DK956835 |
Clone id |
TST39A01NGRL0026_M13 |
Library |
TST39 |
Length |
517 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_M13. 5' end sequence. |
Accession |
DK956835 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1769Contig1 |
Sequence |
GTGTTGCATGATATAATGTTGTTTCGTAACGTTGCCACCAAGCCGTGTCCTTTCAGGAAC ACATAATTTGATGAGACCTCATGCCCCATTATCATTATCACCTTTCATTTCATCGGATGT GTTCCATCTACAGATCCACACTCGAAATCTGGATCTGTAGATTACACCACTCCGATTCAA TGACAATACATTTTGCACTATGTCGTAGATGCTCTCCAATCATGTCGTCCCAAAGACCAT GGACTGTCACCATCACGTTCCCACCACACTATACCTCCAGCACATCACCTTTTTCTATGA AATTAGTATTATAGAAAATCATCATTTAGCTGTTTATTACATCAAAGAGGTCACTATCAT TCAAAAGAAGACCAACATCTGCTCACGTACCGTAAGACTTTCCCTCTTTTCCCTACTCGA CTTCTGGAGGGCTATTTCGCGTTTACTCCTGATTTTTATAAAAAGACAACACCTATATTT CTGGCTGAAGTTTGAAAAGAGTATAGCAAAGGTGATT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O48962 |
Definition |
sp|O48962|EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Arabidopsis thaliana |
Align length |
56 |
Score (bit) |
50.1 |
E-value |
6.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956835|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_M13, 5' (517 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O48962|EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delt... 50 6e-06 sp|Q9FTZ2|EBP_ORYSJ Probable 3-beta-hydroxysteroid-Delta(8),Delt... 39 0.011 sp|Q9EQK5|MVP_MOUSE Major vault protein OS=Mus musculus GN=Mvp P... 32 2.3 sp|Q05041|HNFAA_XENLA Hepatocyte nuclear factor 1-alpha-A OS=Xen... 30 5.1 sp|Q6E0V4|CYB_PARGO Cytochrome b OS=Paraspadella gotoi GN=mt:Cyt... 30 5.1 sp|Q5ZJK1|THOC5_CHICK THO complex subunit 5 homolog OS=Gallus ga... 30 6.8 sp|Q65UX5|PYRR_MANSM Bifunctional protein pyrR OS=Mannheimia suc... 30 6.8 sp|Q62667|MVP_RAT Major vault protein OS=Rattus norvegicus GN=Mv... 30 6.8 sp|Q03497|STE20_YEAST Serine/threonine-protein kinase STE20 OS=S... 30 8.8 sp|Q9CLL7|PYRR_PASMU Bifunctional protein pyrR OS=Pasteurella mu... 30 8.8
>sp|O48962|EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Arabidopsis thaliana GN=At1g20050 PE=2 SV=1 Length = 223
Score = 50.1 bits (118), Expect = 6e-06 Identities = 27/56 (48%), Positives = 36/56 (64%) Frame = +1
Query: 349 GHYHSKEDQHLLTYRKTFPLFPTRLLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 G +K D+ L+ + TF +LEGYF F+P+F+K T +LAEV KEYSKGD Sbjct: 48 GRKKAKLDKLLMCWW-TFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGD 102
>sp|Q9FTZ2|EBP_ORYSJ Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1 Length = 219
Score = 39.3 bits (90), Expect = 0.011 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 ++EG F F P+F+ P + EV KEYSKGD Sbjct: 75 IIEGTFVFAPNFFSNQNPSYFDEVWKEYSKGD 106
>sp|Q9EQK5|MVP_MOUSE Major vault protein OS=Mus musculus GN=Mvp PE=2 SV=3 Length = 861
Score = 31.6 bits (70), Expect = 2.3 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +1
Query: 268 TIPPAHHLFL*N*YYRKSSFSCLLHQRGHYHSKE-DQHLLTYRKTFPLFPTRLLE 429 T+PP H+ + N R + S L G + DQ + + FPL+P LLE Sbjct: 52 TVPPRHYCIVANPVSRDAQSSVLFDVTGQVRLRHADQEIRLAQDPFPLYPGELLE 106
>sp|Q05041|HNFAA_XENLA Hepatocyte nuclear factor 1-alpha-A OS=Xenopus laevis GN=hnf1-A PE=2 SV=1 Length = 605
Score = 30.4 bits (67), Expect = 5.1 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +3
Query: 159 RLHHSDSMTIHFALCRRCSPIMSSQRPWTVTITFPPHYTSSTSP 290 +L + DS +H LC R SPI TV+ HY +S+SP Sbjct: 541 QLQNQDSSILHLPLCHRLSPIP------TVSSASLVHYHNSSSP 578
>sp|Q6E0V4|CYB_PARGO Cytochrome b OS=Paraspadella gotoi GN=mt:Cyt-b PE=3 SV=1 Length = 378
Score = 30.4 bits (67), Expect = 5.1 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = +3
Query: 102 LSFHRMCSIYRSTLEIWICRLHHSDSMTIHFALCRRC 212 LSF +C I R E WI RL H++ + F +C C Sbjct: 63 LSFESVCHILRDVNEGWIIRLVHANGASFFF-ICLYC 98
>sp|Q5ZJK1|THOC5_CHICK THO complex subunit 5 homolog OS=Gallus gallus GN=THOC5 PE=2 SV=1 Length = 698
Score = 30.0 bits (66), Expect = 6.8 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = +2
Query: 209 MLSNHVVPKTMDCHHHVPTTLYLQHITFFY--EISIIENHHLAVYYIKEVTIIQKKTNI 379 ML H + T+D L H+TF+Y ++I+ HL YY+ + I+ KT + Sbjct: 339 MLKRHPLSVTVDLKCKDENVL---HLTFYYLMNLNIMTVLHLTFYYLMNLNIMTVKTKV 394
>sp|Q65UX5|PYRR_MANSM Bifunctional protein pyrR OS=Mannheimia succiniciproducens (strain MBEL55E) GN=pyrR PE=3 SV=1 Length = 179
Score = 30.0 bits (66), Expect = 6.8 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 7/49 (14%) Frame = +2
Query: 347 EVTIIQKKTNIC-------SRTVRLSLFSLLDFWRAISRLLLIFIKRQH 472 E +Q KT I RT+R +L +L+DF RA L+IF+ R H Sbjct: 91 EFISVQNKTVILIDDVLFTGRTIRAALDALVDFGRAAKVELVIFVDRGH 139
>sp|Q62667|MVP_RAT Major vault protein OS=Rattus norvegicus GN=Mvp PE=1 SV=4 Length = 861
Score = 30.0 bits (66), Expect = 6.8 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = +1
Query: 268 TIPPAHHLFL*N*YYRKSSFSCLLHQRGHYHSKE-DQHLLTYRKTFPLFPTRLLE 429 T+PP H+ + N R + S L G + DQ + + FPL+P +LE Sbjct: 52 TVPPRHYCIVANPVSRDTQSSVLFDITGQVRLRHADQEIRLAQDPFPLYPGEVLE 106
>sp|Q03497|STE20_YEAST Serine/threonine-protein kinase STE20 OS=Saccharomyces cerevisiae GN=STE20 PE=1 SV=1 Length = 939
Score = 29.6 bits (65), Expect = 8.8 Identities = 23/73 (31%), Positives = 35/73 (47%) Frame = +2
Query: 23 FVTLPPSRVLSGTHNLMRPHAPLSLSPFISSDVFHLQIHTRNLDL*ITPLRFNDNTFCTM 202 F + S V+SG + M PH+ + + S + I+T N ITP DNTF T+ Sbjct: 94 FTRVSSSSVISGMSSSMSPHSNIDETK--SLEAVTPNINTSN----ITPDHSADNTFSTI 147
Query: 203 S*MLSNHVVPKTM 241 + S+H T+ Sbjct: 148 NASESDHQFNDTL 160
>sp|Q9CLL7|PYRR_PASMU Bifunctional protein pyrR OS=Pasteurella multocida GN=pyrR PE=3 SV=1 Length = 181
Score = 29.6 bits (65), Expect = 8.8 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = +2
Query: 386 RTVRLSLFSLLDFWRAISRLLLIFIKRQH 472 RT+R +L +L+DF RA L+IF+ R H Sbjct: 111 RTIRAALDALVDFGRAAKIELVIFVDRGH 139
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7XY75 |
Definition |
tr|A7XY75|A7XY75_SOLTU Putative C-8,7 sterol isomerase OS=Solanum tuberosum |
Align length |
32 |
Score (bit) |
59.3 |
E-value |
1.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956835|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_M13, 5' (517 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7XY75|A7XY75_SOLTU Putative C-8,7 sterol isomerase OS=Solanu... 59 1e-07 tr|A9P206|A9P206_PICSI Putative uncharacterized protein OS=Picea... 52 2e-05 tr|A9P0T7|A9P0T7_PICSI Putative uncharacterized protein OS=Picea... 52 2e-05 tr|A7NZR4|A7NZR4_VITVI Chromosome chr6 scaffold_3, whole genome ... 50 5e-05 tr|Q8LDC3|Q8LDC3_ARATH C-8,7 sterol isomerase OS=Arabidopsis tha... 50 7e-05 tr|Q0WRA8|Q0WRA8_ARATH C-8,7 sterol isomerase OS=Arabidopsis tha... 50 7e-05 tr|Q2TU57|Q2TU57_MAIZE Sterol-8,7-isomerase OS=Zea mays PE=2 SV=1 47 4e-04 tr|B6TIR9|B6TIR9_MAIZE 3-beta-hydroxysteroid-delta-isomerase OS=... 47 4e-04 tr|B6T8J7|B6T8J7_MAIZE 3-beta-hydroxysteroid-delta-isomerase OS=... 47 4e-04 tr|A3RD20|A3RD20_HORVU C-8,7-sterol isomerase OS=Hordeum vulgare... 46 0.001 tr|A9SKY9|A9SKY9_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.004 tr|B8ACS4|B8ACS4_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.12 tr|Q1VU52|Q1VU52_9FLAO Putative uncharacterized protein OS=Psych... 35 1.7 tr|A9TIX2|A9TIX2_PHYPA Predicted protein OS=Physcomitrella paten... 33 6.5
>tr|A7XY75|A7XY75_SOLTU Putative C-8,7 sterol isomerase OS=Solanum tuberosum GN=SI1 PE=2 SV=1 Length = 221
Score = 59.3 bits (142), Expect = 1e-07 Identities = 25/32 (78%), Positives = 30/32 (93%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 +LEGYF FTPDFY+KT+P++LAEV KEYSKGD Sbjct: 75 VLEGYFVFTPDFYQKTSPVYLAEVWKEYSKGD 106
>tr|A9P206|A9P206_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 215
Score = 52.0 bits (123), Expect = 2e-05 Identities = 22/32 (68%), Positives = 27/32 (84%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 +LEGYF F+P+FYK +P +LAEV KEYSKGD Sbjct: 71 ILEGYFVFSPNFYKLNSPFYLAEVWKEYSKGD 102
>tr|A9P0T7|A9P0T7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 214
Score = 52.0 bits (123), Expect = 2e-05 Identities = 22/32 (68%), Positives = 27/32 (84%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 +LEGYF F+P+FYK +P +LAEV KEYSKGD Sbjct: 71 ILEGYFVFSPNFYKLNSPFYLAEVWKEYSKGD 102
>tr|A7NZR4|A7NZR4_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024612001 PE=4 SV=1 Length = 222
Score = 50.4 bits (119), Expect = 5e-05 Identities = 22/32 (68%), Positives = 26/32 (81%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 +LEGYF F+P+FYK T +LAEV KEYSKGD Sbjct: 75 ILEGYFVFSPEFYKDKTACYLAEVWKEYSKGD 106
>tr|Q8LDC3|Q8LDC3_ARATH C-8,7 sterol isomerase OS=Arabidopsis thaliana PE=2 SV=1 Length = 223
Score = 50.1 bits (118), Expect = 7e-05 Identities = 27/56 (48%), Positives = 36/56 (64%) Frame = +1
Query: 349 GHYHSKEDQHLLTYRKTFPLFPTRLLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 G +K D+ L+ + TF +LEGYF F+P+F+K T +LAEV KEYSKGD Sbjct: 48 GRKKAKLDKLLMCWW-TFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGD 102
>tr|Q0WRA8|Q0WRA8_ARATH C-8,7 sterol isomerase OS=Arabidopsis thaliana GN=At1g20050 PE=2 SV=1 Length = 223
Score = 50.1 bits (118), Expect = 7e-05 Identities = 27/56 (48%), Positives = 36/56 (64%) Frame = +1
Query: 349 GHYHSKEDQHLLTYRKTFPLFPTRLLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 G +K D+ L+ + TF +LEGYF F+P+F+K T +LAEV KEYSKGD Sbjct: 48 GRKKAKLDKLLMCWW-TFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGD 102
>tr|Q2TU57|Q2TU57_MAIZE Sterol-8,7-isomerase OS=Zea mays PE=2 SV=1 Length = 221
Score = 47.4 bits (111), Expect = 4e-04 Identities = 21/32 (65%), Positives = 24/32 (75%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 ++EG F FTPDF+KK P F EV KEYSKGD Sbjct: 76 MIEGPFVFTPDFFKKENPNFFDEVWKEYSKGD 107
>tr|B6TIR9|B6TIR9_MAIZE 3-beta-hydroxysteroid-delta-isomerase OS=Zea mays PE=2 SV=1 Length = 221
Score = 47.4 bits (111), Expect = 4e-04 Identities = 21/32 (65%), Positives = 24/32 (75%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 ++EG F FTPDF+KK P F EV KEYSKGD Sbjct: 76 MIEGPFVFTPDFFKKENPNFFDEVWKEYSKGD 107
>tr|B6T8J7|B6T8J7_MAIZE 3-beta-hydroxysteroid-delta-isomerase OS=Zea mays PE=2 SV=1 Length = 221
Score = 47.4 bits (111), Expect = 4e-04 Identities = 21/32 (65%), Positives = 24/32 (75%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 ++EG F FTPDF+KK P F EV KEYSKGD Sbjct: 76 MIEGPFVFTPDFFKKENPNFFDEVWKEYSKGD 107
>tr|A3RD20|A3RD20_HORVU C-8,7-sterol isomerase OS=Hordeum vulgare PE=2 SV=1 Length = 216
Score = 45.8 bits (107), Expect = 0.001 Identities = 21/32 (65%), Positives = 24/32 (75%) Frame = +1
Query: 421 LLEGYFAFTPDFYKKTTPIFLAEV*KEYSKGD 516 L+EG F FTP F+ KT+P F EV KEYSKGD Sbjct: 71 LIEGPFVFTPGFFTKTSPNFFDEVWKEYSKGD 102
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