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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956943
Clone id TST39A01NGRL0027_B02
Library
Length 568
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_B02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCGCTTGTGCCTTGCCCGGCCGCCCAGAGTCTGAGCGCCCACTGACTTGTATACCTTAT
ACATAGCATAAGTGTATAGGGGGCTGCTCACTCTTTGAGTCTCCCCACCCATATCTGTGT
GTCGTGTCTCCTTCTCTCTCTCACTCACTCTCCGTCTGTGGTGCTCCCCGATCCCCTTCA
ATTGGTATCAGAGCTATGGTGACCGCGGAGAGCATGACGGCTTTGAGAGCTTCGAGGCGA
TAGCTCGCTCGCTCTCAACGGTGGAGTTCGATCGCAAAGTTTCATGGAGAGCGATTTTAG
CTTGAGGAGCATTGTCTTTGGATCTTAGGAGCTTGGTGTGGTCAAGCTTGGTCGAGGAGG
CGGTTGCGGCTTCCTTGGTGAGAGGAGCTTTTGAGCTCAGTGGAGCTCGTTAGAGAAGTG
CTCGGCGGAGGAGAGCTTGACATTCGAGTGCTTGGATGCTGTTGTGGCAGAGCTCTTGCG
TTGGAGCTTGCATTGAGAGGACATTGCATCACGCAAAGTGGAGCAGGAGCAGGTTCAAGA
CTGTGTGCAACTCGTTTTTGCCATTTTT
■■Homology search results ■■ -
sp_hit_id Q3JD89
Definition sp|Q3JD89|Y691_NITOC UPF0061 protein Noc_0691 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848)
Align length 37
Score (bit) 31.6
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956943|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_B02, 5'
         (568 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3JD89|Y691_NITOC UPF0061 protein Noc_0691 OS=Nitrosococcus o...    32   2.9  
sp|P22484|VGLD_EHV1K Glycoprotein D OS=Equine herpesvirus 1 (str...    30   6.4  
sp|P68327|VGLD_EHV1D Glycoprotein D OS=Equine herpesvirus 1 (str...    30   6.4  
sp|Q6DLD9|VGLD_EHV1B Glycoprotein D OS=Equine herpesvirus 1 (str...    30   6.4  

>sp|Q3JD89|Y691_NITOC UPF0061 protein Noc_0691 OS=Nitrosococcus
           oceani (strain ATCC 19707 / NCIMB 11848) GN=Noc_0691
           PE=3 SV=2
          Length = 493

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 566 KWQKRVAHSLEPAPAPLCVMQCPLNASSNARALPQQH 456
           +WQ+R+ H+ +P P+ LC+M      ++N   +P+ H
Sbjct: 407 RWQQRLEHNTKPFPSSLCLM-----GATNPVVIPRNH 438


>sp|P22484|VGLD_EHV1K Glycoprotein D OS=Equine herpesvirus 1 (strain
           Kentucky A) GN=GD PE=3 SV=1
          Length = 442

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 84  LLTL*VSPPISVCRVSFSLSLTL--RLW--CSPIPFNWYQSYGDR 206
           LL L V+PP SVC ++  LSL L  + W  C  +P  WY  +  R
Sbjct: 5   LLVLYVNPPPSVCILTQKLSLGLYNQWWRVCRSVPPPWYVFFNKR 49


>sp|P68327|VGLD_EHV1D Glycoprotein D OS=Equine herpesvirus 1 (strain
           Kentucky D) GN=GD PE=3 SV=1
          Length = 452

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 84  LLTL*VSPPISVCRVSFSLSLTL--RLW--CSPIPFNWYQSYGDR 206
           LL L V+PP SVC ++  LSL L  + W  C  +P  WY  +  R
Sbjct: 5   LLVLYVNPPPSVCILTQKLSLGLYNQWWRVCRSVPPPWYVFFNKR 49


>sp|Q6DLD9|VGLD_EHV1B Glycoprotein D OS=Equine herpesvirus 1 (strain
           Ab4p) GN=GD PE=3 SV=1
          Length = 452

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 84  LLTL*VSPPISVCRVSFSLSLTL--RLW--CSPIPFNWYQSYGDR 206
           LL L V+PP SVC ++  LSL L  + W  C  +P  WY  +  R
Sbjct: 5   LLVLYVNPPPSVCILTQKLSLGLYNQWWRVCRSVPPPWYVFFNKR 49
tr_hit_id Q8IR43
Definition tr|Q8IR43|Q8IR43_DROME CG32591 OS=Drosophila melanogaster
Align length 90
Score (bit) 36.6
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956943|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_B02, 5'
         (568 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8IR43|Q8IR43_DROME CG32591 OS=Drosophila melanogaster GN=CG3...    37   1.00 
tr|Q6NLI6|Q6NLI6_DROME AT07976p OS=Drosophila melanogaster GN=CG...    36   1.7  
tr|B4R4X1|B4R4X1_DROSI GD15827 OS=Drosophila simulans GN=GD15827...    36   1.7  
tr|B4IJ83|B4IJ83_DROSE GM12015 OS=Drosophila sechellia GN=GM1201...    35   2.2  
tr|A8IJ70|A8IJ70_AZOC5 Putative uncharacterized protein OS=Azorh...    33   8.5  

>tr|Q8IR43|Q8IR43_DROME CG32591 OS=Drosophila melanogaster
           GN=CG32591 PE=2 SV=1
          Length = 392

 Score = 36.6 bits (83), Expect = 1.00
 Identities = 31/90 (34%), Positives = 41/90 (45%)
 Frame = -1

Query: 367 ATASSTKLDHTKLLRSKDNAPQAKIALHETLRSNSTVESERAIASKLSKPSCSPRSP*L* 188
           A  S+     TK L+SK +  Q  +  + T++SN TV S    ASK S+ S   R   L 
Sbjct: 237 APLSARSSASTKTLKSKRSVSQESVRSNATIKSNITVASRSTTASKRSQVS---RKSKLM 293

Query: 187 YQLKGIGEHHRRRVSEREKETRHTDMGGET 98
             +        RR  EREKE   T + G T
Sbjct: 294 EVMPPPTHLEDRRPKEREKEKAPTAIEGYT 323


>tr|Q6NLI6|Q6NLI6_DROME AT07976p OS=Drosophila melanogaster
           GN=CG32591 PE=2 SV=1
          Length = 392

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 30/90 (33%), Positives = 41/90 (45%)
 Frame = -1

Query: 367 ATASSTKLDHTKLLRSKDNAPQAKIALHETLRSNSTVESERAIASKLSKPSCSPRSP*L* 188
           A  S+     TK L+SK +  Q  +  + T++SN TV S    ASK S+ S   +   L 
Sbjct: 237 APLSARSSASTKTLKSKRSVSQESVRSNATIKSNITVASRSTTASKRSQVSGKSK---LM 293

Query: 187 YQLKGIGEHHRRRVSEREKETRHTDMGGET 98
             +        RR  EREKE   T + G T
Sbjct: 294 EVMPPPTHLEDRRPKEREKEKAPTAIEGYT 323


>tr|B4R4X1|B4R4X1_DROSI GD15827 OS=Drosophila simulans GN=GD15827
           PE=4 SV=1
          Length = 387

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 30/90 (33%), Positives = 41/90 (45%)
 Frame = -1

Query: 367 ATASSTKLDHTKLLRSKDNAPQAKIALHETLRSNSTVESERAIASKLSKPSCSPRSP*L* 188
           A  S+     TK ++SK +  Q  +  + T++SN TV S    ASK S+ S   R   L 
Sbjct: 232 APLSARSSASTKTIKSKRSVSQESVRSNATIKSNVTVASRSTTASKRSQVS---RKSKLM 288

Query: 187 YQLKGIGEHHRRRVSEREKETRHTDMGGET 98
             +        RR  EREKE   T + G T
Sbjct: 289 EVMPPPTHLEDRRPKEREKEKAPTAIEGYT 318


>tr|B4IJ83|B4IJ83_DROSE GM12015 OS=Drosophila sechellia GN=GM12015
           PE=4 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 2.2
 Identities = 30/90 (33%), Positives = 41/90 (45%)
 Frame = -1

Query: 367 ATASSTKLDHTKLLRSKDNAPQAKIALHETLRSNSTVESERAIASKLSKPSCSPRSP*L* 188
           A  S+     TK ++SK +  Q  +  + T++SN TV S    ASK S+ S   R   L 
Sbjct: 189 APLSARSSASTKTIKSKRSVSQESVCSNATIKSNVTVASRSTNASKRSQVS---RKSKLM 245

Query: 187 YQLKGIGEHHRRRVSEREKETRHTDMGGET 98
             +        RR  EREKE   T + G T
Sbjct: 246 EVMPPPTHLEDRRPQEREKEKAPTAIEGYT 275


>tr|A8IJ70|A8IJ70_AZOC5 Putative uncharacterized protein
           OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
           5975 / ORS 571) GN=AZC_0259 PE=4 SV=1
          Length = 465

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
 Frame = -1

Query: 403 PLSSKAPLTKEAATASSTKLDHTKLLRSKDNAPQA---------KIALHETLRSNSTVES 251
           P++SK P +K AA ASS   D  K  + + +AP+           + L ET   ++  + 
Sbjct: 43  PMASKNPTSKAAAEASSKADDAPKAPQPETSAPETAAAPVSAPEPVTLEETAAPDTPPKV 102

Query: 250 ERAIASKLSKPSCSPRSP 197
           E A +++ +  + +P SP
Sbjct: 103 EAAASAEAASSASAPVSP 120