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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956933
Clone id TST39A01NGRL0027_A16
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_A16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ACATATCTTATCTCTCTCATTTTTTGTGTGTACAGCTCGTAACCTTATCTTCTCCGTCTC
TTCTCTACACTTCTCCATCCCCCTGAAGCCATGAGCATCCGTGACTCTGTCCGCTTCCGT
GTCGACTCCACAAATGGTATCAGAGCACTAGCTTTGTCTTGGGTAAAAAGCTCCTGGAAG
GAAGAGTTTGAGCAGACGGAAACAAAGGGGGAGGCTCTGAGAGAGTTGGAAGAACAACCT
TGTTGATCTCACTCTCTGCGGGGTTGTCTTATTTCAGCTCCGACGGCTGTTGGTGGCACT
ACCACAACAATGCCCATGTAAGGGCGGTTCAACCATCAATGCAGTGCCTAAGAGGGCAGC
ACTACCGACAAACAAGAGAAGGCCGGCTAGGCTCAGGAGGCTGTCAGGGGCTCTGGGAGT
AGACCAAGGGCACGATTGCAGGAGAAGGCTCGTTCATGTAGGAGAAGGCAACAACAACAC
ACAAGGAGTGGGGGTTTTGAAGAGCACTGCAGAGGGGCGCCAGGCCTTGCACATGGCAGC
TACATAAGCCT
■■Homology search results ■■ -
sp_hit_id P19091
Definition sp|P19091|ANDR_MOUSE Androgen receptor OS=Mus musculus
Align length 55
Score (bit) 32.3
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956933|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_A16, 5'
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P19091|ANDR_MOUSE Androgen receptor OS=Mus musculus GN=Ar PE=...    32   1.6  
sp|Q54EY4|DST3_DICDI Serine/threonine-protein kinase dst3 OS=Dic...    32   2.0  
sp|Q3UMF0|COBL1_MOUSE Cordon-bleu protein-like 1 OS=Mus musculus...    32   2.0  
sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like doma...    32   2.7  
sp|A6NNA2|SRR2L_HUMAN SRRM2-like protein OS=Homo sapiens PE=2 SV=4     31   3.5  
sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domain...    31   3.5  
sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=C...    31   3.5  
sp|P0A4R4|URED_BORPE Urease accessory protein ureD OS=Bordetella...    31   4.6  
sp|P0A4R6|URED_BORPA Urease accessory protein ureD OS=Bordetella...    31   4.6  
sp|P0A4R5|URED_BORBR Urease accessory protein ureD OS=Bordetella...    31   4.6  
sp|A8GHR1|MDTD_SERP5 Putative multidrug resistance protein mdtD ...    30   6.0  
sp|P15207|ANDR_RAT Androgen receptor OS=Rattus norvegicus GN=Ar ...    30   6.0  
sp|Q9SQT9|AGP27_ARATH Classical arabinogalactan protein 27 OS=Ar...    30   7.8  

>sp|P19091|ANDR_MOUSE Androgen receptor OS=Mus musculus GN=Ar PE=1
           SV=1
          Length = 899

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
 Frame = +1

Query: 394 QEAVRGSGSR---------PRARLQEKARSC--RRRQQQHTRSGGFEEHCRGAPG 525
           +EA++  G R         P A LQ++  +   RRR+QQHT  G  + H RG  G
Sbjct: 31  REAIQNPGPRHPEAANIAPPGACLQQRQETSPRRRRRQQHTEDGSPQAHIRGPTG 85


>sp|Q54EY4|DST3_DICDI Serine/threonine-protein kinase dst3
           OS=Dictyostelium discoideum GN=dst3 PE=3 SV=1
          Length = 562

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 20/46 (43%), Positives = 22/46 (47%)
 Frame = -2

Query: 295 HQQPSELK*DNPAESEINKVVLPTLSEPPPLFPSAQTLPSRSFLPK 158
           HQ P  LK  +    E N  V   LS  P L PSAQ L S  F+ K
Sbjct: 242 HQPPPSLKIPSDWSPEFNDFVKQCLSMNPALRPSAQQLLSHPFILK 287


>sp|Q3UMF0|COBL1_MOUSE Cordon-bleu protein-like 1 OS=Mus musculus
            GN=Cobll1 PE=1 SV=2
          Length = 1273

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 238  VVLPTLSEPPPLFPSAQTLPSRSFLP 161
            + LP  + PPP+FP   TLP+ + LP
Sbjct: 1053 MTLPAETSPPPVFPKPMTLPAETSLP 1078


>sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like domains
           6 OS=Mus musculus GN=Megf6 PE=2 SV=3
          Length = 1572

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 421 RPRARLQEKARSCRRRQQQHTRSGGFEEHCRGAPGLAH 534
           RP+ +LQE  R C RR      +GG    C+   GLAH
Sbjct: 232 RPQYQLQEDGRRCVRRSPCADGNGGCMHTCQELRGLAH 269


>sp|A6NNA2|SRR2L_HUMAN SRRM2-like protein OS=Homo sapiens PE=2 SV=4
          Length = 597

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
 Frame = +1

Query: 325 RFNHQCSA*EGSTTDKQEKAG*AQEAVRG-SGSRPRARLQEKARSCRRRQQQ------HT 483
           R   +CS    S   K++K+       R  SGSR + R + ++  C+R+++       HT
Sbjct: 186 RLESECSCGSSSPLRKKKKSVKKHRRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHT 245

Query: 484 RSGGFEEHCRGAPGLAHGSYIS 549
            S G   H R + G +H   +S
Sbjct: 246 ESPGRRSH-RHSSGSSHSPSLS 266


>sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domains 6
           OS=Rattus norvegicus GN=Megf6 PE=2 SV=1
          Length = 1574

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 421 RPRARLQEKARSCRRRQQQHTRSGGFEEHCRGAPGLAH 534
           RP+ +LQE  R C RR      +GG    C+   GLAH
Sbjct: 233 RPQYQLQEDGRRCVRRSPCAEGNGGCMHICQELRGLAH 270


>sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment)
           OS=Canis familiaris GN=CUX1 PE=2 SV=1
          Length = 975

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 400 AVRGSGSRPRARLQEKARSCRRRQQQHTRSGG---FEEHCRGAP 522
           A RG   RP AR + + R  RRR+++H R GG        RG P
Sbjct: 857 AARGPSRRPGARAKPRRR--RRRRRRHARGGGRRYLSRPARGGP 898


>sp|P0A4R4|URED_BORPE Urease accessory protein ureD OS=Bordetella
           pertussis GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 70  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKEEFEQTETKGEALRELEE 234
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++  +    +  A   L+ 
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQASQDVHLRVAAGGRLDW 112

Query: 235 QP 240
            P
Sbjct: 113 LP 114


>sp|P0A4R6|URED_BORPA Urease accessory protein ureD OS=Bordetella
           parapertussis GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 70  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKEEFEQTETKGEALRELEE 234
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++  +    +  A   L+ 
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQASQDVHLRVAAGGRLDW 112

Query: 235 QP 240
            P
Sbjct: 113 LP 114


>sp|P0A4R5|URED_BORBR Urease accessory protein ureD OS=Bordetella
           bronchiseptica GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +1

Query: 70  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKEEFEQTETKGEALRELEE 234
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++  +    +  A   L+ 
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQASQDVHLRVAAGGRLDW 112

Query: 235 QP 240
            P
Sbjct: 113 LP 114
tr_hit_id A3B3V4
Definition tr|A3B3V4|A3B3V4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 70
Score (bit) 35.8
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956933|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_A16, 5'
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3B3V4|A3B3V4_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|Q749H4|Q749H4_GEOSL Metallo-beta-lactamase family protein OS=...    33   7.7  
tr|A9FNK8|A9FNK8_SORC5 TonB family protein OS=Sorangium cellulos...    33   7.7  
tr|Q9F4V3|Q9F4V3_PHOLU Photopexin B OS=Photorhabdus luminescens ...    33   7.7  
tr|Q4IUR1|Q4IUR1_AZOVI Hydrogenase maturation protein HypF OS=Az...    33   10.0 
tr|B8AIR7|B8AIR7_ORYSI Putative uncharacterized protein OS=Oryza...    33   10.0 

>tr|A3B3V4|A3B3V4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_017726 PE=4 SV=1
          Length = 410

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 23/70 (32%), Positives = 29/70 (41%)
 Frame = -2

Query: 229 PTLSEPPPLFPSAQTLPSRSFLPKTKLVL*YHLWSRHGSGQSHGCSWLQGDGEV*RRDGE 50
           P L+ P P   +A+T PS S    T   L   +W R    Q  G  W  G G   R+ G 
Sbjct: 23  PNLTRPGPASSAAKTSPSLSRARWTGGALDSEIWKRERKNQGGGGPWSVGRGPCTRKGGP 82

Query: 49  DKVTSCTHKK 20
             V   + KK
Sbjct: 83  TTVPCLSTKK 92


>tr|Q749H4|Q749H4_GEOSL Metallo-beta-lactamase family protein
           OS=Geobacter sulfurreducens GN=GSU2769 PE=4 SV=1
          Length = 295

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 82  PEAMSIRDSVRFRVDSTNGIRALALSWVKSSWKEEFEQTETK 207
           P  M I D+ +  VDS   + A+ L W+ S+W E  + TE K
Sbjct: 177 PGDMPIFDNYQLAVDSLVKLEAIELEWLLSAWDEPKQATEAK 218


>tr|A9FNK8|A9FNK8_SORC5 TonB family protein OS=Sorangium cellulosum
           (strain So ce56) GN=sce8263 PE=4 SV=1
          Length = 859

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 23/71 (32%), Positives = 29/71 (40%)
 Frame = +2

Query: 314 PCKGGSTINAVPKRAALPTNKRRPARLRRLSGALGVDQGHDCRRRLVHVGEGNNNTQGVG 493
           P KG    N                RLR  + A+ V +  + +RR   +GE    TQGVG
Sbjct: 165 PAKGPDPANDAAPAEVTVRGAAMAERLRLSAQAITVIETEEAQRRTADMGEVLARTQGVG 224

Query: 494 VLKSTAEGRQA 526
           V KS   G  A
Sbjct: 225 VRKSAGLGSWA 235


>tr|Q9F4V3|Q9F4V3_PHOLU Photopexin B OS=Photorhabdus luminescens
           PE=4 SV=1
          Length = 340

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 138 YQSTSFVLGKKLLEGRV*ADGNKGGGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAH 317
           Y  +S  + KK +  R  A G   G SE +    L  +++  + YF  D  +  Y+  +H
Sbjct: 122 YTVSSHTINKKTISERWGATGKYAGFSEDLDAVILWKNITGSIIYFFKDSYYIQYNTKSH 181

Query: 318 VRAVQPS 338
           V   +PS
Sbjct: 182 VIDGEPS 188


>tr|Q4IUR1|Q4IUR1_AZOVI Hydrogenase maturation protein HypF
           OS=Azotobacter vinelandii DJ GN=AvinDRAFT_1771 PE=4 SV=1
          Length = 1078

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 367 DKQEKAG*AQEAVRGSGSRPRARLQEKARSCRRRQQQHTRSGGFEEHCRG-APGLAHG 537
           D   +A     A  G   RP  R + +A  C      H R+GG ++H +G  PG AHG
Sbjct: 114 DPDHRAARPAPAAGGDRGRPADRPRRRAHPC------HRRAGGADQHRQGLPPGRAHG 165


>tr|B8AIR7|B8AIR7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08955 PE=4 SV=1
          Length = 111

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 282 DGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREGRLGSGG 401
           DGCW  Y     +R + P +  LRG   RQ R  + G+ G
Sbjct: 72  DGCWVAYGRRGMMRRLPPPLPSLRGAMRRQGRLQKFGASG 111