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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956911
Clone id TST39A01NGRL0026_P18
Library
Length 204
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_P18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGTGCTTTCTTCCAGTGTTCACAATGGCAGAGGAACGAAAGGTACCCTCAGTCATGCAGA
AACTAGGAGGATATCCTTTACTTGGGTCTAAAGTATCGGACAATCGAAGAATGCACTACG
GTGCTGTGTCCACCGCTTACCAACGCCATGAATGGCGTTCACCTGCCTTGTCTTCAAGCA
TGGTTACCATAGATCATACCAAAA
■■Homology search results ■■ -
sp_hit_id Q9W603
Definition sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis
Align length 31
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_P18, 5'
         (204 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laev...    32   1.3  
sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus...    32   1.3  
sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens...    32   1.3  
sp|P19070|CR2_MOUSE Complement receptor type 2 OS=Mus musculus G...    30   4.9  

>sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis
           GN=supt16h PE=1 SV=2
          Length = 1035

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 45  PSVMQKLGGYPLLGSKVSDNRRMHYGAVSTA 137
           P ++Q  G Y L  S VSD   MH+GA++ A
Sbjct: 245 PPIIQSGGNYNLKFSVVSDKNHMHFGAITCA 275


>sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus
           GN=Supt16h PE=2 SV=2
          Length = 1047

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 45  PSVMQKLGGYPLLGSKVSDNRRMHYGAVSTA 137
           P ++Q  G Y L  S VSD   MH+GA++ A
Sbjct: 244 PPIIQSGGNYNLKFSVVSDKNHMHFGAITCA 274


>sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens
           GN=SUPT16H PE=1 SV=1
          Length = 1047

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 45  PSVMQKLGGYPLLGSKVSDNRRMHYGAVSTA 137
           P ++Q  G Y L  S VSD   MH+GA++ A
Sbjct: 244 PPIIQSGGNYNLKFSVVSDKNHMHFGAITCA 274


>sp|P19070|CR2_MOUSE Complement receptor type 2 OS=Mus musculus
           GN=Cr2 PE=2 SV=1
          Length = 1025

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 49  QSCRN*EDILYLGLKYRTIEECTTVLCPPLTNAMNGVH 162
           + C+N E+    G  ++ IE CT +LC P     NG H
Sbjct: 687 EKCQNAEN----GTWFKKIEVCTVILCQPPPKIANGGH 720
tr_hit_id A8NZD7
Definition tr|A8NZD7|A8NZD7_COPC7 Predicted protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 63
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_P18, 5'
         (204 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8NZD7|A8NZD7_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.4  
tr|Q6MPG0|Q6MPG0_BDEBA Putative uncharacterized protein OS=Bdell...    33   9.2  

>tr|A8NZD7|A8NZD7_COPC7 Predicted protein OS=Coprinopsis cinerea
            (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_08668 PE=4
            SV=1
          Length = 1094

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 8    SSSVHNGRGTKGTLSHAETRRISFTWV*SIGQSKNALRCCVHRLPTP*MAFTCLVFKHGY 187
            +SS  +GR T G  S+             +G   + ++C + RLP   + F C + KHG 
Sbjct: 1001 ASSSSSGRYTSGAFSYC------------LGCKTDTVKCSICRLPVRSLLFQCSICKHGG 1048

Query: 188  HRS 196
            H+S
Sbjct: 1049 HQS 1051


>tr|Q6MPG0|Q6MPG0_BDEBA Putative uncharacterized protein
           OS=Bdellovibrio bacteriovorus GN=Bd0895 PE=3 SV=1
          Length = 638

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 109 LRLSDTLDPSKGYPPSFCMTEGTFRSS 29
           L L D LDP KGYPP+  +T G+F  S
Sbjct: 447 LSLHDLLDPKKGYPPTAEITMGSFSFS 473