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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956948
Clone id TST39A01NGRL0027_B07
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_B07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAAAAGTAATTGAGACAGGGGAGGGAGGACCTGCTGCTGCTCTGTTTCTCGAAATTCTG
CGCCATGGTCCCTAAACTACGCTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAAGCCCACTTTACGGCGACTCAGGTAAGCAGCAGCCTCCCCAGTACACGCACA
AACAAGTGTACCAGATCTGTTGGGTAGCGCAAATGACTCCACCCAAAGTGACCCAGTTCG
AGCCCACAGCAGGGGTTTACTTTTCAGGATCGTATACCGCAATGGTTGGACATCGAAGTC
TAGCTGAGAGGCAGGAAATTCTGTATAAAACATCTCAGGGGATGGAAGGAGGCCGAGAAA
CCCTAGAGTCATGGACGAGGAAGGATTTGCTGGAACTTATATGTATTGAAATGGGAAAGG
AGAGAAAGTACACAGGAGTATCCAAGAGTAAAATGGTCGAGCACCTTCTGAAGTTGGTTT
CTATGAAGGGTTTAAGGGAAGGGGGTAATGTGGGGGGCATCAAGGTGGATGGGGGCTTAA
TGCCTCCGTCATCCCAGCCAACCGCCCCTCAAAGTTTATTGAGACGGCAACGAAAAGCAG
GGAGGCCTGCTCGAATTCCATCAG
■■Homology search results ■■ -
sp_hit_id Q9FIE3
Definition sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana
Align length 62
Score (bit) 70.5
E-value 6.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956948|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_B07, 5'
         (608 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arab...    70   6e-12
sp|Q9ZV48|TPS11_ARATH Probable alpha,alpha-trehalose-phosphate s...    31   4.3  
sp|P12791|CP2BA_MOUSE Cytochrome P450 2B10 OS=Mus musculus GN=Cy...    31   5.6  
sp|O15910|RIR2_TRYBB Ribonucleoside-diphosphate reductase small ...    30   7.4  
sp|Q8CWM2|TRMD_THEEB tRNA (guanine-N(1)-)-methyltransferase OS=T...    30   9.6  
sp|P04167|CP2B2_RAT Cytochrome P450 2B2 OS=Rattus norvegicus GN=...    30   9.6  
sp|P00176|CP2B1_RAT Cytochrome P450 2B1 OS=Rattus norvegicus GN=...    30   9.6  

>sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3
           OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
          Length = 620

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 30/62 (48%), Positives = 48/62 (77%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           +++ER+E+++  S   E   E L SW+R +++++IC EMGKERKYTG++K K++E+LL L
Sbjct: 41  NVSERRELIHALSNQPEEASELLNSWSRNEIMKIICAEMGKERKYTGLNKPKLIENLLNL 100

Query: 477 VS 482
           VS
Sbjct: 101 VS 102


>sp|Q9ZV48|TPS11_ARATH Probable alpha,alpha-trehalose-phosphate
           synthase [UDP-forming] 11 OS=Arabidopsis thaliana
           GN=TPS11 PE=2 SV=1
          Length = 862

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 13/124 (10%)
 Frame = +3

Query: 165 PQYTHKQVYQICWVAQMTPPKVTQFEPTAGVYFSGSYTAMVGHRSLAERQEILYKTSQGM 344
           P  T +    + W     P      E T G +     +AMV H   A+            
Sbjct: 661 PWETSELPADLSWKKIAKPVMNHYMEATDGSFIEEKESAMVWHHQEADH----------- 709

Query: 345 EGGRETLESWTRKDLL---------ELICIEMGK---ERKYTGVSKSKMVEHLLKLV-SM 485
                +  SW  K+LL         E + ++ G+   E K  GVSK K+VEHL+  + + 
Sbjct: 710 -----SFGSWQAKELLDHLESVLTNEPVVVKRGQHIVEVKPQGVSKGKVVEHLIATMRNT 764

Query: 486 KGLR 497
           KG R
Sbjct: 765 KGKR 768


>sp|P12791|CP2BA_MOUSE Cytochrome P450 2B10 OS=Mus musculus
           GN=Cyp2b10 PE=1 SV=1
          Length = 500

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
 Frame = +3

Query: 168 QYTHKQVYQICWVAQMTPPKVTQFEPTAGVYFSGSYTAMVG-HRSLAER-QEILYKTSQG 341
           +YT +Q  ++  +   T   ++ F       FSG      G HR +++  QE+L      
Sbjct: 189 EYTDRQFLRLLELFYQTFSLISSFSSQMFELFSGFLKYFPGAHRQISKNLQELLDYIGHS 248

Query: 342 MEGGRETLESWTRKDLLELICIEMGKER 425
           +E  + TL+    +D +++  + M KE+
Sbjct: 249 VERHKATLDPSVPRDFIDIYLLRMEKEK 276


>sp|O15910|RIR2_TRYBB Ribonucleoside-diphosphate reductase small
           chain OS=Trypanosoma brucei brucei GN=RNR2 PE=2 SV=1
          Length = 337

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
 Frame = +3

Query: 165 PQYTHKQVYQICWVAQMT--PPKVTQFEPTAGVYFSGSYTA------------MVGHRSL 302
           P    K  + I W+   T  P ++  F    G++FSGS+ A            +     L
Sbjct: 148 PCIEKKAKWAIEWIGSQTSFPTRLVAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNEL 207

Query: 303 AERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKY 431
             R E L+     +   +  +    R  +LE+IC  +  ER++
Sbjct: 208 ISRDEGLHTDFACLLYEKYIVNKLPRDRVLEIICNAVSIEREF 250


>sp|Q8CWM2|TRMD_THEEB tRNA (guanine-N(1)-)-methyltransferase
           OS=Thermosynechococcus elongatus (strain BP-1) GN=trmD
           PE=3 SV=1
          Length = 237

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 309 RQEILYKTSQGMEGGRETLESWTR-KDLLELICIEMGKERKYTGVSKSKMVEHLL 470
           R+E++Y T QG    ++ L  W+R +D L ++C        Y GV + ++VEHL+
Sbjct: 79  RREVIYVTPQGQPLTQQHLWHWSRERDQLVILC------GHYEGVDE-RVVEHLV 126


>sp|P04167|CP2B2_RAT Cytochrome P450 2B2 OS=Rattus norvegicus
           GN=Cyp2b2 PE=1 SV=2
          Length = 491

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +3

Query: 171 YTHKQVYQICWVAQMTPPKVTQFEPTAGVYFSGSYTAMVG-HRSLAER-QEILYKTSQGM 344
           YT +Q  ++  +   T   ++ F      +FSG      G HR +++  QEIL      +
Sbjct: 190 YTDRQFLRLLELFYRTFSLLSSFSSQVFEFFSGFLKYFPGAHRQISKNLQEILDYIGHIV 249

Query: 345 EGGRETLESWTRKDLLELICIEMGKER 425
           E  R TL+    +D ++   + M KE+
Sbjct: 250 EKHRATLDPSAPRDFIDTYLLRMEKEK 276


>sp|P00176|CP2B1_RAT Cytochrome P450 2B1 OS=Rattus norvegicus
           GN=Cyp2b1 PE=1 SV=1
          Length = 491

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +3

Query: 171 YTHKQVYQICWVAQMTPPKVTQFEPTAGVYFSGSYTAMVG-HRSLAER-QEILYKTSQGM 344
           YT +Q  ++  +   T   ++ F      +FSG      G HR +++  QEIL      +
Sbjct: 190 YTDRQFLRLLELFYRTFSLLSSFSSQVFEFFSGFLKYFPGAHRQISKNLQEILDYIGHIV 249

Query: 345 EGGRETLESWTRKDLLELICIEMGKER 425
           E  R TL+    +D ++   + M KE+
Sbjct: 250 EKHRATLDPSAPRDFIDTYLLRMEKEK 276
tr_hit_id Q6Z2D6
Definition tr|Q6Z2D6|Q6Z2D6_ORYSJ Os08g0220600 protein OS=Oryza sativa subsp. japonica
Align length 64
Score (bit) 83.2
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956948|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_B07, 5'
         (608 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6Z2D6|Q6Z2D6_ORYSJ Os08g0220600 protein OS=Oryza sativa subs...    83   1e-14
tr|B8BBY4|B8BBY4_ORYSI Putative uncharacterized protein OS=Oryza...    83   1e-14
tr|A3BQR4|A3BQR4_ORYSJ Putative uncharacterized protein OS=Oryza...    83   1e-14
tr|A7Q6D8|A7Q6D8_VITVI Chromosome chr11 scaffold_56, whole genom...    80   7e-14
tr|A7NUL4|A7NUL4_VITVI Chromosome chr18 scaffold_1, whole genome...    79   2e-13
tr|B6SH64|B6SH64_MAIZE Putative uncharacterized protein OS=Zea m...    78   3e-13
tr|Q9SUM4|Q9SUM4_ARATH Putative uncharacterized protein AT4g3020...    70   9e-11
tr|Q8GUH6|Q8GUH6_ARATH Putative uncharacterized protein At4g3020...    70   9e-11
tr|Q3E9U4|Q3E9U4_ARATH Uncharacterized protein At4g30200.3 OS=Ar...    70   9e-11
tr|Q67IU4|Q67IU4_ORYSJ Os02g0152500 protein OS=Oryza sativa subs...    67   8e-10
tr|A2X0Z8|A2X0Z8_ORYSI Putative uncharacterized protein OS=Oryza...    67   8e-10
tr|A0SQ41|A0SQ41_TRIMO VIL2 protein OS=Triticum monococcum subsp...    64   9e-09
tr|A0SQ38|A0SQ38_TRIMO VIL2 protein OS=Triticum monococcum subsp...    64   9e-09
tr|Q84N40|Q84N40_ARATH Putative uncharacterized protein OS=Arabi...    44   0.006
tr|Q5BPT4|Q5BPT4_ARATH Putative uncharacterized protein OS=Arabi...    44   0.006
tr|O64618|O64618_ARATH Putative uncharacterized protein At2g1888...    44   0.006
tr|A1DW35|A1DW35_ARATH VIN3-like 3 protein OS=Arabidopsis thalia...    44   0.006
tr|B4N985|B4N985_DROWI GK10924 OS=Drosophila willistoni GN=GK109...    35   3.4  
tr|A1C5V8|A1C5V8_ASPCL Autophagy ubiquitin-activating enzyme Apg...    35   4.4  
tr|A9P879|A9P879_POPTR Putative uncharacterized protein OS=Popul...    34   5.8  

>tr|Q6Z2D6|Q6Z2D6_ORYSJ Os08g0220600 protein OS=Oryza sativa subsp.
           japonica GN=P0691F12.23 PE=2 SV=1
          Length = 630

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           SL +R+E++Y+ SQ  +G  E L+ WTR+DLLELIC E+GKERKYT V KSKM+ +LLKL
Sbjct: 10  SLKDRRELVYEVSQWPQGASEILQCWTRRDLLELICAELGKERKYTNVPKSKMIAYLLKL 69

Query: 477 VSMK 488
           V  K
Sbjct: 70  VLRK 73


>tr|B8BBY4|B8BBY4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28271 PE=4 SV=1
          Length = 630

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           SL +R+E++Y+ SQ  +G  E L+ WTR+DLLELIC E+GKERKYT V KSKM+ +LLKL
Sbjct: 10  SLKDRRELVYEVSQWPQGASEILQCWTRRDLLELICAELGKERKYTNVPKSKMIAYLLKL 69

Query: 477 VSMK 488
           V  K
Sbjct: 70  VLRK 73


>tr|A3BQR4|A3BQR4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025386 PE=4 SV=1
          Length = 641

 Score = 83.2 bits (204), Expect = 1e-14
 Identities = 39/64 (60%), Positives = 50/64 (78%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           SL +R+E++Y+ SQ  +G  E L+ WTR+DLLELIC E+GKERKYT V KSKM+ +LLKL
Sbjct: 21  SLKDRRELVYEVSQWPQGASEILQCWTRRDLLELICAELGKERKYTNVPKSKMIAYLLKL 80

Query: 477 VSMK 488
           V  K
Sbjct: 81  VLRK 84


>tr|A7Q6D8|A7Q6D8_VITVI Chromosome chr11 scaffold_56, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031355001
           PE=4 SV=1
          Length = 639

 Score = 80.5 bits (197), Expect = 7e-14
 Identities = 33/67 (49%), Positives = 54/67 (80%)
 Frame = +3

Query: 300 LAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKLV 479
           + E++E++Y  S+   GG E L+SW+R+++L+++C EMGKERKYTG++K K++EHLL++V
Sbjct: 1   MEEKRELVYAVSKWSRGGPEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIEHLLRVV 60

Query: 480 SMKGLRE 500
           S K  R+
Sbjct: 61  SEKNSRQ 67


>tr|A7NUL4|A7NUL4_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015095001
           PE=4 SV=1
          Length = 646

 Score = 79.0 bits (193), Expect = 2e-13
 Identities = 43/104 (41%), Positives = 61/104 (58%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           SL E++E++++ +Q  +   E L S+TR++LLE+IC EMGKERKYTG +K +M+EHLLKL
Sbjct: 48  SLGEKRELVHEIAQWSKDAPEILRSFTRRELLEIICAEMGKERKYTGFTKFRMIEHLLKL 107

Query: 477 VSMKGLREXXXXXXXXXXXXLMPPSSQPTAPQSLLRRQRKAGRP 608
           +S K                    +S P   Q   +RQRK   P
Sbjct: 108 ISKKSKNRTDNSI-----------ASSPAKTQIGSKRQRKKENP 140


>tr|B6SH64|B6SH64_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 635

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 34/64 (53%), Positives = 52/64 (81%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           SL ++++++Y+ ++  +G  E L+ WTR++LLELIC+E+GKERKYT V K+KM+ +LLKL
Sbjct: 10  SLMDKRQLVYEVARWPQGAVEILKCWTRRELLELICVELGKERKYTNVPKAKMIAYLLKL 69

Query: 477 VSMK 488
           VS K
Sbjct: 70  VSRK 73


>tr|Q9SUM4|Q9SUM4_ARATH Putative uncharacterized protein AT4g30200
           OS=Arabidopsis thaliana GN=VIL2 PE=2 SV=1
          Length = 714

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 30/68 (44%), Positives = 52/68 (76%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           S+ E+++++Y+ S+      E L++W+R+++L+++C EMGKERKYTG++K K++E LLK+
Sbjct: 19  SVDEKRQLVYELSKQSHLAAEVLQAWSRQEILQILCAEMGKERKYTGLTKVKIIETLLKI 78

Query: 477 VSMKGLRE 500
           VS K   E
Sbjct: 79  VSEKNSGE 86


>tr|Q8GUH6|Q8GUH6_ARATH Putative uncharacterized protein At4g30200
           (At4g30200) OS=Arabidopsis thaliana GN=At4g30200 PE=2
           SV=1
          Length = 685

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 30/68 (44%), Positives = 52/68 (76%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           S+ E+++++Y+ S+      E L++W+R+++L+++C EMGKERKYTG++K K++E LLK+
Sbjct: 2   SVDEKRQLVYELSKQSHLAAEVLQAWSRQEILQILCAEMGKERKYTGLTKVKIIETLLKI 61

Query: 477 VSMKGLRE 500
           VS K   E
Sbjct: 62  VSEKNSGE 69


>tr|Q3E9U4|Q3E9U4_ARATH Uncharacterized protein At4g30200.3
           OS=Arabidopsis thaliana GN=At4g30200 PE=4 SV=1
          Length = 702

 Score = 70.1 bits (170), Expect = 9e-11
 Identities = 30/68 (44%), Positives = 52/68 (76%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           S+ E+++++Y+ S+      E L++W+R+++L+++C EMGKERKYTG++K K++E LLK+
Sbjct: 19  SVDEKRQLVYELSKQSHLAAEVLQAWSRQEILQILCAEMGKERKYTGLTKVKIIETLLKI 78

Query: 477 VSMKGLRE 500
           VS K   E
Sbjct: 79  VSEKNSGE 86


>tr|Q67IU4|Q67IU4_ORYSJ Os02g0152500 protein OS=Oryza sativa subsp.
           japonica GN=P0463E12.2-1 PE=2 SV=1
          Length = 749

 Score = 67.0 bits (162), Expect = 8e-10
 Identities = 34/106 (32%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
 Frame = +3

Query: 297 SLAERQEILYKTSQGMEGGRETLESWTRKDLLELICIEMGKERKYTGVSKSKMVEHLLKL 476
           S+ E++E++ + S+  E   + L+SW+R++++E++C ++G+ERKYTG+SK +M+E+L ++
Sbjct: 19  SVDEKRELVRELSKRPESAPDKLQSWSRREIVEILCADLGRERKYTGLSKQRMLEYLFRV 78

Query: 477 VSMKGLREXXXXXXXXXXXXLMPPSSQPTAP--QSLLRRQRKAGRP 608
           V+ K                   P+ +P     QS  +RQRK+  P
Sbjct: 79  VTGKS-----SGGGVVEHVQEKEPTPEPNTANHQSPAKRQRKSDNP 119