DK956838 |
Clone id |
TST39A01NGRL0026_M16 |
Library |
TST39 |
Length |
678 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_M16. 5' end sequence. |
Accession |
DK956838 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL277Contig1 |
Sequence |
CTCTACCGCTATGGCGAGCTCACTTCTGTCGGCGAGGCCACACCTCTCGTCGTCTTTCTG TTGCCCCACCTCGCAGCTTTGTATTTCCAGCAGCGGAAGCACTTTCGTCTCCATCGCGCA TTTCAAGCAAGAGTCGCCCCTTTCTTCCCTACAGAGCAAGGCTGAGAGTGCTGGATTCCT TCCTGTAGAGTGCTCATCGCGGCCTCAGAAGAAATGCACGGCTCACCATAATAAGACTCG TCCCAAGAAGCACAACCCTTCCGACAAGAACCGCAAGCCGGCAGTGTATCCCCCGTTCCC TGATCCCCCCCCTGCTGTTGTCCTCGGCTGGGGTGACGAAGATGATGATGATGATGATGC TTCTCCTGCCTCCGCTCCTGCTCCCTCTGCAGCTGAGCCTGCGGTAGTGGGTGCTTAGTG GGTGATCAAAGAAACATGATCAATCATACTGGTGGCAGACATTCACATAGGGAGGAGACA TGCCTGCTCATGGTCTGATGCTGAGGGTGCGTTCAAATCATTACTTTTCCTGGGTAACTT TAGTTGCTACAGATTACTTGTAACTGTTGACTTGTCTGTAATTGCCTACTCCAGTTTGGG ATATGATGTCCTTTTGGTCTTCCAGTAAATTAAAATGAAATTTTTTATTTAATTGTTCAA AAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P11892 |
Definition |
sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum |
Align length |
54 |
Score (bit) |
59.7 |
E-value |
1.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956838|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_M16, 5' (658 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pi... 60 1e-08 sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=... 52 3e-06 sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=... 47 9e-05 sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=... 34 0.78 sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 5... 33 1.3 sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella multo... 32 3.0 sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis P... 32 3.0 sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis P... 32 3.0 sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 pr... 32 3.9 sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana G... 32 3.9 sp|P11370|ENV2_MOUSE Retrovirus-related Env polyprotein from Fv-... 31 5.0 sp|Q8HXL3|WDR62_PIG WD repeat-containing protein 62 OS=Sus scrof... 31 6.6 sp|P31041|CD28_MOUSE T-cell-specific surface glycoprotein CD28 O... 31 6.6
>sp|P11892|PSRP6_PEA 50S ribosomal protein 6, chloroplastic OS=Pisum sativum GN=PSRP6 PE=3 SV=1 Length = 104
Score = 59.7 bits (143), Expect = 1e-08 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 6/54 (11%) Frame = +2
Query: 134 SPLSSLQSKA------ESAGFLPVECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 277 +P SSL++KA + G L +ECSSRPQKK TAHH KTRP+K SD+NRK Sbjct: 15 APNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRK 68
>sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1 Length = 106
Score = 52.0 bits (123), Expect = 3e-06 Identities = 23/31 (74%), Positives = 24/31 (77%) Frame = +2
Query: 185 VECSSRPQKKCTAHHNKTRPKKHNPSDKNRK 277 +ECSSRPQKK TAHH KTRPKK P D RK Sbjct: 38 IECSSRPQKKSTAHHRKTRPKKTQPWDIKRK 68
>sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1 Length = 116
Score = 47.0 bits (110), Expect = 9e-05 Identities = 20/26 (76%), Positives = 22/26 (84%) Frame = +2
Query: 173 GFLPVECSSRPQKKCTAHHNKTRPKK 250 G + +ECSSRPQKK TAHH KTRPKK Sbjct: 41 GVITIECSSRPQKKGTAHHMKTRPKK 66
>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=TPRXL PE=2 SV=1 Length = 257
Score = 33.9 bits (76), Expect = 0.78 Identities = 26/90 (28%), Positives = 41/90 (45%) Frame = +2
Query: 2 STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 181 S++ +SS S+ P SSS P+S SSS S+ S ++ S SS S + S+ Sbjct: 71 SSSPSSSHSSSSPSSSSSTSSPSSS---SSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSS 127
Query: 182 PVECSSRPQKKCTAHHNKTRPKKHNPSDKN 271 P SS P ++ + +PS + Sbjct: 128 PSSSSSSPSSSSSSSSSSPSSSSSSPSSSS 157
>sp|Q6NRK3|ANR56_XENLA Ankyrin repeat domain-containing protein 56 OS=Xenopus laevis GN=ankrd56 PE=2 SV=1 Length = 813
Score = 33.1 bits (74), Expect = 1.3 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 14/87 (16%) Frame = +2
Query: 2 STAMASSLLSARPH--------LSSSFCCPTSQLCIS----SSGSTFVSIAHFKQESPLS 145 +T +S ++RPH LSSSF P S ++ +S S S + ++++P S Sbjct: 193 NTRQSSFTSTSRPHNHSLSSNNLSSSFSSPESPGLVAKPYNASPSPAGSSPNIREQTPKS 252
Query: 146 SLQSKAESAGFLPVECSSRPQKK--CT 220 SKA +A F+ V C+ +++ CT Sbjct: 253 QSLSKAANAAFVSVTCTDIKEQREGCT 279
>sp|Q9CMZ1|Y659_PASMU UPF0192 protein PM0659 OS=Pasteurella multocida GN=PM0659 PE=3 SV=1 Length = 1905
Score = 32.0 bits (71), Expect = 3.0 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%) Frame = +2
Query: 104 FVSIAHFKQE-SPLSSLQSKAESAGFLPVE 190 F S+AHFKQE +P+ L S ES FLP++ Sbjct: 588 FSSLAHFKQELAPVMYLVSTQESLSFLPID 617
>sp|Q91431|NF7O_XENLA Nuclear factor 7, ovary OS=Xenopus laevis PE=2 SV=1 Length = 610
Score = 32.0 bits (71), Expect = 3.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2
Query: 50 SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 229 SSF CP + I+ T + L++L KA PVE +RP +KC+ H Sbjct: 178 SSFACPECKESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 229
Query: 230 NKTR 241 + + Sbjct: 230 ERLK 233
>sp|Q92021|NF7B_XENLA Nuclear factor 7, brain OS=Xenopus laevis PE=1 SV=1 Length = 609
Score = 32.0 bits (71), Expect = 3.0 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = +2
Query: 50 SSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFLPVECSSRPQKKCTAHH 229 SSF CP + I+ T + L++L KA PVE +RP +KC+ H Sbjct: 177 SSFACPECRESITDRKYTINRV--------LANLAKKAACTPVTPVEKKTRPLEKCSEHD 228
Query: 230 NKTR 241 + + Sbjct: 229 ERLK 232
>sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens GN=TNRC18 PE=1 SV=3 Length = 2968
Score = 31.6 bits (70), Expect = 3.9 Identities = 27/89 (30%), Positives = 40/89 (44%) Frame = +2
Query: 2 STAMASSLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAGFL 181 S++ +SS S+ SSS +S SSS S+ S + ++S SS A + Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692
Query: 182 PVECSSRPQKKCTAHHNKTRPKKHNPSDK 268 P ++ P K T K RP H+P K Sbjct: 2693 PSAQAALPTK-ATKQAGKARPSAHSPGKK 2720
>sp|Q9M391|ATX3H_ARATH Ataxin-3 homolog OS=Arabidopsis thaliana GN=At3g54130 PE=2 SV=1 Length = 280
Score = 31.6 bits (70), Expect = 3.9 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%) Frame = +2
Query: 20 SLLSARPHLSSSFCCPTSQLCISSSGSTFVSIAHFKQESPLSSLQSKAESAG-FLPVECS 196 SLL+A HLS + + S F+ +F QE P+SS + S G +L E + Sbjct: 142 SLLAAPQHLSKFYLSAFLDSLKGAGWSIFIVKGNFPQECPMSSSSEASNSFGQWLSPEDA 201
Query: 197 SRPQKKCTAHHNKTRPKKHN 256 R +K T+ + R K+ N Sbjct: 202 ERIRKN-TSSGSSARNKRSN 220
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SG03 |
Definition |
tr|A9SG03|A9SG03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
53 |
Score (bit) |
60.8 |
E-value |
7.0e-08 |
Report |
|