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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK956996
Clone id TST39A01NGRL0027_D07
Library
Length 645
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_D07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAACGGTTTATCAGATCAGGGCTGGTTCTACTTTCCTCTTGTGAAGGACATGGGTGCCGG
TCAGAGCCGTGATGGTGAGCTTCGCTCAGATTCTGAAGAAGAAGAGGAGGAGGAAGAAGA
CGAACAAGAAATTAAGCAGAAGTCTGCTGTTTCACCCGCTTCTTCCTCGAAATCCAGCAC
GCGGCAAAGTTTTGCTTCTGCAAGCTCCAAGGATGGGCTCCAAAGCATCGGCTCTAAATT
CGATTCTCTTACCTTGGCAGGCAAGCGAGTGGCCAAAGGCCCTCAAAAGGCCAAGCTTTA
CCGCCATCTTGGAGGTAATACACCTAAAGCACAATGGGTTGTTGCGGACAAAGCTGTTTC
TTGGGAGTTTACCAGAGATGGAGATGATCATGACGAAGATGAAGATGACGACGGGGATGG
TGTGAGTGGATCGTGGAAGACATGGTATCTTTTGGTTGGTAGCAGGGTGAGTGCTCGTGT
TGGTGAGAAGCTGCAAGCAAAATTCTTTGGAGAGCAGCTGCGCGTTGACTTTGTGTACTA
TGGTGTGTGGGCACTGAAGTTCTCCACTCGCTTAGAGTTTCAAGACTTTGAGACAGAGTT
TCGGAATTGTTTGTTTGAGAATACCTACATGCTAGAGGCTACTGA
■■Homology search results ■■ -
sp_hit_id P40781
Definition sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus
Align length 46
Score (bit) 58.2
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956996|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_D07, 5'
         (645 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus GN=CY...    58   4e-08
sp|Q07E00|CAZA2_ORNAN F-actin-capping protein subunit alpha-2 OS...    32   3.7  
sp|A4D7S9|CAZA2_MACEU F-actin-capping protein subunit alpha-2 OS...    30   8.3  

>sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus
           GN=CYPRO4 PE=2 SV=1
          Length = 501

 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 26/46 (56%), Positives = 35/46 (76%)
 Frame = +2

Query: 506 FGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLEAT 643
           FG+Q RVDFV  GVWALKF    ++++F T F++CLFEN Y L+A+
Sbjct: 2   FGDQRRVDFVDSGVWALKFMRDEDYREFVTRFQSCLFENVYGLKAS 47


>sp|Q07E00|CAZA2_ORNAN F-actin-capping protein subunit alpha-2
           OS=Ornithorhynchus anatinus GN=CAPZA2 PE=3 SV=3
          Length = 286

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 214 WAPKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 315
           W PK+R+  +F +L ++A+  RP + +    SWR
Sbjct: 88  WDPKNRVSFKFDHLRKEATDPRPQEPENAVESWR 121


>sp|A4D7S9|CAZA2_MACEU F-actin-capping protein subunit alpha-2
           OS=Macropus eugenii GN=CAPZA2 PE=3 SV=1
          Length = 286

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 220 PKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 315
           PK+R+  +F +L ++A+  RP +G+    SWR
Sbjct: 90  PKNRVSFKFDHLRKEATDPRPCEGENAIESWR 121
tr_hit_id Q6VVW7
Definition tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum
Align length 117
Score (bit) 110.0
E-value 1.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK956996|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_D07, 5'
         (645 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2...   110   1e-22
tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4...   109   1e-22
tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome...   108   3e-22
tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis...   108   3e-22
tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana GN=At...   107   5e-22
tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella paten...   105   2e-21
tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=de...   100   1e-19
tr|B7FFC8|B7FFC8_MEDTR Putative uncharacterized protein (Fragmen...    98   4e-19
tr|Q6ETM2|Q6ETM2_ORYSJ Os02g0178500 protein OS=Oryza sativa subs...    92   2e-17
tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            92   4e-17
tr|Q9SZB7|Q9SZB7_ARATH Dem-like protein OS=Arabidopsis thaliana ...    91   5e-17
tr|A9U2M9|A9U2M9_PHYPA Predicted protein OS=Physcomitrella paten...    87   9e-16
tr|B6UDP8|B6UDP8_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            85   3e-15
tr|B6UBL0|B6UBL0_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            85   3e-15
tr|A9SNF7|A9SNF7_PHYPA Predicted protein OS=Physcomitrella paten...    78   5e-13
tr|Q6K4M9|Q6K4M9_ORYSJ Os02g0789600 protein OS=Oryza sativa subs...    75   3e-12
tr|A2XAF1|A2XAF1_ORYSI Putative uncharacterized protein OS=Oryza...    75   3e-12
tr|A3AC52|A3AC52_ORYSJ Putative uncharacterized protein OS=Oryza...    66   2e-09
tr|A7P9J1|A7P9J1_VITVI Chromosome chr3 scaffold_8, whole genome ...    58   6e-07
tr|A5BIB3|A5BIB3_VITVI Putative uncharacterized protein OS=Vitis...    37   1.4  
tr|B6MJD4|B6MJD4_BRAFL Putative uncharacterized protein OS=Branc...    36   2.3  
tr|A6DXQ1|A6DXQ1_9RHOB Putative cytochrome P450 OS=Roseovarius s...    35   3.9  

>tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2
           SV=1
          Length = 639

 Score =  110 bits (274), Expect = 1e-22
 Identities = 52/117 (44%), Positives = 71/117 (60%)
 Frame = +2

Query: 293 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 472
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 473 ARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLEAT 643
            RV   +Q K FG+Q RVDFV  GVWALKF    E+++F T+F++CLFEN Y +EAT
Sbjct: 141 VRVSTDMQLKMFGDQRRVDFVDNGVWALKFFVDDEYRNFITKFQDCLFENVYGMEAT 197


>tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4
           SV=1
          Length = 639

 Score =  109 bits (273), Expect = 1e-22
 Identities = 51/117 (43%), Positives = 71/117 (60%)
 Frame = +2

Query: 293 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 472
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 473 ARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLEAT 643
            RV   +Q K FG+Q R+DFV  GVWALKF    E+++F T+F++CLFEN Y +EAT
Sbjct: 141 VRVSTDMQLKMFGDQRRIDFVDNGVWALKFFVDDEYRNFITKFQDCLFENVYGMEAT 197


>tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014814001
           PE=4 SV=1
          Length = 632

 Score =  108 bits (270), Expect = 3e-22
 Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
 Frame = +2

Query: 281 PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 457
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 458 GSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLE 637
           GS+V A+V  ++Q K FG+Q RVDFV  GVWA+KF +  E+++F  +F++CLFENTY  E
Sbjct: 128 GSKVRAKVALEMQLKTFGDQCRVDFVSQGVWAMKFFSEDEYRNFVGKFQDCLFENTYGFE 187

Query: 638 AT 643
           +T
Sbjct: 188 ST 189


>tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043502 PE=4 SV=1
          Length = 632

 Score =  108 bits (270), Expect = 3e-22
 Identities = 55/122 (45%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
 Frame = +2

Query: 281 PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 457
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 458 GSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLE 637
           GS+V A+V  ++Q K FG+Q RVDFV  GVWA+KF +  E+++F  +F++CLFENTY  E
Sbjct: 128 GSKVRAKVALEMQLKTFGDQCRVDFVSQGVWAMKFFSEDEYRNFVGKFQDCLFENTYGFE 187

Query: 638 AT 643
           +T
Sbjct: 188 ST 189


>tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana
           GN=At3g19240 PE=4 SV=1
          Length = 648

 Score =  107 bits (268), Expect = 5e-22
 Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
 Frame = +2

Query: 293 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVS---GSWKTWYLLVGS 463
           KLYRH+GGNTPKA+W+V+DK  S++F +                    G    W+L VG+
Sbjct: 90  KLYRHIGGNTPKAKWIVSDKMTSYKFVKTSSVDGEDIDDYDDCEESGEGGESFWFLGVGT 149

Query: 464 RVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLEAT 643
           +V ARV   +Q K FG+Q RVDFV  GVWALKF T  +++ F T F++ LFEN Y + A+
Sbjct: 150 KVKARVSTDMQLKMFGDQRRVDFVSNGVWALKFLTDEDYRKFVTRFQDYLFENVYKIRAS 209


>tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198241 PE=4 SV=1
          Length = 546

 Score =  105 bits (262), Expect = 2e-21
 Identities = 52/126 (41%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
 Frame = +2

Query: 287 KAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWK-------TW 445
           + KLY+H+GG TP A+WV  +K + +EF R                 G WK       +W
Sbjct: 3   RVKLYQHVGGTTPAAKWVPVEKQIGYEFVREDEEDD----------DGEWKLNTKNFRSW 52

Query: 446 YLLVGSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENT 625
            LLVG +  A V + LQAKFF +QLRVDF++ GVWA+KF    ++  F  ++ NCLFEN 
Sbjct: 53  LLLVGGKFGAPVDDNLQAKFFDDQLRVDFIWKGVWAMKFMNSTDYHTFVEKYNNCLFENV 112

Query: 626 YMLEAT 643
           + L  T
Sbjct: 113 HGLPPT 118


>tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=dem
           PE=2 SV=1
          Length = 644

 Score =  100 bits (248), Expect = 1e-19
 Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
 Frame = +2

Query: 218 LQSIGSKFDSLTLA-GKRVAKGP---QKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXX 385
           L  + +K  +L L  G   AK P      KLY H+GGNT  ++WVV+DK  ++ F +   
Sbjct: 58  LDDVEAKLKALKLKYGTPHAKTPTAKNAVKLYLHVGGNTANSKWVVSDKVTAYSFVKSGS 117

Query: 386 XXXXXXXXXXXXVSGSWKTWYLLVGSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFS 565
                          +W  W L +GS+V A++ E LQ K F EQ RVDFV  GVWA++F 
Sbjct: 118 EDGSDDDENEETEENAW--WVLKIGSKVRAKIDENLQLKAFKEQKRVDFVANGVWAVRFF 175

Query: 566 TRLEFQDFETEFRNCLFENTYMLEA 640
              E++ F   +++CLFENTY  EA
Sbjct: 176 GEEEYKAFIDLYQSCLFENTYGFEA 200


>tr|B7FFC8|B7FFC8_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 237

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 4/146 (2%)
 Frame = +2

Query: 218 LQSIGSKFDSLTLAGKRVAKGPQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXX 397
           +  + +K  +L L      + P   KL+ H+GGN+P A+WV+++K  ++ F +       
Sbjct: 47  VDEVEAKLKALKLKYAVKNQNPNAVKLHLHIGGNSPNAKWVISEKFTTYSFVKTRCVGGN 106

Query: 398 XXXXXXXXVSGSWKT----WYLLVGSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFS 565
                     G        W L +GS++ ++VG ++Q K   +Q RVDF+  GVWA+KF 
Sbjct: 107 SDDDEDEEEDGDDDADEGFWVLKIGSKIRSKVGGEMQLKTLADQRRVDFIAKGVWAMKFF 166

Query: 566 TRLEFQDFETEFRNCLFENTYMLEAT 643
           T  +F  F  +F+NC FENT+  EAT
Sbjct: 167 TEQDFDAFLVKFQNCTFENTHGYEAT 192


>tr|Q6ETM2|Q6ETM2_ORYSJ Os02g0178500 protein OS=Oryza sativa subsp.
           japonica GN=P0544B02.5 PE=2 SV=1
          Length = 649

 Score = 92.4 bits (228), Expect = 2e-17
 Identities = 48/117 (41%), Positives = 70/117 (59%)
 Frame = +2

Query: 293 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 472
           KLY H+GG++P A+W+++D+  +  F R                + S   W L+VGS++ 
Sbjct: 96  KLYLHIGGSSPSARWIISDRLAAASFVRAGDDDDDD--------APSSGPWCLVVGSKIR 147

Query: 473 ARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLEAT 643
           ARVG +LQ K F  Q RVDFV  GVWALKF     + +F  ++++CLFEN+Y + AT
Sbjct: 148 ARVGPELQLKTFPAQRRVDFVADGVWALKFLHADGYPNFYAKYQSCLFENSYGVAAT 204


>tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1
          Length = 655

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 49/117 (41%), Positives = 67/117 (57%)
 Frame = +2

Query: 293 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 472
           KLY H+GG++P A+W+V+D+  +  F R                +     W L+VGS++ 
Sbjct: 95  KLYLHIGGSSPSAKWIVSDRLAAASFVRAGAGAGDGDDEDDDAPAAGGP-WSLVVGSKIR 153

Query: 473 ARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEFRNCLFENTYMLEAT 643
           ARVG +LQ K F  Q RVDFV  GVWALKF     F DF  +  +C+FEN+Y + AT
Sbjct: 154 ARVGPELQLKAFPAQRRVDFVADGVWALKFLHSDGFGDFCAKHHSCMFENSYGVAAT 210