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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956929
Clone id TST39A01NGRL0027_A12
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_A12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TACGCCTCCTCGCCAGGGCCTTCTCTTCGGATGCGGGCGCTCTGCCCTCCCCTCAAGAGT
GTGACATCCGCATCTGATTCCCTCTTTCGTCTTGGCGCGACTGTACAGAGAAATTTGCTT
GTATCTGCATTTCCTCTCCTCGTGGAAGGACCTCCCGATTGTTATCGCAGGTGATAGTTT
GCGGGCCGCAGTTGAGTTTCGTGTATCAAGGGTAGTATGAATGCGAAATTCAACAATCGC
TCGTCAATCGAACCTGTGGATGAAGAAACCTGCGTATCTCCACTCGAACCTAAACTGCAT
TGAAAATTTTGATTTGCCAGCAGGTCGTCTGCTGGTCCTTGTAAGCTTTTGAAGATTTCA
TGTTCACATTCAGCCATGGAGATGAAAGACAGACATTCTTCTTTTTTAGCAATGGAGAAG
TCATCATCTTTGCTGGAGGCCATGGTGGATTTGTCTGCCAATATGGTGCCTTTGTGGGTA
GCTTGTACTGATCGGCCTTTTTGTAGGATGGATATGGAAAGCCACCGGTGGGTGAGCTTA
CT
■■Homology search results ■■ -
sp_hit_id Q04003
Definition sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Saccharomyces cerevisiae
Align length 51
Score (bit) 33.5
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956929|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_A12, 5'
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04003|SAS4_YEAST Something about silencing protein 4 OS=Sacc...    33   0.69 
sp|Q6KI38|RS5_MYCMO 30S ribosomal protein S5 OS=Mycoplasma mobil...    32   2.0  
sp|P06470|HOR1_HORVU B1-hordein OS=Hordeum vulgare PE=1 SV=1           32   2.6  
sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplastic OS=Solanu...    31   4.5  
sp|Q9S7B5|THRC_ARATH Threonine synthase, chloroplastic OS=Arabid...    30   5.8  
sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella f...    30   5.8  
sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichi...    30   5.8  
sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichi...    30   5.8  
sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichi...    30   5.8  
sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Sola...    30   5.8  
sp|Q5RDN3|PSMF1_PONAB Proteasome inhibitor PI31 subunit OS=Pongo...    30   7.6  
sp|Q92530|PSMF1_HUMAN Proteasome inhibitor PI31 subunit OS=Homo ...    30   7.6  
sp|P52607|FLII_BORBU Flagellum-specific ATP synthase OS=Borrelia...    30   7.6  
sp|P03790|V193_BPT7 Gene 19.3 protein OS=Enterobacteria phage T7...    30   9.9  
sp|P09084|PAX1_MOUSE Paired box protein Pax-1 OS=Mus musculus GN...    30   9.9  
sp|P28723|FTHS_SPIOL Formate--tetrahydrofolate ligase OS=Spinaci...    30   9.9  
sp|Q12NA7|ASTE_SHEDO Succinylglutamate desuccinylase OS=Shewanel...    30   9.9  

>sp|Q04003|SAS4_YEAST Something about silencing protein 4
           OS=Saccharomyces cerevisiae GN=SAS4 PE=1 SV=1
          Length = 481

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = -1

Query: 452 KSTMASSKDDDFSIAKKEECLSFISMAECEHEIFKSLQGPADDLLANQNFQ 300
           KS   S+ DD+  I KK E ++ +++    HE+ ++++ P DDLL +  +Q
Sbjct: 84  KSPFMSNVDDE--IKKKRETITKMTLEIEHHELSQNIRKPTDDLLPDSTYQ 132


>sp|Q6KI38|RS5_MYCMO 30S ribosomal protein S5 OS=Mycoplasma mobile
           GN=rpsE PE=3 SV=1
          Length = 243

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 515 ISILQKGRSVQATHKGTILA---DKSTMASSKDDDFSIAKKEECLSF 384
           I IL++  +    HKGTI     D ST  +SKD DF   KK    +F
Sbjct: 31  IEILEEKLNKNPDHKGTINTTPNDNSTSKNSKDKDFKFKKKTNSQNF 77


>sp|P06470|HOR1_HORVU B1-hordein OS=Hordeum vulgare PE=1 SV=1
          Length = 293

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 517 PYPSYKKADQYKLPTKAPYWQTNP-PWPPAKMMTSPLLKKKNVC 389
           PYP      Q   P + P+WQ  P P  P   +  P+L ++  C
Sbjct: 65  PYPQQPFPPQQPFPQQPPFWQQKPFPQQPPFGLQQPILSQQQPC 108


>sp|Q9MT28|THRC_SOLTU Threonine synthase, chloroplastic OS=Solanum
           tuberosum PE=2 SV=1
          Length = 519

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 77  IPSFVLARLYREICLYLHFLSSWKDLPIVIAGDSLRAAVE 196
           IP  V A+      LYLH+ S WKD   V A  +  +A++
Sbjct: 352 IPRLVCAQAANANPLYLHYKSGWKDFKPVKANTTFASAIQ 391


>sp|Q9S7B5|THRC_ARATH Threonine synthase, chloroplastic
           OS=Arabidopsis thaliana GN=At4g29840 PE=1 SV=1
          Length = 526

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 77  IPSFVLARLYREICLYLHFLSSWKDLPIVIAGDSLRAAVE 196
           IP  V A+      LYLH+ S WKD   + A  +  +A++
Sbjct: 359 IPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQ 398


>sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella
           flexneri GN=deaD PE=3 SV=2
          Length = 629

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 139 GEEMQIQANFSVQSRQDERGNQMRMSHS*GEGRAPASEEKALARR 5
           GE  +   NFS + R+  RG+  R S    EGRAP  ++    RR
Sbjct: 580 GERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624


>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichia
           coli (strain K12) GN=deaD PE=1 SV=2
          Length = 629

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 139 GEEMQIQANFSVQSRQDERGNQMRMSHS*GEGRAPASEEKALARR 5
           GE  +   NFS + R+  RG+  R S    EGRAP  ++    RR
Sbjct: 580 GERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624


>sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichia
           coli O6 GN=deaD PE=3 SV=2
          Length = 629

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 139 GEEMQIQANFSVQSRQDERGNQMRMSHS*GEGRAPASEEKALARR 5
           GE  +   NFS + R+  RG+  R S    EGRAP  ++    RR
Sbjct: 580 GERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624


>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichia
           coli O157:H7 GN=deaD PE=3 SV=3
          Length = 629

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 139 GEEMQIQANFSVQSRQDERGNQMRMSHS*GEGRAPASEEKALARR 5
           GE  +   NFS + R+  RG+  R S    EGRAP  ++    RR
Sbjct: 580 GERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624


>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum
           lycopersicum GN=CURL3 PE=1 SV=1
          Length = 1207

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
 Frame = +1

Query: 325 SSAGPCKLLKISCSHSAMEMKDRHSSFLAMEKS--------SSLLEAMVDLSANM 465
           SS GPC    +SC +S +   D  ++FL+++ S         S LE++V  +AN+
Sbjct: 66  SSTGPCSFTGVSCKNSRVSSIDLSNTFLSVDFSLVTSYLLPLSNLESLVLKNANL 120
tr_hit_id Q9VSR0
Definition tr|Q9VSR0|Q9VSR0_DROME Misfire, isoform K OS=Drosophila melanogaster
Align length 53
Score (bit) 38.1
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956929|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_A12, 5'
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9VSR0|Q9VSR0_DROME Misfire, isoform K OS=Drosophila melanoga...    38   0.30 
tr|B7Z0F1|B7Z0F1_DROME Misfire, isoform E OS=Drosophila melanoga...    38   0.30 
tr|B7Z0F0|B7Z0F0_DROME Misfire, isoform B OS=Drosophila melanoga...    38   0.30 
tr|B7Z0E9|B7Z0E9_DROME Misfire, isoform C OS=Drosophila melanoga...    38   0.30 
tr|B7Z0E7|B7Z0E7_DROME Misfire, isoform D OS=Drosophila melanoga...    38   0.30 
tr|B7Z0E6|B7Z0E6_DROME Misfire, isoform I OS=Drosophila melanoga...    38   0.30 
tr|B7Z0E5|B7Z0E5_DROME Misfire, isoform F OS=Drosophila melanoga...    38   0.30 
tr|B3NBM2|B3NBM2_DROER GG15053 OS=Drosophila erecta GN=GG15053 P...    38   0.30 
tr|A4UGS7|A4UGS7_DROME Misfire OS=Drosophila melanogaster GN=mfr...    38   0.30 
tr|A4UGS5|A4UGS5_DROME Misfire OS=Drosophila melanogaster GN=mfr...    38   0.30 
tr|A4UGS2|A4UGS2_DROME Misfire OS=Drosophila melanogaster GN=mfr...    38   0.30 
tr|A4UGS1|A4UGS1_DROME Misfire (Fragment) OS=Drosophila melanoga...    38   0.30 
tr|A4UGS3|A4UGS3_DROME Misfire OS=Drosophila melanogaster GN=mfr...    37   0.88 
tr|B4PFH4|B4PFH4_DROYA GE21275 OS=Drosophila yakuba GN=GE21275 P...    36   1.1  
tr|Q8A7I4|Q8A7I4_BACTN Transcriptional regulator OS=Bacteroides ...    36   1.5  
tr|A4XVG6|A4XVG6_PSEMY UspA domain protein OS=Pseudomonas mendoc...    35   2.6  
tr|A5ZJ43|A5ZJ43_9BACE Putative uncharacterized protein OS=Bacte...    34   4.4  
tr|B8P330|B8P330_9APHY Predicted protein OS=Postia placenta Mad-...    31   4.5  
tr|B4QMM2|B4QMM2_DROSI GD12956 OS=Drosophila simulans GN=GD12956...    34   5.7  
tr|B4HK43|B4HK43_DROSE GM24909 OS=Drosophila sechellia GN=GM2490...    34   5.7  
tr|B5HSG5|B5HSG5_9ACTO Transmembrane efflux protein OS=Streptomy...    33   7.4  
tr|B3RVD4|B3RVD4_TRIAD Putative uncharacterized protein OS=Trich...    33   7.4  
tr|B5VG75|B5VG75_YEAS6 YDR181Cp-like protein OS=Saccharomyces ce...    33   7.4  
tr|B3LGA1|B3LGA1_YEAS1 Something about silencing protein 4 OS=Sa...    33   7.4  
tr|A6ZYE0|A6ZYE0_YEAS7 SAS complex subunit OS=Saccharomyces cere...    33   7.4  
tr|B6SWX1|B6SWX1_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.7  
tr|Q5QPM4|Q5QPM4_HUMAN Proteasome (Prosome, macropain) inhibitor...    33   9.7  

>tr|Q9VSR0|Q9VSR0_DROME Misfire, isoform K OS=Drosophila
           melanogaster GN=mfr PE=4 SV=2
          Length = 1806

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 546 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 598


>tr|B7Z0F1|B7Z0F1_DROME Misfire, isoform E OS=Drosophila
           melanogaster GN=mfr PE=4 SV=1
          Length = 639

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 248 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 300


>tr|B7Z0F0|B7Z0F0_DROME Misfire, isoform B OS=Drosophila
           melanogaster GN=mfr PE=4 SV=1
          Length = 1045

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 3   RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 55


>tr|B7Z0E9|B7Z0E9_DROME Misfire, isoform C OS=Drosophila
           melanogaster GN=mfr PE=4 SV=1
          Length = 1398

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 338 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 390


>tr|B7Z0E7|B7Z0E7_DROME Misfire, isoform D OS=Drosophila
           melanogaster GN=mfr PE=4 SV=1
          Length = 1351

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 250 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 302


>tr|B7Z0E6|B7Z0E6_DROME Misfire, isoform I OS=Drosophila
           melanogaster GN=mfr PE=4 SV=1
          Length = 1439

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 338 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 390


>tr|B7Z0E5|B7Z0E5_DROME Misfire, isoform F OS=Drosophila
           melanogaster GN=mfr PE=4 SV=1
          Length = 1647

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 546 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 598


>tr|B3NBM2|B3NBM2_DROER GG15053 OS=Drosophila erecta GN=GG15053 PE=4
           SV=1
          Length = 1806

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++ +A  DQ+T CW++K F+
Sbjct: 522 RTQDEWPELVLSLSAAGKDVGVCRLNAKLFLNLRNQQADLDQETLCWRLKSFS 574


>tr|A4UGS7|A4UGS7_DROME Misfire OS=Drosophila melanogaster GN=mfr
           PE=2 SV=1
          Length = 637

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 248 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 300


>tr|A4UGS5|A4UGS5_DROME Misfire OS=Drosophila melanogaster GN=mfr
           PE=2 SV=1
          Length = 1396

 Score = 38.1 bits (87), Expect = 0.30
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 457 QTNPPWPPAKMMTSPLLKKKNVCLSSPWLNVNMKSSKAYKDQQTTCWQIKIFN 299
           +T   WP   +  S   K   VC  +  L +N+++  A +DQ+T CW++K F+
Sbjct: 338 RTQDEWPELVLSLSASGKDVGVCRLNAKLFLNLRNQDADQDQETLCWRLKSFS 390