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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956991
Clone id TST39A01NGRL0027_D02
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_D02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGCACTCGCTGATCATCTCTAGACCGGCAGTAGCAATGGCGAGCTCTGTGGCTTCTTTGG
CAGTTGCTGCTCCCTCGTGCGCCCCGGCAGAGAGCCTATCTAAGAGCTTCTCCGGCCTCA
GGCCCACTACCCTCGCTGCCCCCAAGAGCGCCAACCCGCTCTCCATCTCCAACGGCAGCC
GCGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCCT
ACTTGCCGCCTTTGACAAGCGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGGAAGG
GCTGGACCCCCTGCATTGAGTTCGACAAAATCGGAAGCGTATACCGAGAGCACTTCCATG
GCAGCGGCTACTACGATGGGCGATACTGGGTGATGTGGAAGTTGCCCATGTTTGGCTGCC
AAGATGCCGCCGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTACCCCGAAGCCT
TCATCCGCGTGCGGGCTTTGACGCCAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCCA
GAAGCCCTCTGTCTAGAAATCAATGATTTTATCCTCGGAGACAACGACAATGCGT
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 138
Score (bit) 162.0
E-value 2.0e-40
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956991|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_D02, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   162   2e-40
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   159   4e-40
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   159   4e-40
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   160   6e-40
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   158   8e-40
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   155   2e-39
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   159   2e-39
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   161   3e-39
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   159   3e-39
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   156   3e-39
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   159   3e-39
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   157   4e-39
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   156   4e-39
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   155   6e-39
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   155   8e-39
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   154   1e-38
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   155   1e-38
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   156   1e-38
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   158   2e-38
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   154   2e-38
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   156   2e-38
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   157   3e-38
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   154   3e-38
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   155   3e-38
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   155   4e-38
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   155   4e-38
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   156   5e-38
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha...   154   5e-38
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha...   154   5e-38
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   154   7e-38

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  162 bits (409), Expect(2) = 2e-40
 Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 6/138 (4%)
 Frame = +3

Query: 96  LSKSFSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTS 260
           L+  F+GL+     P T  A    + L  SNG RV  M VW P   KK+ETLSYLPPL+ 
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLP-SNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 261 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 437
           E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 438 LREIAECAKEYPEAFIRV 491
           ++E+ EC KEYP AFIRV
Sbjct: 141 MKEVGECKKEYPNAFIRV 158



 Score = 24.6 bits (52), Expect(2) = 2e-40
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKP 547
           GFD  RQVQ   F+V KP
Sbjct: 160 GFDNIRQVQCISFIVAKP 177


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  159 bits (402), Expect(2) = 4e-40
 Identities = 77/132 (58%), Positives = 92/132 (69%), Gaps = 4/132 (3%)
 Frame = +3

Query: 108 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 275
           F+GLR +    A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 276 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 455
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 456 CAKEYPEAFIRV 491
             K YPE F+R+
Sbjct: 146 AKKAYPEYFVRI 157



 Score = 26.6 bits (57), Expect(2) = 4e-40
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD KRQVQ   F+  KP+
Sbjct: 159 GFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  159 bits (402), Expect(2) = 4e-40
 Identities = 77/132 (58%), Positives = 92/132 (69%), Gaps = 4/132 (3%)
 Frame = +3

Query: 108 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 275
           F+GLR +    A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 276 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 455
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 456 CAKEYPEAFIRV 491
             K YPE F+R+
Sbjct: 146 AKKAYPEYFVRI 157



 Score = 26.6 bits (57), Expect(2) = 4e-40
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD KRQVQ   F+  KP+
Sbjct: 159 GFDNKRQVQCISFIAYKPT 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  160 bits (405), Expect(2) = 6e-40
 Identities = 68/108 (62%), Positives = 84/108 (77%)
 Frame = +3

Query: 168 SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 347
           SNG RV  M VW P   KKFETLSYLPPLT EQ+ ++VD+++R GW PCIEF K+G VYR
Sbjct: 49  SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYR 108

Query: 348 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRV 491
           E+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K YP+ F R+
Sbjct: 109 EYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRI 156



 Score = 24.6 bits (52), Expect(2) = 6e-40
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKP 547
           GFD  RQVQ   FL  KP
Sbjct: 158 GFDNTRQVQCISFLTYKP 175


>sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1
          Length = 177

 Score =  158 bits (399), Expect(2) = 8e-40
 Identities = 76/133 (57%), Positives = 92/133 (69%), Gaps = 5/133 (3%)
 Frame = +3

Query: 108 FSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIA 272
           F+GLR     P T  A K+ + L  SNG +VS M VW P   KKFETLSYLPPL+ E +A
Sbjct: 26  FNGLRSSVAFPATRKANKNLSTLP-SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLA 84

Query: 273 KQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           K+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ 
Sbjct: 85  KEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVE 144

Query: 453 ECAKEYPEAFIRV 491
           E  K YPE F+R+
Sbjct: 145 EAKKAYPEYFVRI 157



 Score = 26.6 bits (57), Expect(2) = 8e-40
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD KRQVQ   F+  KP+
Sbjct: 159 GFDNKRQVQCISFIAYKPT 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  155 bits (393), Expect(2) = 2e-39
 Identities = 70/109 (64%), Positives = 84/109 (77%), Gaps = 1/109 (0%)
 Frame = +3

Query: 168 SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWTPCIEFD-KIGSVY 344
           SNG RV  M VW P   KKFETLSYLPPL+SEQ+AK+VD+++RK   PC+EF+ + G VY
Sbjct: 52  SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVY 111

Query: 345 REHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRV 491
           REH    GYYDGRYW MWKLPMFGC D++ VL+E+ EC K YP AFIR+
Sbjct: 112 REHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRI 160



 Score = 27.7 bits (60), Expect(2) = 2e-39
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKP 547
           GFD KRQVQ+  F+  KP
Sbjct: 162 GFDNKRQVQIISFIAYKP 179


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  159 bits (402), Expect(2) = 2e-39
 Identities = 74/133 (55%), Positives = 96/133 (72%), Gaps = 5/133 (3%)
 Frame = +3

Query: 108 FSGLRPTTL--AAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 275
           F+GL+ +    A  K+ N ++   SNG RV+ M VW P   KKFETLSYLP LT  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 276 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 453 ECAKEYPEAFIRV 491
           EC KEYP AFIR+
Sbjct: 144 ECKKEYPNAFIRI 156



 Score = 23.9 bits (50), Expect(2) = 2e-39
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKP 547
           GFD  RQVQ   F+  KP
Sbjct: 158 GFDNTRQVQCISFIAYKP 175


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  161 bits (407), Expect = 3e-39
 Identities = 79/136 (58%), Positives = 98/136 (72%), Gaps = 8/136 (5%)
 Frame = +3

Query: 108 FSGLR-----PTTLAAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQ 266
           F+GL+     PTT    K AN  S   SNG RV  M VW P   KK+ETLSYLPPLT  Q
Sbjct: 25  FTGLKSNAAFPTT----KKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQ 80

Query: 267 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 443
           +AK+VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 81  LAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 140

Query: 444 EIAECAKEYPEAFIRV 491
           E+AEC KEYP+A+IR+
Sbjct: 141 ELAECKKEYPQAWIRI 156


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  159 bits (403), Expect(2) = 3e-39
 Identities = 75/136 (55%), Positives = 99/136 (72%), Gaps = 4/136 (2%)
 Frame = +3

Query: 96  LSKSFSGLRPTT-LAAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQ 266
           L+  F+GL+ +      K  N ++   SNGSRV+ M VW P   KKFETLSYLPPLT EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 267 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 443
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 444 EIAECAKEYPEAFIRV 491
           E+AEC  EYPEAFIR+
Sbjct: 141 EVAECKAEYPEAFIRI 156



 Score = 23.1 bits (48), Expect(2) = 3e-39
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPSV 553
           GFD  RQVQ   F+   P V
Sbjct: 158 GFDNVRQVQCISFIASTPKV 177


>sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1
          Length = 177

 Score =  156 bits (394), Expect(2) = 3e-39
 Identities = 73/121 (60%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
 Frame = +3

Query: 135 AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQVDFMVRKGWT 308
           A  K+ N LS   SNG RVS M VW P   KKFETLSYLPPL+ E +AK+VD+++R  W 
Sbjct: 37  ATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWV 96

Query: 309 PCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIR 488
           PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E  K YPE F+R
Sbjct: 97  PCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVR 156

Query: 489 V 491
           +
Sbjct: 157 I 157



 Score = 26.6 bits (57), Expect(2) = 3e-39
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD KRQVQ   F+  KP+
Sbjct: 159 GFDNKRQVQCISFIAYKPT 177
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 132
Score (bit) 249.0
E-value 1.0e-69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956991|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_D02, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   249   1e-69
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   174   3e-45
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   173   7e-45
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   170   5e-44
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   168   1e-43
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   166   9e-43
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   166   9e-43
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   162   5e-40
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   160   5e-40
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   160   6e-40
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   160   6e-40
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   162   9e-40
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   164   2e-39
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   157   4e-39
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   163   4e-39
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   157   5e-39
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   158   7e-39
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   156   9e-39
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   158   9e-39
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   156   9e-39
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   158   1e-38
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   155   2e-38
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   155   2e-38
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   159   3e-38
tr|Q9ZWG6|Q9ZWG6_HORVU Ribulose bisphosphate carboxylase small c...   161   3e-38
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   161   3e-38
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   154   3e-38
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   160   4e-38
tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos t...   158   4e-38
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   156   6e-38

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  249 bits (637), Expect(2) = 1e-69
 Identities = 114/132 (86%), Positives = 124/132 (93%)
 Frame = +3

Query: 96  LSKSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAK 275
           LSKSFSGL+  TL APK ANPL+ISNGSR+SAMLVWKPYDNKKFETLSYLPPLT++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 276 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 455
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 456 CAKEYPEAFIRV 491
           CAKEYP AFIRV
Sbjct: 142 CAKEYPTAFIRV 153



 Score = 38.5 bits (88), Expect(2) = 1e-69
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFDAKRQVQV+GFLV+KPS
Sbjct: 155 GFDAKRQVQVAGFLVKKPS 173


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  174 bits (441), Expect(2) = 3e-45
 Identities = 82/133 (61%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K FSGL+ TTL+A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 453 ECAKEYPEAFIRV 491
           EC + +P  ++RV
Sbjct: 147 ECKQSFPSCWVRV 159



 Score = 32.0 bits (71), Expect(2) = 3e-45
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD+K+QVQ+ GFLV +P+
Sbjct: 161 GFDSKKQVQICGFLVARPN 179


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  173 bits (438), Expect(2) = 7e-45
 Identities = 82/133 (61%), Positives = 96/133 (72%), Gaps = 3/133 (2%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K FSGL+ TTL A K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 453 ECAKEYPEAFIRV 491
           EC + +P  ++RV
Sbjct: 147 ECKQSFPSCWVRV 159



 Score = 32.0 bits (71), Expect(2) = 7e-45
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD+K+QVQ+ GFLV +P+
Sbjct: 161 GFDSKKQVQICGFLVARPN 179


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  170 bits (430), Expect(2) = 5e-44
 Identities = 78/133 (58%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K+FSGL+P TL + K+    ++ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 453 ECAKEYPEAFIRV 491
           EC  ++P  ++RV
Sbjct: 152 ECKSQFPSCWVRV 164



 Score = 32.3 bits (72), Expect(2) = 5e-44
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD+K+QVQ+ GFLV +P+
Sbjct: 166 GFDSKKQVQICGFLVSRPN 184


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  168 bits (426), Expect(2) = 1e-43
 Identities = 78/133 (58%), Positives = 96/133 (72%), Gaps = 3/133 (2%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K+FSGL+  TL + K+    S+ NGSRV  M VW P    KFET SYLPPLT +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 453 ECAKEYPEAFIRV 491
           EC  ++P  ++RV
Sbjct: 182 ECKSQFPSCWVRV 194



 Score = 32.3 bits (72), Expect(2) = 1e-43
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD+K+QVQ+ GFLV +P+
Sbjct: 196 GFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  166 bits (420), Expect(2) = 9e-43
 Identities = 77/133 (57%), Positives = 94/133 (70%), Gaps = 3/133 (2%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K+FSGL+  TL   KS    S+ NGSRV  M VW P    KFET SYLPPL+ +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 453 ECAKEYPEAFIRV 491
           EC   YP  ++RV
Sbjct: 152 ECKTSYPSCWVRV 164



 Score = 32.0 bits (71), Expect(2) = 9e-43
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD+K+QVQ+ GFLV +P+
Sbjct: 166 GFDSKKQVQICGFLVARPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  166 bits (419), Expect(2) = 9e-43
 Identities = 76/133 (57%), Positives = 96/133 (72%), Gaps = 3/133 (2%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K+FSGL+  TL + ++    S+ NGSRV  M VW P    KFET SYLPPLT ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 452
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 453 ECAKEYPEAFIRV 491
           EC  ++P  ++RV
Sbjct: 151 ECKTQFPSCWVRV 163



 Score = 32.3 bits (72), Expect(2) = 9e-43
 Identities = 12/19 (63%), Positives = 17/19 (89%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD+K+QVQ+ GFLV +P+
Sbjct: 165 GFDSKKQVQICGFLVSRPN 183


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  162 bits (410), Expect(2) = 5e-40
 Identities = 76/138 (55%), Positives = 96/138 (69%), Gaps = 6/138 (4%)
 Frame = +3

Query: 96  LSKSFSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTS 260
           L+  F+GL+     P T  A    + L  SNG RV  M VW P   KK+ETLSYLPPL+ 
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLP-SNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 261 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 437
           E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 438 LREIAECAKEYPEAFIRV 491
           ++E+ EC KEYP AFIRV
Sbjct: 141 MKEVGECKKEYPNAFIRV 158



 Score = 26.6 bits (57), Expect(2) = 5e-40
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKP 547
           GFD+ RQVQ   F+V KP
Sbjct: 160 GFDSVRQVQCISFIVSKP 177


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  160 bits (406), Expect(2) = 5e-40
 Identities = 73/130 (56%), Positives = 91/130 (70%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K+FSGL+  T+ + K+ N  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 461
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 462 KEYPEAFIRV 491
           K +P  F+RV
Sbjct: 152 KTFPGCFVRV 161



 Score = 28.1 bits (61), Expect(2) = 5e-40
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD  +QVQ+ GFLV +P+
Sbjct: 163 GFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  160 bits (405), Expect(2) = 6e-40
 Identities = 74/130 (56%), Positives = 91/130 (70%)
 Frame = +3

Query: 102 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFETLSYLPPLTSEQIAKQV 281
           K+FSGL+ +TL + K+ +  S+ NGSRV  M VW P    KFET SYLPPL+ + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 282 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 461
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 462 KEYPEAFIRV 491
           K +P  F+RV
Sbjct: 152 KTFPGCFVRV 161



 Score = 28.1 bits (61), Expect(2) = 6e-40
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 494 GFDAKRQVQVSGFLVQKPS 550
           GFD  +QVQ+ GFLV +P+
Sbjct: 163 GFDNVKQVQICGFLVARPN 181