DK957036 |
Clone id |
TST39A01NGRL0027_E23 |
Library |
TST39 |
Length |
498 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_E23. 5' end sequence. |
Accession |
DK957036 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4Contig1 |
Sequence |
CGACGCTCTGGCAAGGAGCTTGAGAAGGAGCCTAAATTTTTGAAGAATGGAGATGCTGGT TTTGTCAAGATGATTCCTACCAAGCCCATGACTGTTGAGACCTTTTCAGAGTATCCTCCA CTTGGACGGTTTGCTGTTCGTGATATGAGGCAGACTGTTGCCGTGGGAGTCATCAAGGCA GTGGAAAAGAAGGATGCCTCTGGTGCCAAGGTTACTAAGGCTGCCCTGAAGAAGAAATGA ACCAGACTTTGTGATGGTAGTGGGTCTGGTAGTTTTTTGTGTGTTTTGATGCTTCGGATG ATATTATCTAGAGTGTTGCAGACATGGGTTTTGGATAGACGGTGGCGCGGTTTCGCTGTG CTTCCTCCTCTTACCGGCCTTTTCTATTTACATGAACTTTGCCTAAGTAACTGATAATGT AGACAACTATGTTGTTTTGTTTTCTCCTGAATATTATGTTGAGGCTTTTCCTTTAAAAAA AAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P25698 |
Definition |
sp|P25698|EF1A_SOYBN Elongation factor 1-alpha OS=Glycine max |
Align length |
68 |
Score (bit) |
130.0 |
E-value |
3.0e-30 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B1PID4 |
Definition |
tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens |
Align length |
131 |
Score (bit) |
143.0 |
E-value |
4.0e-33 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957036|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_E23, 5' (474 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) ... 143 4e-33 tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 136 6e-31 tr|A9SJB4|A9SJB4_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 133 5e-30 tr|Q14K72|Q14K72_PLAAC Translation elongation factor 1 alpha (Fr... 132 7e-30 tr|Q0VJA7|Q0VJA7_PLAAC Elongation factor 1 alpha (Fragment) OS=P... 132 7e-30 tr|A7PSZ7|A7PSZ7_VITVI Elongation factor 1-alpha OS=Vitis vinife... 132 7e-30 tr|A5C4C2|A5C4C2_VITVI Elongation factor 1-alpha OS=Vitis vinife... 132 7e-30 tr|A5B1I3|A5B1I3_VITVI Putative uncharacterized protein OS=Vitis... 132 7e-30 tr|A5AFS1|A5AFS1_VITVI Elongation factor 1-alpha OS=Vitis vinife... 132 7e-30 tr|A9SA16|A9SA16_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 132 1e-29 tr|A9SA12|A9SA12_PHYPA Predicted protein OS=Physcomitrella paten... 132 1e-29 tr|A9SA04|A9SA04_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 132 1e-29 tr|A9RGD1|A9RGD1_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 132 1e-29 tr|A9RGA5|A9RGA5_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 132 1e-29 tr|Q9AVT7|Q9AVT7_PICAB Elongation factor 1-alpha (Fragment) OS=P... 131 1e-29 tr|Q5ME93|Q5ME93_PSEMZ Translation elongation factor-1 alpha (Fr... 131 1e-29 tr|Q5ME78|Q5ME78_PSEMZ Translation elongation factor-1 alpha (Fr... 131 1e-29 tr|Q5J1K3|Q5J1K3_ELAGV Elongation factor 1-alpha OS=Elaeis guine... 131 1e-29 tr|A9P004|A9P004_PICSI Putative uncharacterized protein OS=Picea... 131 1e-29 tr|A9NWR1|A9NWR1_PICSI Elongation factor 1-alpha OS=Picea sitche... 131 1e-29 tr|A9NUF4|A9NUF4_PICSI Elongation factor 1-alpha OS=Picea sitche... 131 1e-29 tr|Q8H9B1|Q8H9B1_9ROSI Elongation factor 1-alpha OS=Bruguiera se... 131 2e-29 tr|Q84RU1|Q84RU1_AVIMR Elongation factor 1-alpha OS=Avicennia ma... 131 2e-29 tr|Q9ZRP9|Q9ZRP9_MALDO Elongation factor 1-alpha OS=Malus domest... 130 2e-29 tr|Q9XEW9|Q9XEW9_LILLO Elongation factor 1-alpha OS=Lilium longi... 130 2e-29 tr|Q8W0W2|Q8W0W2_ELAOL Elongation factor 1-alpha OS=Elaeis oleif... 130 2e-29 tr|Q6DNI3|Q6DNI3_SOYBN Elongation factor 1A SMV resistance-relat... 130 3e-29 tr|A9PH67|A9PH67_POPTR Elongation factor 1-alpha OS=Populus tric... 130 3e-29 tr|A5GZB0|A5GZB0_LITCN Elongation factor 1-alpha OS=Litchi chine... 130 3e-29 tr|Q207T3|Q207T3_9ASPA Elongation factor 1-alpha OS=Gymnadenia c... 129 6e-29
>tr|B1PID4|B1PID4_9CONI Putative elongation factor 1A (Fragment) OS=Cupressus sempervirens PE=2 SV=1 Length = 138
Score = 143 bits (361), Expect = 4e-33 Identities = 81/131 (61%), Positives = 92/131 (70%), Gaps = 13/131 (9%) Frame = +1
Query: 4 RSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKAV 183 RSGKELEKEPKFLKNGDAGFVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+V Sbjct: 1 RSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSV 60
Query: 184 EKKDASGXXXXXXXXXXXXXRLCDGS------GSGSFLCV-------LMLRMILSRVLQT 324 EKK+ +G L D + G S+LC+ L++R ++R +QT Sbjct: 61 EKKEPTG-AKVTKAAAKKKRSLVDCAVEEARHGHLSWLCLSRPIAQDLLVRCSVARRMQT 119
Query: 325 WVLDRRWRGFA 357 WVLDRRW A Sbjct: 120 WVLDRRWHHIA 130
>tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis thaliana PE=3 SV=1 Length = 967
Score = 136 bits (342), Expect = 6e-31 Identities = 77/134 (57%), Positives = 87/134 (64%), Gaps = 11/134 (8%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKE+EKEPKFLKNGDAG VKM PTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 369 RRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 428
Query: 181 VEKKDASGXXXXXXXXXXXXXRLCDGSGSGSF----------LCVLMLRMILSRVLQTWV 330 V+KKD +G + + S SF LC + R + WV Sbjct: 429 VDKKDPTG-----AKVTKAAVKKGESKDSVSFITIVWYLVACLCSCFVFSPSERCSRNWV 483
Query: 331 LDRRWRGFA-VLPP 369 LDRRWR + +LPP Sbjct: 484 LDRRWRIYTHILPP 497
Score = 125 bits (314), Expect = 1e-27 Identities = 60/68 (88%), Positives = 64/68 (94%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKE+EKEPKFLKNGDAG VKM PTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 887 RRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 946
Query: 181 VEKKDASG 204 V+KKD +G Sbjct: 947 VDKKDPTG 954
>tr|A9SJB4|A9SJB4_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_212963 PE=3 SV=1 Length = 447
Score = 133 bits (334), Expect = 5e-30 Identities = 65/68 (95%), Positives = 67/68 (98%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA Sbjct: 369 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 428
Query: 181 VEKKDASG 204 VEKK+ +G Sbjct: 429 VEKKEPTG 436
>tr|Q14K72|Q14K72_PLAAC Translation elongation factor 1 alpha (Fragment) OS=Platanus acerifolia GN=ef PE=2 SV=1 Length = 236
Score = 132 bits (333), Expect = 7e-30 Identities = 65/68 (95%), Positives = 66/68 (97%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 158 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 217
Query: 181 VEKKDASG 204 VEKKD SG Sbjct: 218 VEKKDPSG 225
>tr|Q0VJA7|Q0VJA7_PLAAC Elongation factor 1 alpha (Fragment) OS=Platanus acerifolia GN=efalpha PE=2 SV=1 Length = 199
Score = 132 bits (333), Expect = 7e-30 Identities = 65/68 (95%), Positives = 66/68 (97%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 121 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 180
Query: 181 VEKKDASG 204 VEKKD SG Sbjct: 181 VEKKDPSG 188
>tr|A7PSZ7|A7PSZ7_VITVI Elongation factor 1-alpha OS=Vitis vinifera GN=GSVIVT00023150001 PE=3 SV=1 Length = 399
Score = 132 bits (333), Expect = 7e-30 Identities = 65/68 (95%), Positives = 66/68 (97%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 321 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 380
Query: 181 VEKKDASG 204 VEKKD SG Sbjct: 381 VEKKDPSG 388
>tr|A5C4C2|A5C4C2_VITVI Elongation factor 1-alpha OS=Vitis vinifera GN=VITISV_044270 PE=3 SV=1 Length = 447
Score = 132 bits (333), Expect = 7e-30 Identities = 65/68 (95%), Positives = 66/68 (97%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 369 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 428
Query: 181 VEKKDASG 204 VEKKD SG Sbjct: 429 VEKKDPSG 436
>tr|A5B1I3|A5B1I3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026485 PE=4 SV=1 Length = 226
Score = 132 bits (333), Expect = 7e-30 Identities = 65/68 (95%), Positives = 66/68 (97%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 148 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 207
Query: 181 VEKKDASG 204 VEKKD SG Sbjct: 208 VEKKDPSG 215
>tr|A5AFS1|A5AFS1_VITVI Elongation factor 1-alpha OS=Vitis vinifera GN=GSVIVT00024491001 PE=3 SV=1 Length = 447
Score = 132 bits (333), Expect = 7e-30 Identities = 65/68 (95%), Positives = 66/68 (97%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPM VETFSEYPPLGRFAVRDMRQTVAVGVIK+ Sbjct: 369 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKS 428
Query: 181 VEKKDASG 204 VEKKD SG Sbjct: 429 VEKKDPSG 436
>tr|A9SA16|A9SA16_PHYPA Elongation factor 1-alpha OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_76520 PE=3 SV=1 Length = 447
Score = 132 bits (331), Expect = 1e-29 Identities = 64/68 (94%), Positives = 67/68 (98%) Frame = +1
Query: 1 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFSEYPPLGRFAVRDMRQTVAVGVIKA 180 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETF+EYPPLGRFAVRDMRQTVAVGVIKA Sbjct: 369 RRSGKELEKEPKFLKNGDAGFVKMIPTKPMTVETFAEYPPLGRFAVRDMRQTVAVGVIKA 428
Query: 181 VEKKDASG 204 VEKK+ +G Sbjct: 429 VEKKEPTG 436
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