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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957035
Clone id TST39A01NGRL0027_E22
Library
Length 617
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_E22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAGTGGAGTTTGTCATGAGGGCAGTGTCTGCAGGTCGCGTCTTGTCTGGTGAGCTTTTG
TGGTGGGAGCTGTTGGTCGACGCTTCGGAATGCTGTGCTAGTCGTTTGAAGAAGAGCTTT
TGGGGATCGGGAACAGGCGCAATGAAGAACATTGCAGTGCAACGTAGACAGGCTCAGGCA
GTCTGTCTCCTAGATAGTACCATGTGGAGCATGGGCAAGGAAGCATATGCTGCCCTTGTC
CTAAACATGAAGAAGCTGTTATTGGAGGCTAGATGTACCTACGGACCTGTTTCTGCTAGC
ACAGGGGAATGCTGCAGCACCTTTTCTGATTTTTTTTCAAGAGGCGTTGCAGGGAGAAGT
CAAATTTCGTCACCTTTTCACAAGTTGATGTCCTTGGATGCCTTACCTAGTGATGGGTTT
TCTGCAATGAAACTCCTTAAGAAAATGCAGCAGAGCTGTGGTACAACCTTCTGCAGTGTC
TCTTCCCATGGTTTGCCAGAGAAGAACAGGAACGTTTATGACAAGGTTTACACAGATATC
TACCAGGGGCCTGGAACTGACGCCTATCAAGCACAGGCAGAACCAAGGATCAAAGTCAAA
CGGGTAAGCATTTTGTA
■■Homology search results ■■ -
sp_hit_id A6QLU5
Definition sp|A6QLU5|ZN184_BOVIN Zinc finger protein 184 OS=Bos taurus
Align length 61
Score (bit) 31.6
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957035|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_E22, 5'
         (617 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6QLU5|ZN184_BOVIN Zinc finger protein 184 OS=Bos taurus GN=Z...    32   3.4  
sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protei...    32   3.4  
sp|O14628|ZN195_HUMAN Zinc finger protein 195 OS=Homo sapiens GN...    31   4.5  
sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homol...    31   4.5  
sp|Q53G44|IF44L_HUMAN Interferon-induced protein 44-like OS=Homo...    31   5.8  
sp|Q9JKU3|IF172_RAT Intraflagellar transport protein 172 homolog...    31   5.8  
sp|Q6VH22|IF172_MOUSE Intraflagellar transport protein 172 homol...    31   5.8  
sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subu...    30   7.6  
sp|P34504|YMV2_CAEEL Uncharacterized protein K04H4.2 OS=Caenorha...    30   9.9  
sp|Q8FR00|SYM_COREF Methionyl-tRNA synthetase OS=Corynebacterium...    30   9.9  
sp|Q96NE9|FRMD6_HUMAN FERM domain-containing protein 6 OS=Homo s...    30   9.9  
sp|Q884X9|FLIE_PSESM Flagellar hook-basal body complex protein f...    30   9.9  

>sp|A6QLU5|ZN184_BOVIN Zinc finger protein 184 OS=Bos taurus
           GN=ZNF184 PE=2 SV=1
          Length = 752

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = -2

Query: 538 YLCKPCHK--RSCSSLANHGKRHC-RRLYHSSAAFS*GVSLQKTHH*VRHPRTSTCEKVT 368
           Y C  C K  R CSSLA H K H   + YH +       +  ++ H  +H R  T EK  
Sbjct: 615 YECAECGKAFRHCSSLAQHQKTHTEEKPYHCNKCEK---AFSQSSHLAQHQRIHTGEKPY 671

Query: 367 K 365
           K
Sbjct: 672 K 672


>sp|O60566|BUB1B_HUMAN Mitotic checkpoint serine/threonine-protein
           kinase BUB1 beta OS=Homo sapiens GN=BUB1B PE=1 SV=3
          Length = 1050

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
 Frame = +1

Query: 364 ISSPFHKLMSLDALPSDGFSAM-------KLLKKMQQSCGTTFCSVSS 486
           +S+PFH++MSL  LPSD    +       K  +  Q +CGT +    S
Sbjct: 618 VSTPFHEIMSLKDLPSDPERLLPEEDLDVKTSEDQQTACGTIYSQTLS 665


>sp|O14628|ZN195_HUMAN Zinc finger protein 195 OS=Homo sapiens
           GN=ZNF195 PE=2 SV=2
          Length = 629

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 538 YLCKPCHK--RSCSSLANHGKRHCRRLYHSSAAFS*GVSLQKTHH*VRHPRTSTCEKVTK 365
           Y C+ C K  R+CSSL+NH + H     ++      G   ++     +H +T T EK  K
Sbjct: 466 YQCEECGKVFRTCSSLSNHKRTHSEEKPYTCEEC--GNIFKQLSDLTKHKKTHTGEKPYK 523

Query: 364 FD 359
            D
Sbjct: 524 CD 525


>sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog
            OS=Homo sapiens GN=IFT172 PE=1 SV=2
          Length = 1749

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = +1

Query: 379  HKLMSLDA--LPSDGFSAMKLLKKMQQSCGTTFCSVSSHGLPE--KNRNVYDKVYTDIYQ 546
            HK ++L A  L  +G SA  L   +Q            HG P   +N N+Y +++TD+  
Sbjct: 1443 HKYVALYATHLIREGSSAQALALYVQ------------HGAPANPQNFNIYKRIFTDMVS 1490

Query: 547  GPGT---DAYQAQAEPR 588
             PGT   +AY + A+ R
Sbjct: 1491 SPGTNCAEAYHSWADLR 1507


>sp|Q53G44|IF44L_HUMAN Interferon-induced protein 44-like OS=Homo
           sapiens GN=IFI44L PE=2 SV=3
          Length = 452

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
 Frame = -3

Query: 516 NVPVLLWQTMGRDTAEG---CTTALLHFLK-------EFHCRKPIT 409
           ++P +L  TMG D AEG   C   + H LK       +F+ RKPIT
Sbjct: 255 SLPFMLCDTMGLDGAEGAGLCMDDIPHILKGCMPDRYQFNSRKPIT 300


>sp|Q9JKU3|IF172_RAT Intraflagellar transport protein 172 homolog
            OS=Rattus norvegicus GN=Ift172 PE=1 SV=1
          Length = 1749

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +1

Query: 487  HGLPE--KNRNVYDKVYTDIYQGPGT---DAYQAQAEPR 588
            HG P   +N N+Y +++TD+   PGT   +AY + A+ R
Sbjct: 1469 HGAPANPQNFNIYKRIFTDMVSSPGTNNAEAYHSWADLR 1507


>sp|Q6VH22|IF172_MOUSE Intraflagellar transport protein 172 homolog
            OS=Mus musculus GN=Ift172 PE=1 SV=1
          Length = 1749

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +1

Query: 487  HGLPE--KNRNVYDKVYTDIYQGPGT---DAYQAQAEPR 588
            HG P   +N N+Y +++TD+   PGT   +AY + A+ R
Sbjct: 1469 HGAPANPQNFNIYKRIFTDMVSSPGTNNAEAYHSWADLR 1507


>sp|O74964|RSC1_SCHPO Chromatin structure-remodeling complex subunit
           rsc1 OS=Schizosaccharomyces pombe GN=rsc1 PE=1 SV=1
          Length = 803

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 131 PDPQKLFFKRLAQHSEASTNSSHHKSSPDKTRPADTALMTNST 3
           P     + ++ + HSE S++SS+H SS   T   ++ +M  ST
Sbjct: 568 PSVMPTYARKTSSHSERSSHSSYHNSSHVPTAAFNSPIMRTST 610


>sp|P34504|YMV2_CAEEL Uncharacterized protein K04H4.2
           OS=Caenorhabditis elegans GN=K04H4.2 PE=1 SV=6
          Length = 1446

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
 Frame = -3

Query: 234 GSICFL-AHAPHGTI*ETDCLSLSTL-HC----------NVLHCACSRSPKALLQTTSTA 91
           G  C L  H P GT+ ET C S S   HC          N  H AC  SP  +++ + TA
Sbjct: 583 GKCCKLNIHCPDGTVPETSCQSASNHDHCPSSSHKCTLLNKEHFACCYSPGLVVEGSVTA 642


>sp|Q8FR00|SYM_COREF Methionyl-tRNA synthetase OS=Corynebacterium
           efficiens GN=metG PE=3 SV=1
          Length = 613

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 377 KGDEI*LLPATPLEKKSEKVLQHSPVLAETGP 282
           K + I ++P TPL K +  V +  P L ETGP
Sbjct: 575 KWERIDMVPGTPLNKPAPLVTKLDPELGETGP 606
tr_hit_id B4GJX5
Definition tr|B4GJX5|B4GJX5_DROPE GL25966 OS=Drosophila persimilis
Align length 89
Score (bit) 37.4
E-value 0.71
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957035|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_E22, 5'
         (617 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4GJX5|B4GJX5_DROPE GL25966 OS=Drosophila persimilis GN=GL259...    37   0.71 
tr|Q29P16|Q29P16_DROPS GA10918 OS=Drosophila pseudoobscura pseud...    37   1.2  
tr|A9TBV0|A9TBV0_PHYPA Predicted protein OS=Physcomitrella paten...    35   3.5  
tr|B4N5N4|B4N5N4_DROWI GK17894 OS=Drosophila willistoni GN=GK178...    35   3.5  
tr|A1SRP3|A1SRP3_PSYIN ABC transporter foroligopeptide/dipeptide...    35   4.6  
tr|Q0CIX5|Q0CIX5_ASPTN Putative uncharacterized protein OS=Asper...    34   6.0  
tr|B4LK18|B4LK18_DROVI GJ21568 OS=Drosophila virilis GN=GJ21568 ...    34   7.8  
tr|A2ESZ2|A2ESZ2_TRIVA Surface antigen BspA-like OS=Trichomonas ...    34   7.8  

>tr|B4GJX5|B4GJX5_DROPE GL25966 OS=Drosophila persimilis GN=GL25966
            PE=4 SV=1
          Length = 1008

 Score = 37.4 bits (85), Expect = 0.71
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = +1

Query: 268  ARCTYGPVSASTGECCSTFSDFFSRGVAGRSQISSPFHKLMSLDALPSDGFSAMKLLKKM 447
            A  T GP  +S+   C        R +   +Q+ S  HK  ++  LP +  ++  L  K 
Sbjct: 757  AALTAGPPPSSSASACPYLLKQAGRSI---TQLLSASHKRNTMGTLPGEASTSTALPPKR 813

Query: 448  QQSCGTTFCSVSSHGLPEKNRNVYDKVYT 534
            Q+SCG    S +     EK   +  K YT
Sbjct: 814  QRSCGPRLSSTNPVDSTEKKFKILIKNYT 842


>tr|Q29P16|Q29P16_DROPS GA10918 OS=Drosophila pseudoobscura
            pseudoobscura GN=GA10918 PE=4 SV=2
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 24/86 (27%), Positives = 37/86 (43%)
 Frame = +1

Query: 277  TYGPVSASTGECCSTFSDFFSRGVAGRSQISSPFHKLMSLDALPSDGFSAMKLLKKMQQS 456
            T GP  +S+   C        R +   +Q+ S  HK  ++  LP +  ++  L  K Q+S
Sbjct: 762  TAGPPPSSSASACPYLLKQAGRSI---TQLLSASHKRNTMGTLPGEASTSTALPPKRQRS 818

Query: 457  CGTTFCSVSSHGLPEKNRNVYDKVYT 534
            CG    S +     EK   +  K YT
Sbjct: 819  CGPRLSSTNPVDSTEKKFKILIKNYT 844


>tr|A9TBV0|A9TBV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90719 PE=4 SV=1
          Length = 177

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = -2

Query: 205 TWYYLGDRLPEPVYVALQCSSLRLFPIPKSSSSN 104
           TW  L  RLP  V V+LQC +LR F   K S +N
Sbjct: 33  TWLCLQRRLPRTVAVSLQCPALRFFGSKKESEAN 66


>tr|B4N5N4|B4N5N4_DROWI GK17894 OS=Drosophila willistoni GN=GK17894
           PE=4 SV=1
          Length = 352

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
 Frame = +1

Query: 220 EAYAALVLNMKKLLLEARCTYGPVSASTGECCSTFSDFFSR---GVAGRSQISSPFHKLM 390
           EAY  L    K+ + +AR T    SA++    +T + ++SR   G  G    SS + +  
Sbjct: 51  EAYEVLSDARKRRIYDARATLHKSSATSSSSSNTSNGYYSRYRSGAGGGGSTSSSYGRDY 110

Query: 391 SLDALPS-------DGFSAMKLLKKMQQSCGTTFCSVSSHGLPEKNRNVYDKVYTD 537
             D  PS         F+   L +      GT F     H L EK R +YD+   D
Sbjct: 111 DYDYYPSRRSGNRYQAFTFRNLFE------GTPF-----HKLFEKKRRIYDEYGKD 155


>tr|A1SRP3|A1SRP3_PSYIN ABC transporter foroligopeptide/dipeptide
           ATP-binding protein OS=Psychromonas ingrahamii (strain
           37) GN=Ping_0292 PE=3 SV=1
          Length = 530

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
 Frame = +1

Query: 7   EFVMRAVSAGRVLSGELLWWELLVDASECCASR-LKKSFWGSGT---GAMKNIAVQRRQA 174
           + ++ A  AG +   EL   +L++ A+    S  LKK+FWG  T    A+KN+++Q  Q+
Sbjct: 252 KLLLNAEPAGEMT--ELTAPQLILSAANINVSYPLKKNFWGKTTRSLQAVKNVSLQIHQS 309

Query: 175 QAVCLLDSTMWSMGKEAYAALVLNMKK 255
           + V ++  +    GK   A  +L + K
Sbjct: 310 ETVAIVGES--GSGKSTLAQAILQLNK 334


>tr|Q0CIX5|Q0CIX5_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_06359
           PE=4 SV=1
          Length = 1064

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -2

Query: 214 PCSTWYYLGDRLPEPVYVALQC-SSLRLFP-IPKSSSSND*HSIPKRRPTAPTTKAHQT 44
           PCS+WY+    L  P+  +L   S++   P +P SS S+  + IP    + PTT +  T
Sbjct: 78  PCSSWYFFSSPLLLPISASLPLFSAMTNSPFLPSSSPSSQRNDIPTMADSTPTTTSTLT 136


>tr|B4LK18|B4LK18_DROVI GJ21568 OS=Drosophila virilis GN=GJ21568
           PE=4 SV=1
          Length = 352

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
 Frame = +1

Query: 220 EAYAALVLNMKKLLLEARCTYGPVSASTGECCSTFSDFFSRGVAGRSQISSPFHKLMSLD 399
           EAY  L    K+ + +AR T    SAS+    ST + ++SR  +G    +S   +    D
Sbjct: 51  EAYEVLSDARKRRIYDARATLHKTSASSSSSSST-NGYYSRYRSGSGNGASSTSRDYDYD 109

Query: 400 ALPSDGFSAMKLLKKMQQ--SCGTTFCSVSSHGLPEKNRNVYDKVYTD 537
             PS   SA        Q  +    F     H L EK R +YD+   D
Sbjct: 110 YYPSYSSSAAGRRGNRYQAFTFRNLFEGTPFHKLFEKKRRIYDEYGKD 157


>tr|A2ESZ2|A2ESZ2_TRIVA Surface antigen BspA-like OS=Trichomonas
           vaginalis G3 GN=TVAG_474560 PE=4 SV=1
          Length = 853

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
 Frame = +1

Query: 208 SMGKEAY------AALVLNMKKLLLEARCTYGPVSASTGECCST-------------FSD 330
           S+GKE++       ++  N ++ +    C YG  S +T    ST             FS 
Sbjct: 402 SIGKESFYGCSSITSMSFNAQEFIFPDYCFYGCTSLTTINIASTRITLGSYSFAKCSFSR 461

Query: 331 FFSRG--VAGRSQISSPFHKLMSLDALPSDGFSAMKLLKKMQQSCGTTFCSVSSHGLPEK 504
           F   G  V+  S   S  H L +L      GF+  +LL+   +SC     S++S  +P  
Sbjct: 462 FGFSGNMVSIGSYCFSGCHNLQTLSISAGSGFNNNELLEGTFESC----TSLTSITIPTN 517

Query: 505 NRNVYDKVY 531
            +  YD+V+
Sbjct: 518 IQRFYDRVF 526