DK956988 |
Clone id |
TST39A01NGRL0027_C23 |
Library |
TST39 |
Length |
650 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_C23. 5' end sequence. |
Accession |
DK956988 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1559Contig1 |
Sequence |
CGTTTATCCAGAAAGAGCAGCGATGGCAGCCTCCTTGCTCTGCCCCCGCTTGCCTACCGC GGCCAACAGCACCAGTTGCACCACAGACCTCTCCTCCCGCCTCGCATTCTCGCCTTCCTC GCTTGCTCTTCGACTTCCCTCTCGCCCACACTCGCAGCAGCATGGCATCTGGAAAGTGGT GGCCATGGCTCCTCCGAAGCCTTCAGGAAAGGCCAAGAAGGTGGTGGCTGTTGTCAAGCT CGCTCTGGAAGCTGGTAAAGCCACCCCTGCTCCGCCAGTCGGGCCTGCTCTTGGTTCAAA GGGTGTGAATATCATGGCATTCTGCAAGGAGTACAATGCAAAGACCGCTGACAAAGCAGG CTATGTCATACCAGTTGAAATTACAGTTTTTGATGATAAAAGCTTTACCTTTGTGTTAAA GACGCCCCCTGCATCCATTTTACTTCTGAAAGCTGCGGGAGCAGAAAGAGGTTCAAATAA CCCTCAAAGTGAAAAAGTAGGAAAGGTAACTGTTGACCAAGTAAGGGCTATAGCAACTGA AAAGCTTCCAGATTTGAATTGCACAACAATTGAGTCTGCTATGAGGATAATTGCTGGAAC TGCTGCAAACATGGGCATTGACATTGACCCACCCATTCTAAAAAGAAAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31164 |
Definition |
sp|P31164|RK11_SPIOL 50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea |
Align length |
129 |
Score (bit) |
234.0 |
E-value |
4.0e-61 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK956988|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_C23, 5' (650 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31164|RK11_SPIOL 50S ribosomal protein L11, chloroplastic OS... 234 4e-61 sp|Q9MAP3|RK11_ARATH 50S ribosomal protein L11, chloroplastic OS... 231 3e-60 sp|Q31QK3|RL11_SYNE7 50S ribosomal protein L11 OS=Synechococcus ... 179 1e-44 sp|Q5N3N9|RL11_SYNP6 50S ribosomal protein L11 OS=Synechococcus ... 177 4e-44 sp|P60102|RL11_GLOVI 50S ribosomal protein L11 OS=Gloeobacter vi... 176 7e-44 sp|B0JNQ4|RL11_MICAN 50S ribosomal protein L11 OS=Microcystis ae... 176 1e-43 sp|O78412|RK11_GUITH 50S ribosomal protein L11, chloroplastic OS... 175 2e-43 sp|Q3MA19|RL11_ANAVT 50S ribosomal protein L11 OS=Anabaena varia... 174 4e-43 sp|Q8YLJ8|RL11_ANASP 50S ribosomal protein L11 OS=Anabaena sp. (... 174 4e-43 sp|A2BUI1|RL11_PROM5 50S ribosomal protein L11 OS=Prochlorococcu... 173 6e-43 sp|P36237|RL11_SYNY3 50S ribosomal protein L11 OS=Synechocystis ... 173 8e-43 sp|Q7V479|RL11_PROMM 50S ribosomal protein L11 OS=Prochlorococcu... 173 8e-43 sp|A5GWK2|RL11_SYNR3 50S ribosomal protein L11 OS=Synechococcus ... 172 1e-42 sp|Q0I6K7|RL11_SYNS3 50S ribosomal protein L11 OS=Synechococcus ... 172 1e-42 sp|A5GPD5|RL11_SYNPW 50S ribosomal protein L11 OS=Synechococcus ... 172 1e-42 sp|Q2JM51|RL11_SYNJB 50S ribosomal protein L11 OS=Synechococcus ... 172 1e-42 sp|Q7V381|RL11_PROMP 50S ribosomal protein L11 OS=Prochlorococcu... 172 2e-42 sp|Q2JTQ6|RL11_SYNJA 50S ribosomal protein L11 OS=Synechococcus ... 171 2e-42 sp|Q8DM28|RL11_THEEB 50S ribosomal protein L11 OS=Thermosynechoc... 171 4e-42 sp|Q119S6|RL11_TRIEI 50S ribosomal protein L11 OS=Trichodesmium ... 170 5e-42 sp|A2BNZ9|RL11_PROMS 50S ribosomal protein L11 OS=Prochlorococcu... 170 7e-42 sp|A8G2L1|RL11_PROM2 50S ribosomal protein L11 OS=Prochlorococcu... 170 7e-42 sp|A3PAS2|RL11_PROM0 50S ribosomal protein L11 OS=Prochlorococcu... 170 7e-42 sp|Q31CX7|RL11_PROM9 50S ribosomal protein L11 OS=Prochlorococcu... 169 1e-41 sp|Q97EG5|RL11_CLOAB 50S ribosomal protein L11 OS=Clostridium ac... 169 2e-41 sp|Q3AGS9|RL11_SYNSC 50S ribosomal protein L11 OS=Synechococcus ... 168 2e-41 sp|A5IJW7|RL11_THEP1 50S ribosomal protein L11 OS=Thermotoga pet... 167 3e-41 sp|Q2JFI9|RL11_FRASC 50S ribosomal protein L11 OS=Frankia sp. (s... 167 3e-41 sp|Q7VDY5|RL11_PROMA 50S ribosomal protein L11 OS=Prochlorococcu... 167 4e-41 sp|Q0RRT6|RL11_FRAAA 50S ribosomal protein L11 OS=Frankia alni (... 167 4e-41
>sp|P31164|RK11_SPIOL 50S ribosomal protein L11, chloroplastic OS=Spinacia oleracea GN=rpl11 PE=1 SV=1 Length = 224
Score = 234 bits (596), Expect = 4e-61 Identities = 112/129 (86%), Positives = 124/129 (96%) Frame = +2
Query: 263 TPAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASIL 442 TPAPPVGPALGSKGVNIMAFCK+YNA+TADK G+VIPVEITVFDDKSFTF+LKTPPAS+L Sbjct: 90 TPAPPVGPALGSKGVNIMAFCKDYNARTADKPGFVIPVEITVFDDKSFTFILKTPPASVL 149
Query: 443 LLKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGID 622 LLKA+GAE+GS +PQ EKVGK+T+DQ+R IATEKLPDLNCTTIESAMRIIAGTAANMGID Sbjct: 150 LLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNCTTIESAMRIIAGTAANMGID 209
Query: 623 IDPPILKRK 649 IDPPIL +K Sbjct: 210 IDPPILVKK 218
>sp|Q9MAP3|RK11_ARATH 50S ribosomal protein L11, chloroplastic OS=Arabidopsis thaliana GN=RPL11 PE=1 SV=1 Length = 222
Score = 231 bits (588), Expect = 3e-60 Identities = 110/129 (85%), Positives = 122/129 (94%) Frame = +2
Query: 263 TPAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASIL 442 TPAPPVGPALGSKGVNIMAFCK+YNA+TADKAGY+IPVEITVFDDKSFTF+LKTPPAS+L Sbjct: 88 TPAPPVGPALGSKGVNIMAFCKDYNARTADKAGYIIPVEITVFDDKSFTFILKTPPASVL 147
Query: 443 LLKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGID 622 LLKAAG E+GS +PQ +KVG +T+DQ+R IA EKLPDLNCTTIESAMRIIAGTAANMGID Sbjct: 148 LLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNCTTIESAMRIIAGTAANMGID 207
Query: 623 IDPPILKRK 649 IDPPIL+ K Sbjct: 208 IDPPILEPK 216
>sp|Q31QK3|RL11_SYNE7 50S ribosomal protein L11 OS=Synechococcus elongatus (strain PCC 7942) GN=rplK PE=3 SV=1 Length = 141
Score = 179 bits (453), Expect = 1e-44 Identities = 85/120 (70%), Positives = 98/120 (81%) Frame = +2
Query: 266 PAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASILL 445 PAPPVGPALG GVNIMAFCKEYNA+T DK G VIPVEI+VF+D+SFTF+LKTPPAS+L+ Sbjct: 20 PAPPVGPALGQHGVNIMAFCKEYNARTQDKVGLVIPVEISVFEDRSFTFILKTPPASVLI 79
Query: 446 LKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDI 625 KAAG ERGS NP KVGK+T Q+R IA KLPDLN +E+AMRI+ GTA NMG+ I Sbjct: 80 AKAAGIERGSGNPNKTKVGKITTAQLREIAETKLPDLNTKNVEAAMRIVEGTARNMGVTI 139
>sp|Q5N3N9|RL11_SYNP6 50S ribosomal protein L11 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplK PE=3 SV=1 Length = 141
Score = 177 bits (449), Expect = 4e-44 Identities = 84/120 (70%), Positives = 97/120 (80%) Frame = +2
Query: 266 PAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASILL 445 PAPPVGPALG GVNIMAFCKEYNA+T DK G VIPVEI+VF+D+SFTF+LKTPPAS+L+ Sbjct: 20 PAPPVGPALGQHGVNIMAFCKEYNARTQDKVGLVIPVEISVFEDRSFTFILKTPPASVLI 79
Query: 446 LKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDI 625 KAAG ERGS NP KVGK+T Q+R IA KLPD N +E+AMRI+ GTA NMG+ I Sbjct: 80 AKAAGIERGSGNPNKTKVGKITTAQLREIAETKLPDFNTKNVEAAMRIVEGTARNMGVTI 139
>sp|P60102|RL11_GLOVI 50S ribosomal protein L11 OS=Gloeobacter violaceus GN=rplK PE=3 SV=1 Length = 141
Score = 176 bits (447), Expect = 7e-44 Identities = 86/120 (71%), Positives = 98/120 (81%) Frame = +2
Query: 266 PAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASILL 445 PAPPVGPALG GVNIM FCKEYNA+TAD+ G VIPVEITVF+D+SFTFVLKTPPAS+LL Sbjct: 20 PAPPVGPALGQHGVNIMMFCKEYNARTADQVGMVIPVEITVFEDRSFTFVLKTPPASVLL 79
Query: 446 LKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDI 625 KAAG E+GS P EK G +T Q+R IA +KLPDLN +E+AM+IIAGTA NMGI I Sbjct: 80 TKAAGVEKGSGKPNKEKAGTITGAQLRQIAEQKLPDLNANDVEAAMKIIAGTARNMGIVI 139
>sp|B0JNQ4|RL11_MICAN 50S ribosomal protein L11 OS=Microcystis aeruginosa (strain NIES-843) GN=rplK PE=3 SV=1 Length = 141
Score = 176 bits (445), Expect = 1e-43 Identities = 84/120 (70%), Positives = 99/120 (82%) Frame = +2
Query: 266 PAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASILL 445 PAPPVGPALG GVNIMAFCK+YNAKTAD+AG +IPVEI+VF+D+SFTFVLKTPPAS+L+ Sbjct: 20 PAPPVGPALGQHGVNIMAFCKDYNAKTADQAGMIIPVEISVFEDRSFTFVLKTPPASVLI 79
Query: 446 LKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDI 625 KAAG ERGSN P + V +T DQ+R IA K+PDLN IE+AM I+AGTA NMG+ I Sbjct: 80 RKAAGVERGSNEPNKKFVATITRDQLREIAQTKMPDLNANDIEAAMNIVAGTARNMGVKI 139
>sp|O78412|RK11_GUITH 50S ribosomal protein L11, chloroplastic OS=Guillardia theta GN=rpl11 PE=3 SV=1 Length = 141
Score = 175 bits (444), Expect = 2e-43 Identities = 84/121 (69%), Positives = 100/121 (82%) Frame = +2
Query: 263 TPAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASIL 442 TPAPPVGPALG +GVNI+ FCK+YNA+TADKAG +IPVEITV++DKS+TFVLKTPPAS+L Sbjct: 19 TPAPPVGPALGQRGVNIVMFCKDYNARTADKAGLIIPVEITVYEDKSYTFVLKTPPASVL 78
Query: 443 LLKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGID 622 L KAAG ++GS NP+ +VG VT QV IA KLPDLN +ESA+RII GTA NMGI Sbjct: 79 LAKAAGVQKGSGNPKKTQVGSVTKKQVEEIAQTKLPDLNTRRLESAIRIIEGTAKNMGIG 138
Query: 623 I 625 + Sbjct: 139 V 139
>sp|Q3MA19|RL11_ANAVT 50S ribosomal protein L11 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplK PE=3 SV=1 Length = 141
Score = 174 bits (441), Expect = 4e-43 Identities = 83/120 (69%), Positives = 99/120 (82%) Frame = +2
Query: 266 PAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASILL 445 PAPPVGPALG GVNIM FCKEYNAKTAD+AG VIPVEI+V++D+SFTFVLKTPPAS+L+ Sbjct: 20 PAPPVGPALGQHGVNIMMFCKEYNAKTADQAGMVIPVEISVYEDRSFTFVLKTPPASVLI 79
Query: 446 LKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDI 625 KAA ERGSN P +KVG +T Q+R IA KLPDLN I++AM+I+AGTA NMG+ + Sbjct: 80 RKAAKIERGSNEPNKKKVGTITTAQLREIAQTKLPDLNANDIDAAMKIVAGTARNMGVTV 139
>sp|Q8YLJ8|RL11_ANASP 50S ribosomal protein L11 OS=Anabaena sp. (strain PCC 7120) GN=rplK PE=3 SV=1 Length = 141
Score = 174 bits (441), Expect = 4e-43 Identities = 83/120 (69%), Positives = 99/120 (82%) Frame = +2
Query: 266 PAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASILL 445 PAPPVGPALG GVNIM FCKEYNAKTAD+AG VIPVEI+V++D+SFTFVLKTPPAS+L+ Sbjct: 20 PAPPVGPALGQHGVNIMMFCKEYNAKTADQAGMVIPVEISVYEDRSFTFVLKTPPASVLI 79
Query: 446 LKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDI 625 KAA ERGSN P +KVG +T Q+R IA KLPDLN I++AM+I+AGTA NMG+ + Sbjct: 80 RKAAKIERGSNEPNKKKVGTITTAQLREIAQTKLPDLNANDIDAAMKIVAGTARNMGVTV 139
>sp|A2BUI1|RL11_PROM5 50S ribosomal protein L11 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplK PE=3 SV=1 Length = 141
Score = 173 bits (439), Expect = 6e-43 Identities = 82/120 (68%), Positives = 97/120 (80%) Frame = +2
Query: 266 PAPPVGPALGSKGVNIMAFCKEYNAKTADKAGYVIPVEITVFDDKSFTFVLKTPPASILL 445 PAPPVGPALG GVNIMAFCKEYNA+T DKAG+VIPVEI+VF+D+SFTF+ KTPPAS+L+ Sbjct: 20 PAPPVGPALGQHGVNIMAFCKEYNARTQDKAGFVIPVEISVFEDRSFTFITKTPPASVLI 79
Query: 446 LKAAGAERGSNNPQSEKVGKVTVDQVRAIATEKLPDLNCTTIESAMRIIAGTAANMGIDI 625 KAAG E+GS VG ++ Q+ IA KLPDLNCT+IESAM++I GTA NMGI I Sbjct: 80 TKAAGIEKGSGESSKGSVGNISKSQLEEIAKTKLPDLNCTSIESAMKVIEGTARNMGISI 139
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NZB8 |
Definition |
tr|A9NZB8|A9NZB8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
129 |
Score (bit) |
237.0 |
E-value |
4.0e-61 |
Report |
|