| DK956916 |
| Clone id |
TST39A01NGRL0026_P23 |
| Library |
TST39 |
| Length |
601 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0026_P23. 5' end sequence. |
| Accession |
DK956916 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL1243Contig1 |
| Sequence |
GCCTACTCTAATAATAATAAATCTTTGCTCTTGGAAGGCACTCTAGTTGCGCCCTTCTCT
TGCTCGCTTTCTGTTGCTTGCAAGAGAAGAGAATCTCTAAAAGCAGGCTTTTAAATTTTC
TACTTCTTCTGTGCATCTTCAGTTTTTATTTTTCCTTCTAGCTTTGTGTAATTAGGGGTG
ATTAGTGCCTAATTATCCATCAACAGCAAGCTTAACCACCCACCAACAAGCTTAATTACG
AGAAGATGGTTAATGACAGGACCCCGCTGCTGCCCCAAACCCAACAGGCAAGTGCTGGTA
ACTTTCCTTCAAGCAATGAAACAGGGAGGACCTCAAGCAGAAAAGGTGCGGTTTTGGTAG
CAGTTTGCGTGTTCCTCGGGCTTTTGGGCCTTTGGAGGTTGTCCTCCACAAACCCAGAAG
ACACAAAAACCATGCAGACTCTGTTGTCGGCAGCAGACCGGCCGCTGAGAGCCAACGAAG
GCCTCAATTATCTGGTGGTAGGCGATTGGGGAAGAGAGGGATTCTACAACCAGTCCCTGC
TCGCTACCCAAATGGGGAGGATTGCGCAAGAGCTGGGCATAGAATTTGTTATCTCGGCAG
G |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q74C57 |
| Definition |
sp|Q74C57|APGM_GEOSL Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacter sulfurreducens |
| Align length |
57 |
| Score (bit) |
34.7 |
| E-value |
0.38 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956916|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0026_P23, 5'
(601 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q74C57|APGM_GEOSL Probable 2,3-bisphosphoglycerate-independen... 35 0.38
sp|Q80VY2|CA183_MOUSE Uncharacterized protein C1orf183 homolog O... 33 1.4
sp|Q5ND04|HSF5_MOUSE Heat shock factor protein 5 OS=Mus musculus... 32 3.2
sp|A4R596|IML1_MAGGR Vacuolar membrane-associated protein IML1 O... 31 4.2
sp|Q8WV44|TRI41_HUMAN Tripartite motif-containing protein 41 OS=... 31 5.5
sp|Q5RAB7|S39AE_PONAB Zinc transporter ZIP14 OS=Pongo abelii GN=... 31 5.5
sp|Q15043|S39AE_HUMAN Zinc transporter ZIP14 OS=Homo sapiens GN=... 31 5.5
sp|Q876L5|AKR1_SACBA Palmitoyltransferase AKR1 OS=Saccharomyces ... 30 7.1
sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel s... 30 7.2
sp|P58812|APGM_METAC 2,3-bisphosphoglycerate-independent phospho... 30 7.2
sp|Q14155|ARHG7_HUMAN Rho guanine nucleotide exchange factor 7 O... 30 9.3
>sp|Q74C57|APGM_GEOSL Probable 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase OS=Geobacter sulfurreducens
GN=apgM PE=3 SV=1
Length = 399
Score = 34.7 bits (78), Expect = 0.38
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 446 VGSRPAAESQRRPQLSGGRRLGKRGILQPVPARYPNGEDCARAG-----HRICYLGR 601
+G + ++ R P + R G+ G+ + VP YP G D A R CY GR
Sbjct: 19 LGGKTPLQAARTPHMDAMARRGRIGLARTVPEGYPPGSDVANLSVFGYDPRACYTGR 75
>sp|Q80VY2|CA183_MOUSE Uncharacterized protein C1orf183 homolog
OS=Mus musculus PE=2 SV=1
Length = 300
Score = 32.7 bits (73), Expect = 1.4
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -3
Query: 413 VCGGQP---PKAQKPEEHANCYQNRTFSA*GPPCFIA*RKVTSTCLLGLGQQRGP-VINH 246
VCG + PK Q PEEH +C Q T ++ TST L+ G+ R P V+
Sbjct: 111 VCGKELAVLPKTQLPEEHQSCTQQGTE-------WVEPDDWTST-LMSRGRNRQPLVLGD 162
Query: 245 LLVIKLVGGWLSL 207
+ LVG WL L
Sbjct: 163 NVFADLVGNWLDL 175
>sp|Q5ND04|HSF5_MOUSE Heat shock factor protein 5 OS=Mus musculus
GN=Hsf5 PE=2 SV=1
Length = 624
Score = 31.6 bits (70), Expect = 3.2
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +3
Query: 255 DRTPLLPQTQQASAGNFPSSNETGRTSSRKG 347
DRTP+ P+T Q S G P ET T S KG
Sbjct: 250 DRTPIPPRTWQNSLGMHPGQVETSPTFSDKG 280
>sp|A4R596|IML1_MAGGR Vacuolar membrane-associated protein IML1
OS=Magnaporthe grisea GN=IML1 PE=3 SV=1
Length = 1846
Score = 31.2 bits (69), Expect = 4.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 392 LEVVLHKPRRHKNHADSVVGSRPAAESQRRPQLSGGRRLGK 514
+++ KP R+ N+ DS A E + ++ G RRLGK
Sbjct: 1146 IDIATPKPERNWNYIDSTSLDPAAGEKEEETRIEGTRRLGK 1186
>sp|Q8WV44|TRI41_HUMAN Tripartite motif-containing protein 41
OS=Homo sapiens GN=TRIM41 PE=1 SV=3
Length = 630
Score = 30.8 bits (68), Expect = 5.5
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 423 TKTMQTLLSAADRPLRANEGLNYLVVGDWGREGFYNQSLLA 545
+ T QTLLS +++P R L+Y + GR GFYN LA
Sbjct: 563 SSTEQTLLSPSEKPRRFGVYLDY----EAGRLGFYNAETLA 599
>sp|Q5RAB7|S39AE_PONAB Zinc transporter ZIP14 OS=Pongo abelii
GN=SLC39A14 PE=2 SV=2
Length = 490
Score = 30.8 bits (68), Expect = 5.5
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Frame = -2
Query: 456 LLPTTESAWFLCLLGLWRTTSKGPKARGTRKLLPKPHLFCLRSSLFH-----------CL 310
L P +S L LLGLWRTT P+A + P L H L
Sbjct: 4 LHPAFQSCLLLTLLGLWRTT---PEAHASSPGAPAISAASFLQDLIHRYGEGDSLTLQQL 60
Query: 309 KESYQHLPVGFGAAAGSCH*PSSRN 235
K HL VG G + H RN
Sbjct: 61 KALLNHLDVGVGRGNVTQHVQGHRN 85
>sp|Q15043|S39AE_HUMAN Zinc transporter ZIP14 OS=Homo sapiens
GN=SLC39A14 PE=1 SV=2
Length = 492
Score = 30.8 bits (68), Expect = 5.5
Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Frame = -2
Query: 456 LLPTTESAWFLCLLGLWRTTSKGPKARGTRKLLPKPHLFCLRSSLFH-----------CL 310
L P +S L LLGLWRTT P+A + P L H L
Sbjct: 6 LHPAFQSCLLLTLLGLWRTT---PEAHASSPGAPAISAASFLQDLIHRYGEGDSLTLQQL 62
Query: 309 KESYQHLPVGFGAAAGSCH*PSSRN 235
K HL VG G + H RN
Sbjct: 63 KALLNHLDVGVGRGNVTQHVQGHRN 87
>sp|Q876L5|AKR1_SACBA Palmitoyltransferase AKR1 OS=Saccharomyces
bayanus GN=AKR1 PE=3 SV=2
Length = 763
Score = 30.4 bits (67), Expect = 7.1
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 369 VFLGLLGLWRLSSTNPEDTKTMQTLLSAADRPLRANEGLNYLVVGDWGREGFYNQSLLAT 548
VFLGL S NP + LL+ A N+GLN LV+ +GR G +N +LL +
Sbjct: 331 VFLGL-AFALFSHVNPLFAIIVLFLLTLA-----TNKGLNKLVLPSYGRMGIHNVTLLRS 384
Query: 549 QM 554
+
Sbjct: 385 PL 386
>sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel
subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1
Length = 2339
Score = 30.4 bits (67), Expect = 7.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 410 KPRRHKNHADSVVGSRPA-AESQRRPQLSGGRRLGKRGILQPVPARYP 550
+PR H++H+ G A +E R P GGRR +RG + R P
Sbjct: 885 RPRPHRSHSKEAAGPPEARSERGRGPGPEGGRRHHRRGSPEEAAEREP 932
>sp|P58812|APGM_METAC 2,3-bisphosphoglycerate-independent
phosphoglycerate mutase OS=Methanosarcina acetivorans
GN=apgM PE=3 SV=1
Length = 397
Score = 30.4 bits (67), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 446 VGSRPAAESQRRPQLSGGRRLGKRGILQPVPARYPNGEDCA 568
+GSR ++ R P + GK G+ + VP +P G D A
Sbjct: 19 LGSRTILQAARTPAMDSIAARGKTGLAKTVPEGFPPGSDVA 59
Score = 30.4 bits (67), Expect = 7.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 406 EDNLQRPKSPRNTQTATKTAPFLLEVLPVSLL---EGKLPALACWVWG 272
+D L R K + + +LE+ PV+L EGK PA + WVWG
Sbjct: 171 DDYLPRGKDGEFFSGLIEASTVVLELHPVNLKRVQEGKNPANSIWVWG 218
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9NRL4 |
| Definition |
tr|A9NRL4|A9NRL4_PICSI Putative uncharacterized protein OS=Picea sitchensis |
| Align length |
43 |
| Score (bit) |
65.9 |
| E-value |
2.0e-09 |
| Report |
|