0BPL2|KUP_GRABC Probable potassium transport system protein ...    31   5.1  
sp|Q662R6|VATE_BORGA V-type ATP synthase subunit E OS=Borrelia g...    30   6.7  
sp|Q15042|RB3GP_HUMAN Rab3 GTPase-activating protein catalytic s...    30   8.8  

>sp|Q0BPL2|KUP_GRABC Probable potassium transport system protein kup
           OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /
           CGDNIH1) GN=kup PE=3 SV=2
          Length = 640

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 500 RNCLCRWRP*RLMSLSFFIRLARTALSRIAITSSFCVGCPKYNPEA 363
           R  + RWR   L   SF  RL ++ + R+  T+ F  G P Y P A
Sbjct: 463 RLLMSRWRQDSLPLASFLARLPQSRILRVPGTAVFLTGNPDYVPGA 508


>sp|Q662R6|VATE_BORGA V-type ATP synthase subunit E OS=Borrelia
           garinii GN=atpE PE=3 SV=1
          Length = 199

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 364 ASGLYFGQPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQLREKARCLI 522
           ++ + F    + EE++A  E AV A   K   +IN Y RH     R+  R LI
Sbjct: 24  SNDIIFKAKKEAEEIVARAEEAVGALKAKSEKEINDYKRHALEASRQAIRDLI 76


>sp|Q15042|RB3GP_HUMAN Rab3 GTPase-activating protein catalytic
           subunit OS=Homo sapiens GN=RAB3GAP1 PE=1 SV=3
          Length = 981

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 94  EFFNRCNITLPDALLQGAGRSHGGRFI 174
           E F  C +  P+ L+ GAGR H GR I
Sbjct: 868 ERFVSCLLEQPEVLVTGAGRGHAGRII 894
tr_hit_id A7PRC0
Definition tr|A7PRC0|A7PRC0_VITVI Chromosome chr14 scaffold_26, whole genome shotgun sequence OS=Vitis vinifera
Align length 67
Score (bit) 32.3
E-value 0.065
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956833|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_M11, 5'
         (582 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PRC0|A7PRC0_VITVI Chromosome chr14 scaffold_26, whole genom...    32   0.065
tr|Q1M2Z4|Q1M2Z4_PLAAC Ampk protein (Fragment) OS=Platanus aceri...    31   0.15 
tr|A9RYN0|A9RYN0_PHYPA Predicted protein OS=Physcomitrella paten...    29   0.39 
tr|B6AIC7|B6AIC7_9CRYT Putative uncharacterized protein OS=Crypt...    36   1.8  
tr|Q6Z0Y8|Q6Z0Y8_ORYSJ Os02g0135900 protein OS=Oryza sativa subs...    35   2.4  
tr|B8AHD0|B8AHD0_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.4  
tr|A3A2X1|A3A2X1_ORYSJ Putative uncharacterized protein OS=Oryza...    35   2.4  

>tr|A7PRC0|A7PRC0_VITVI Chromosome chr14 scaffold_26, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022432001
           PE=4 SV=1
          Length = 317

 Score = 32.3 bits (72), Expect(2) = 0.065
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +1

Query: 322 SANTEYLENQPKEGASGLYFGQPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQLR 501
           S N    E+ P+E        QP   +E+  +   + R  L+KKLS+ N   R L+RQL 
Sbjct: 106 SDNENASEDSPEE-----LLDQPLGSDELKTLLVDSERTKLIKKLSEANQQNRILKRQLY 160

Query: 502 EKARCLI 522
            K   L+
Sbjct: 161 IKEDALV 167



 Score = 27.3 bits (59), Expect(2) = 0.065
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 497 YVKRQDALLKCKSELETMESDIQILARL 580
           Y+K +DAL+  KSEL  ME ++Q L  L
Sbjct: 160 YIK-EDALVNFKSELAVMELEVQALVSL 186


>tr|Q1M2Z4|Q1M2Z4_PLAAC Ampk protein (Fragment) OS=Platanus
           acerifolia GN=ampk PE=2 SV=1
          Length = 205

 Score = 31.2 bits (69), Expect(2) = 0.15
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +1

Query: 355 KEGASGLYFGQPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQLREKARCLI 522
           ++ +S  +  QP   + + ++   + R  L++KLS+ N + R L+RQL  K   L+
Sbjct: 99  EKDSSKEFLSQPLDGDGLKSLLADSERTKLIRKLSEANQHNRFLKRQLLIKEDALV 154



 Score = 27.3 bits (59), Expect(2) = 0.15
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 506 RQDALLKCKSELETMESDIQILARL 580
           ++DAL+  KSEL  +E +IQ L +L
Sbjct: 149 KEDALVNFKSELSVIELEIQALVKL 173


>tr|A9RYN0|A9RYN0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161880 PE=4 SV=1
          Length = 312

 Score = 28.9 bits (63), Expect(2) = 0.39
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +2

Query: 506 RQDALLKCKSELETMESDIQILARL 580
           +++AL+K +SEL  M+ ++Q+L R+
Sbjct: 155 KEEALVKTRSELSAMQMELQVLVRI 179



 Score = 28.1 bits (61), Expect(2) = 0.39
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 433 RASLMKKLSDINLYGRHLQRQLREKARCLIEVQ 531
           +  L+ KLS  N Y R LQ  LR+K   L++ +
Sbjct: 131 KLQLLNKLSVANQYIRQLQHDLRDKEEALVKTR 163


>tr|B6AIC7|B6AIC7_9CRYT Putative uncharacterized protein
           OS=Cryptosporidium muris RN66 GN=CMU_031090 PE=4 SV=1
          Length = 648

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +1

Query: 334 EYLENQPKEGASGLYFGQPTQKEEVIAIRESAVRASLMKKLSDINLYGRHLQRQLREKA 510
           EY E  P++ + G+ F + +  EE+I  +ES+   ++ K   D+NL    L R  R++A
Sbjct: 481 EYSEKSPQKSSEGIKFNE-SLIEEIITNKESSTPLTIEKATKDVNLKCSELTRSQRKRA 538


>tr|Q6Z0Y8|Q6Z0Y8_ORYSJ Os02g0135900 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0081C13.12 PE=4 SV=1
          Length = 306

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
 Frame = +1

Query: 316 EDSANTEYLENQPKEGAS--GLYFGQPTQK--------EEVIAIRESAVRASLMKKLSDI 465
           ED   +    + P E  S  G  +G P++         +E+ ++   + R+ L+KKLS+ 
Sbjct: 78  EDGPASSDSTSSPSEQTSDGGEVYGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEA 137

Query: 466 NLYGRHLQRQLREK 507
           N Y R L+RQL+ K
Sbjct: 138 NQYNRFLKRQLQMK 151


>tr|B8AHD0|B8AHD0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05763 PE=4 SV=1
          Length = 460

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
 Frame = +1

Query: 316 EDSANTEYLENQPKEGAS--GLYFGQPTQK--------EEVIAIRESAVRASLMKKLSDI 465
           ED   +    + P E  S  G  +G P++         +E+ ++   + R+ L+KKLS+ 
Sbjct: 232 EDGPASSDSTSSPSEQTSDGGEVYGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEA 291

Query: 466 NLYGRHLQRQLREK 507
           N Y R L+RQL+ K
Sbjct: 292 NQYNRFLKRQLQMK 305


>tr|A3A2X1|A3A2X1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005143 PE=4 SV=1
          Length = 463

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
 Frame = +1

Query: 316 EDSANTEYLENQPKEGAS--GLYFGQPTQK--------EEVIAIRESAVRASLMKKLSDI 465
           ED   +    + P E  S  G  +G P++         +E+ ++   + R+ L+KKLS+ 
Sbjct: 235 EDGPASSDSTSSPSEQTSDGGEVYGDPSENLNSRKLKSDELKSLLADSERSKLLKKLSEA 294

Query: 466 NLYGRHLQRQLREK 507
           N Y R L+RQL+ K
Sbjct: 295 NQYNRFLKRQLQMK 308