DK956880
Clone id TST39A01NGRL0026_O11
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_O11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTGCTCTGTAAGTGCGCACTCATATTTTATCACACATTAACGCGCAGAGACGACAACCTC
CCTTCTTACACACAGCAAACTTAAAAGAAAACGATCGTCCACCACACATTCATCTCTCTC
TCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACATCCAGCT
GTTACAGGGAAGAGCGCAATTTCTCACAGAGACTGGACGCCGGCCCTTCAACCACCCCTT
TCCAGCAAGCCGTCCTTCCTCTGCTAATTGGTAGCTGGCAGGATGGCTTCCTTTACGGCA
TGTAGACCAGTTGCCGGCTTTTTGTCCCGAGACAGCCAGCAGAGCACAAATGAAGCGTCG
CAACGTAACCGTCTTGCAAGCCAAACCAAGTGTGGATGGAAGTTTTCCCAAGGAGTACGG
GCCTTTGTTTCTTCAAGTAGCACATCTTGTCAAAAGAAACGATCGTGGGATCTTGTTCTG
GCATCAGCTTCCCCTGCTTCCCCGCCTTTGGAAAAACCTGCTACACCTGCAAAATCAACA
TCTGAAGCTGCCTTGATCCTCA
■■Homology search results ■■ -
sp_hit_id Q8CNL3
Definition sp|Q8CNL3|LEU1_STAES 2-isopropylmalate synthase OS=Staphylococcus epidermidis (strain ATCC 12228)
Align length 65
Score (bit) 33.1
E-value 0.97
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956880|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_O11, 5'
(562 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8CNL3|LEU1_STAES 2-isopropylmalate synthase OS=Staphylococcu... 33 0.97
sp|Q5HMF9|LEU1_STAEQ 2-isopropylmalate synthase OS=Staphylococcu... 33 0.97
sp|Q8HYC3|UR2R_MACMU Urotensin II receptor OS=Macaca mulatta GN=... 32 2.8
sp|P44011|Y523_HAEIN Uncharacterized protein HI0523 OS=Haemophil... 30 8.2

>sp|Q8CNL3|LEU1_STAES 2-isopropylmalate synthase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=leuA PE=3 SV=1
Length = 511

Score = 33.1 bits (74), Expect = 0.97
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Frame = +2

Query: 320 FCPETASRAQMK----------RRNVTVLQAKPSVDGSFPKEYGPLFLQVAHLVKRNDRG 469
F PE A+R ++ T++ +V S+P EYG +F Q+ VK N +
Sbjct: 138 FSPEDATRTEIPFLIECVQTAINAGATIINIPDTVGFSYPTEYGEIFKQLTQAVKSNSKI 197

Query: 470 ILFWH 484
I H
Sbjct: 198 IFSAH 202


>sp|Q5HMF9|LEU1_STAEQ 2-isopropylmalate synthase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=leuA PE=3
SV=1
Length = 511

Score = 33.1 bits (74), Expect = 0.97
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Frame = +2

Query: 320 FCPETASRAQMK----------RRNVTVLQAKPSVDGSFPKEYGPLFLQVAHLVKRNDRG 469
F PE A+R ++ T++ +V S+P EYG +F Q+ VK N +
Sbjct: 138 FSPEDATRTEIPFLIECVQTAINAGATIINIPDTVGFSYPTEYGEIFKQLTQAVKSNSKI 197

Query: 470 ILFWH 484
I H
Sbjct: 198 IFSAH 202


>sp|Q8HYC3|UR2R_MACMU Urotensin II receptor OS=Macaca mulatta
GN=UTS2R PE=2 SV=1
Length = 389

Score = 31.6 bits (70), Expect = 2.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1

Query: 448 CQKKRSWDLVLASASPASPPLEKPATPA 531
C + + LVLA+A+PA P LE P PA
Sbjct: 362 CSPQPTESLVLAAAAPAGPALESPGDPA 389


>sp|P44011|Y523_HAEIN Uncharacterized protein HI0523 OS=Haemophilus
influenzae GN=HI0523 PE=4 SV=1
Length = 356

Score = 30.0 bits (66), Expect = 8.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2

Query: 227 FNHPFPASRPSSANW*LAGWLPLRHVDQLPAFCPETASRAQMKRRNVTV 373
FN P P+S + W P+ VD+ AFCP +QM +++
Sbjct: 287 FNIPTIGFYPNSRSSQPRRWKPINDVDKHIAFCPPAGKESQMNLELISI 335


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK956880|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_O11, 5'
(562 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******