DK956863 |
Clone id |
TST39A01NGRL0026_N18 |
Library |
TST39 |
Length |
548 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_N18. 5' end sequence. |
Accession |
DK956863 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL376Contig1 |
Sequence |
GAATTCTGTAGTGCCGAGGAATAGGACAAACCCCCGCAATGGGGGGCTTGACGATGATAG TATGGCGTTTGAGACGAGTCCCGGGGTGGAAGTATACAGCACGTTCGACAGCATGGGCAT TCGAGATGAGCTTCTTCGTGGAATCTATGCCTATGGTTTTGAAAAACCTTCAGCTATTCA GCAGCGTGCCATACGGCCCATCATCCAGAATCGTGATGTCATAGCGCAGGCCCAGTCTGG TACTGGGAAGACTTCCATGATTGCCCTTGCTGTGTGCCAAATTATCGACACAACTGTTAG AGAGGTGCAGGCTTTAATCCTATCTCCGACTAGAGAGCTGGCAGCTCAGACTGAAAAGGT TATTTTAGCCATTGGTGATTATATAAATGTGCGGGCCCATTCTTGCATTGGTGGTAAAAA CATTGGGGAGGATATAAGAAAGCTTGAGAACGGTGTCCATGTGGTCTCTGGAACGCCAGG AAGGGTTTATGACATGATAAAAAGGAGGACTTTAGGAACAAGGGCCATGAAGCTTCTTGT CCTTGATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q10I26 |
Definition |
sp|Q10I26|RH34_ORYSJ DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica |
Align length |
169 |
Score (bit) |
260.0 |
E-value |
3.0e-69 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NUU4 |
Definition |
tr|A9NUU4|A9NUU4_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
177 |
Score (bit) |
263.0 |
E-value |
4.0e-69 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956863|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0026_N18, 5' (548 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NUU4|A9NUU4_PICSI Putative uncharacterized protein OS=Picea... 263 4e-69 tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whol... 262 1e-68 tr|B7EMG9|B7EMG9_ORYSJ cDNA clone:J033052B21, full insert sequen... 260 4e-68 tr|A3AJN1|A3AJN1_ORYSJ Putative uncharacterized protein OS=Oryza... 260 4e-68 tr|A2ZVV2|A2ZVV2_ORYSJ Putative uncharacterized protein OS=Oryza... 260 4e-68 tr|B8AKV8|B8AKV8_ORYSI Putative uncharacterized protein OS=Oryza... 258 1e-67 tr|Q2MJJ9|Q2MJJ9_MAIZE Putative RH2 protein (RNA helicase 2) (Pu... 254 3e-66 tr|B5AKW1|B5AKW1_PENAM eIF-4A OS=Pennisetum americanum PE=2 SV=1 252 8e-66 tr|A9TNS6|A9TNS6_PHYPA Predicted protein OS=Physcomitrella paten... 251 2e-65 tr|O65879|O65879_PEA Translation initiation factor OS=Pisum sati... 247 3e-64 tr|A8DX61|A8DX61_MEDSA DH OS=Medicago sativa PE=2 SV=1 247 3e-64 tr|A9U4K0|A9U4K0_PHYPA Predicted protein OS=Physcomitrella paten... 247 3e-64 tr|A5C5V5|A5C5V5_VITVI Putative uncharacterized protein OS=Vitis... 240 4e-62 tr|A8JBN7|A8JBN7_CHLRE Eukaryotic initiation factor OS=Chlamydom... 233 6e-60 tr|A8D930|A8D930_9GENT ATP-dependent DEAD-box helicase OS=Apocyn... 230 4e-59 tr|A2WT17|A2WT17_ORYSI Putative uncharacterized protein OS=Oryza... 226 5e-58 tr|A4S618|A4S618_OSTLU Predicted protein OS=Ostreococcus lucimar... 225 1e-57 tr|Q00XK3|Q00XK3_OSTTA Putative nicotiana eukaryotic (ISS) OS=Os... 223 5e-57 tr|B3SAG4|B3SAG4_TRIAD DEAD box ATP-dependent RNA helicase OS=Tr... 218 1e-55 tr|B7QER9|B7QER9_IXOSC DEAD box ATP-dependent RNA helicase, puta... 218 2e-55 tr|B6PI66|B6PI66_BRAFL Putative uncharacterized protein (Fragmen... 218 2e-55 tr|B6MJV0|B6MJV0_BRAFL Putative uncharacterized protein OS=Branc... 218 2e-55 tr|Q0PZE7|Q0PZE7_BOMMO EIF4AIII protein OS=Bombyx mori PE=2 SV=1 217 3e-55 tr|A8WW00|A8WW00_CAEBR Putative uncharacterized protein OS=Caeno... 216 5e-55 tr|Q16GE2|Q16GE2_AEDAE DEAD box ATP-dependent RNA helicase OS=Ae... 216 8e-55 tr|A8P212|A8P212_BRUMA ATP-dependent helicase DDX48, putative (F... 216 8e-55 tr|Q7PQQ2|Q7PQQ2_ANOGA AGAP003089-PA OS=Anopheles gambiae GN=AGA... 215 1e-54 tr|O44781|O44781_CAEEL Putative uncharacterized protein OS=Caeno... 214 2e-54 tr|Q9BL61|Q9BL61_CAEEL Putative uncharacterized protein OS=Caeno... 214 3e-54 tr|A8WZ62|A8WZ62_CAEBR Putative uncharacterized protein OS=Caeno... 214 3e-54
>tr|A9NUU4|A9NUU4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 408
Score = 263 bits (672), Expect = 4e-69 Identities = 138/177 (77%), Positives = 151/177 (85%) Frame = +2
Query: 17 RNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXX 196 RNR N RN D+++ FETSPGVEV S+FD MGIRD+LLRGIY YGFEKPS Sbjct: 9 RNRNNGRNPD-GDENLIFETSPGVEVISSFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVM 67
Query: 197 XXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIG 376 RDVIAQAQSGTGKTSMIALAVCQIIDT++REVQALI+SPTRELAAQTEKVILAIG Sbjct: 68 PIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIG 127
Query: 377 DYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 D+INV+AH+CIGGK+IGEDIRKLE GVHVVSGTPGRV DMIKRRTL TRA+KLLVLD Sbjct: 128 DFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLD 184
>tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037338001 PE=4 SV=1 Length = 415
Score = 262 bits (669), Expect = 1e-68 Identities = 132/181 (72%), Positives = 151/181 (83%) Frame = +2
Query: 5 SVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXX 184 SVVP NR RNG +DD+ + FET+ GVE +FD MGI+D+LLRGIYAYGFEKPS Sbjct: 8 SVVPANRGGRRNGAVDDEKLVFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFEKPSAIQQ 67
Query: 185 XXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVI 364 RDVIAQAQSGTGKTSMIAL VCQ++DT+ REVQALILSPTRELA+QTEKVI Sbjct: 68 RAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSNREVQALILSPTRELASQTEKVI 127
Query: 365 LAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVL 544 LAIGD+IN++AH+CIGGK++GEDIRKLE GVH+VSGTPGRV DMIKRRTL TRA+KLLVL Sbjct: 128 LAIGDFINIQAHACIGGKSVGEDIRKLEYGVHIVSGTPGRVCDMIKRRTLRTRAIKLLVL 187
Query: 545 D 547 D Sbjct: 188 D 188
>tr|B7EMG9|B7EMG9_ORYSJ cDNA clone:J033052B21, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 404
Score = 260 bits (664), Expect = 4e-68 Identities = 129/169 (76%), Positives = 148/169 (87%) Frame = +2
Query: 41 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 220 G +DD+++ FETSPGVEV S+FD MGIRD+LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 221 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 400 IAQAQSGTGKTSMI+L+VCQI+DT VREVQALILSPTRELAAQTE+V+LAIGD+IN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131
Query: 401 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LD Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD 180
>tr|A3AJN1|A3AJN1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_011003 PE=3 SV=1 Length = 394
Score = 260 bits (664), Expect = 4e-68 Identities = 129/169 (76%), Positives = 148/169 (87%) Frame = +2
Query: 41 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 220 G +DD+++ FETSPGVEV S+FD MGIR++LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 221 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 400 IAQAQSGTGKTSMI+L+VCQI+DT VREVQALILSPTRELAAQTE+V+LAIGDYIN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131
Query: 401 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LD Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD 180
>tr|A2ZVV2|A2ZVV2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_002674 PE=3 SV=1 Length = 394
Score = 260 bits (664), Expect = 4e-68 Identities = 129/169 (76%), Positives = 148/169 (87%) Frame = +2
Query: 41 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 220 G +DD+++ FETSPGVEV S+FD MGIRD+LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 221 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 400 IAQAQSGTGKTSMI+L+VCQI+DT VREVQALILSPTRELAAQTE+V+LAIGD+IN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131
Query: 401 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LD Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD 180
>tr|B8AKV8|B8AKV8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_12293 PE=4 SV=1 Length = 404
Score = 258 bits (659), Expect = 1e-67 Identities = 128/169 (75%), Positives = 148/169 (87%) Frame = +2
Query: 41 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 220 G +DD+++ FETSPGVEV S+FD MGIR++LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 221 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 400 IAQAQSGTGKTSMI+L+VCQI++T VREVQALILSPTRELAAQTE+V+LAIGDYIN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVNTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131
Query: 401 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LD Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD 180
>tr|Q2MJJ9|Q2MJJ9_MAIZE Putative RH2 protein (RNA helicase 2) (Putative uncharacterized protein) OS=Zea mays GN=RH2 PE=2 SV=1 Length = 407
Score = 254 bits (648), Expect = 3e-66 Identities = 126/167 (75%), Positives = 145/167 (86%) Frame = +2
Query: 47 LDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDVIA 226 +DD+++ FETSPGVEV S+FD MGI+D+LLRGIY YGFEKPS RDVIA Sbjct: 17 MDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIA 76
Query: 227 QAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAHSC 406 QAQSGTGKTSMI+L VCQI+DT VREVQALILSPTRELA+QTE+V+LAIGD++NV+ H+C Sbjct: 77 QAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTERVMLAIGDHLNVQVHAC 136
Query: 407 IGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 IGGK+IGEDIR+LENGVHVVSGTPGRV DMIKRRTL TRA+KLLVLD Sbjct: 137 IGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLD 183
>tr|B5AKW1|B5AKW1_PENAM eIF-4A OS=Pennisetum americanum PE=2 SV=1 Length = 407
Score = 252 bits (644), Expect = 8e-66 Identities = 124/167 (74%), Positives = 144/167 (86%) Frame = +2
Query: 47 LDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDVIA 226 +DD+++ FETSPGVEV S+FD MGI+D+LLRGIY YGFEKPS RDVIA Sbjct: 17 MDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIA 76
Query: 227 QAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAHSC 406 QAQSGTGK+SMI+L VCQI+DT VREVQALILSPTRELA+QTEKV+LA+GDY+N++ H+C Sbjct: 77 QAQSGTGKSSMISLTVCQIVDTAVREVQALILSPTRELASQTEKVMLAVGDYLNIQVHAC 136
Query: 407 IGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 IGGK+I EDIR+LENGVHVVSGTPGRV DMIKRRTL TRA+KLLVLD Sbjct: 137 IGGKSISEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLD 183
>tr|A9TNS6|A9TNS6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60709 PE=4 SV=1 Length = 397
Score = 251 bits (640), Expect = 2e-65 Identities = 127/166 (76%), Positives = 143/166 (86%) Frame = +2
Query: 50 DDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDVIAQ 229 + +++ FETS GVEV S+FD MGIR++LLRGIYAYGFEKPS RD IAQ Sbjct: 8 EGENLVFETSAGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQ 67
Query: 230 AQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAHSCI 409 AQSGTGKTSMIALAVCQ+IDT REVQALILSPTRELAAQTEKVILAIGD++NV+AH+CI Sbjct: 68 AQSGTGKTSMIALAVCQMIDTATREVQALILSPTRELAAQTEKVILAIGDFMNVQAHACI 127
Query: 410 GGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLD 547 GGK+IGEDIRKLE GVHVVSGTPGRVYDMIKRRTL TR++KLL+LD Sbjct: 128 GGKSIGEDIRKLEYGVHVVSGTPGRVYDMIKRRTLRTRSIKLLILD 173
>tr|O65879|O65879_PEA Translation initiation factor OS=Pisum sativum GN=eIF-4A PE=2 SV=1 Length = 407
Score = 247 bits (631), Expect = 3e-64 Identities = 127/181 (70%), Positives = 149/181 (82%) Frame = +2
Query: 5 SVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXX 184 SVVP NR + ++ M FET+ GV+ +TF+ MGI+++LLRGIYAYGFEKPS Sbjct: 5 SVVPANRGRTV---ISNEDMDFETTEGVKAIATFEGMGIKEDLLRGIYAYGFEKPSAIQQ 61
Query: 185 XXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVI 364 RDVIAQAQSGTGKTSMIAL VCQ++DT+VREVQALI+SPTRELA QTEKVI Sbjct: 62 RAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALIVSPTRELATQTEKVI 121
Query: 365 LAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVL 544 LAIGD+IN++AH+CIGGK++GEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLLVL Sbjct: 122 LAIGDHINIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVL 181
Query: 545 D 547 D Sbjct: 182 D 182
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