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NBDC - LSDB Archive
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DK957050
Clone id TST39A01NGRL0027_F14
Library
Length 749
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_F14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAGGGAGAGTGATTGTACGCAGTATTCAGTATGGCCATCTCCATAGCCGCTTCCTCGGC
AGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCTTGTCAAAGAGCTTCTCTGGTCTCAA
GGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACCCGCTCGCCATCTCTAATGGCAGCCG
TGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTTCGAGACTCTGTCCTA
CTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGCAGGTGGACTTCATGGTCCGAAAAGG
CTGGACCCCTTGCATTGAGTTCGACAAAATCGGGAGCGTGTACCGAGAGCACTTCCACGG
CAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCCCATGTTTGGCTGCCA
AGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGAGTATCCTGAAACCTT
CATCCGCGTGCTTGGGCTTTGACGCTAAGAGGCAGGTGCAGGTCTCCGGCTTCCTTGTCC
AGAAAGCCCCTCTGTCTAAAACTTTTCTTAAAAGCAGCCAATTTAATTGGCATGGAATGC
CTGCTTCCCCATTTTCCCACTGGCCCCTAACAAGCTTTGTTCCTTATTGAACCTTTTGGT
GTCCCAGCCCCCTTTTTGCATAACATAAATGGAAAACAAACCTTTCCCAGGGGGGGGGGT
TTCCAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 137
Score (bit) 164.0
E-value 3.0e-41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957050|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_F14, 5'
         (724 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   164   3e-41
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   158   2e-40
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   161   4e-39
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   157   1e-38
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   159   1e-38
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   159   1e-38
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   159   1e-38
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   159   1e-38
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   159   2e-38
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   159   2e-38
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   157   2e-38
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   158   2e-38
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   158   3e-38
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   158   3e-38
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   157   4e-38
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   155   5e-38
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   157   6e-38
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   156   9e-38
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   156   1e-37
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   156   1e-37
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   155   2e-37
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   155   2e-37
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   155   2e-37
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   155   2e-37
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   155   3e-37
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   154   4e-37
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   154   4e-37
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   154   5e-37
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   154   6e-37
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   154   6e-37

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  164 bits (414), Expect(2) = 3e-41
 Identities = 76/137 (55%), Positives = 96/137 (70%), Gaps = 5/137 (3%)
 Frame = +2

Query: 95  LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 262
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 263 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 439
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 440 REIAECAKEYPETFIRV 490
           +E+ EC KEYP  FIRV
Sbjct: 142 KEVGECKKEYPNAFIRV 158



 Score = 25.0 bits (53), Expect(2) = 3e-41
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 492 LGFDAKRQVQVSGFLVQKAP 551
           +GFD  RQVQ   F+V K P
Sbjct: 159 IGFDNIRQVQCISFIVAKPP 178


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  158 bits (400), Expect(2) = 2e-40
 Identities = 77/133 (57%), Positives = 95/133 (71%), Gaps = 5/133 (3%)
 Frame = +2

Query: 107 FSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 274
           F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSSEQ+AK
Sbjct: 28  FTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAK 87

Query: 275 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 451
           +VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ 
Sbjct: 88  EVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELE 147

Query: 452 ECAKEYPETFIRV 490
           EC K YP  FIR+
Sbjct: 148 ECKKAYPSAFIRI 160



 Score = 28.1 bits (61), Expect(2) = 2e-40
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 492 LGFDAKRQVQVSGFLVQKAP 551
           +GFD KRQVQ+  F+  K P
Sbjct: 161 IGFDNKRQVQIISFIAYKPP 180


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  161 bits (407), Expect = 4e-39
 Identities = 73/129 (56%), Positives = 91/129 (70%)
 Frame = +2

Query: 104 SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 283
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 284 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 463
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 464 EYPETFIRV 490
            YP+ F R+
Sbjct: 148 AYPDYFNRI 156


>sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Hordeum vulgare PE=2 SV=1
          Length = 174

 Score =  157 bits (396), Expect(2) = 1e-38
 Identities = 69/131 (52%), Positives = 90/131 (68%), Gaps = 3/131 (2%)
 Frame = +2

Query: 107 FSGLKATT---LFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 277
           F GLK+T    +    + +  ++SNG R+  M VW     KKFETLSYLPPLS+E + KQ
Sbjct: 16  FQGLKSTAGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQ 75

Query: 278 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 457
           VD+++R  W PC+EF K+G ++REH    GYYDGRYW MWKLPMFGC DA  VL E+ E 
Sbjct: 76  VDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEV 135

Query: 458 AKEYPETFIRV 490
            KEYP+ ++R+
Sbjct: 136 KKEYPDAYVRI 146



 Score = 23.5 bits (49), Expect(2) = 1e-38
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 492 LGFDAKRQVQVSGFLVQKAP 551
           +GFD  RQVQ   F+  K P
Sbjct: 147 IGFDNMRQVQCVSFIAFKPP 166


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  159 bits (403), Expect = 1e-38
 Identities = 76/132 (57%), Positives = 98/132 (74%), Gaps = 4/132 (3%)
 Frame = +2

Query: 107 FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 277
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 278 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 454
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 455 CAKEYPETFIRV 490
             K YP++FIR+
Sbjct: 150 AKKAYPQSFIRI 161


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  159 bits (403), Expect = 1e-38
 Identities = 76/132 (57%), Positives = 93/132 (70%), Gaps = 4/132 (3%)
 Frame = +2

Query: 107 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 274
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 275 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 454
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 455 CAKEYPETFIRV 490
             K YPE F+R+
Sbjct: 146 AKKAYPEYFVRI 157


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  159 bits (403), Expect = 1e-38
 Identities = 76/132 (57%), Positives = 93/132 (70%), Gaps = 4/132 (3%)
 Frame = +2

Query: 107 FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 274
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 275 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 454
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 455 CAKEYPETFIRV 490
             K YPE F+R+
Sbjct: 146 AKKAYPEYFVRI 157


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  159 bits (402), Expect = 1e-38
 Identities = 75/136 (55%), Positives = 99/136 (72%), Gaps = 4/136 (2%)
 Frame = +2

Query: 95  LSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQ 265
           L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ EQ
Sbjct: 21  LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 266 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 442
           + K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL+
Sbjct: 81  LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 443 EIAECAKEYPETFIRV 490
           E+AEC  EYPE FIR+
Sbjct: 141 EVAECKAEYPEAFIRI 156


>sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1
          Length = 170

 Score =  159 bits (401), Expect = 2e-38
 Identities = 74/131 (56%), Positives = 90/131 (68%), Gaps = 3/131 (2%)
 Frame = +2

Query: 107 FSGLKATTLF--APKSPNPLA-ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 277
           F GLK+T     A +S   L  +SNG R+  M VW  Y NKKFETLSYLPPLS++ + KQ
Sbjct: 17  FQGLKSTASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQ 76

Query: 278 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 457
           VD+++R GW PC+EF K+G VYRE+     YYDGRYW MWKLPMFGC DA  V +E+ E 
Sbjct: 77  VDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEA 136

Query: 458 AKEYPETFIRV 490
            K YP+ F RV
Sbjct: 137 IKSYPDAFHRV 147


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
          Length = 178

 Score =  159 bits (401), Expect = 2e-38
 Identities = 74/132 (56%), Positives = 95/132 (71%), Gaps = 4/132 (3%)
 Frame = +2

Query: 107 FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 277
           F+GLK+   F   K  N  +   SNG RV  M VW P   KK+ETLSYLPPL+  Q+AK+
Sbjct: 25  FTGLKSNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKE 84

Query: 278 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 454
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D+A V++E+AE
Sbjct: 85  VDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAE 144

Query: 455 CAKEYPETFIRV 490
           C KEYP+ +IR+
Sbjct: 145 CKKEYPQAWIRI 156
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 132
Score (bit) 252.0
E-value 2.0e-65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957050|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_F14, 5'
         (724 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   252   2e-65
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   174   4e-42
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   171   3e-41
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   171   6e-41
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   164   7e-41
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   170   8e-41
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   170   8e-41
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   164   5e-40
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   162   5e-40
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   167   5e-40
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   160   1e-39
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   160   2e-39
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   165   2e-39
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   165   3e-39
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   165   3e-39
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   157   1e-38
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   157   1e-38
tr|A7Q6D7|A7Q6D7_VITVI Ribulose bisphosphate carboxylase small c...   160   1e-38
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   162   2e-38
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   162   3e-38
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   161   5e-38
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   161   5e-38
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c...   159   7e-38
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   160   1e-37
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   160   1e-37
tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos t...   158   1e-37
tr|Q9FEE4|Q9FEE4_WHEAT Ribulose bisphosphate carboxylase small c...   158   1e-37
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c...   157   2e-37
tr|Q9SAW7|Q9SAW7_TRITU Ribulose bisphosphate carboxylase small c...   157   2e-37
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   159   2e-37

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  252 bits (643), Expect = 2e-65
 Identities = 115/132 (87%), Positives = 124/132 (93%)
 Frame = +2

Query: 95  LSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 274
           LSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QIAK
Sbjct: 22  LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 275 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 454
           QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82  QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 455 CAKEYPETFIRV 490
           CAKEYP  FIRV
Sbjct: 142 CAKEYPTAFIRV 153



 Score = 37.7 bits (86), Expect = 0.77
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
 Frame = +3

Query: 420 KMPLLCCVKLQSAPRSILKPSSA-------CLGFDAKRQVQVSGFLVQK 545
           K+P+  C    S  R I + +          LGFDAKRQVQV+GFLV+K
Sbjct: 123 KLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKK 171


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  174 bits (442), Expect = 4e-42
 Identities = 82/133 (61%), Positives = 98/133 (73%), Gaps = 3/133 (2%)
 Frame = +2

Query: 101 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 280
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 281 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 451
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 452 ECAKEYPETFIRV 490
           EC + +P  ++RV
Sbjct: 147 ECKQSFPSCWVRV 159


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  171 bits (434), Expect = 3e-41
 Identities = 81/133 (60%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
 Frame = +2

Query: 101 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 280
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 281 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 451
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 452 ECAKEYPETFIRV 490
           EC + +P  ++RV
Sbjct: 147 ECKQSFPSCWVRV 159


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  171 bits (432), Expect = 6e-41
 Identities = 79/133 (59%), Positives = 96/133 (72%), Gaps = 3/133 (2%)
 Frame = +2

Query: 101 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 280
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 281 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 451
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 452 ECAKEYPETFIRV 490
           EC   YP  ++RV
Sbjct: 152 ECKTSYPSCWVRV 164


>tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small
           chain OS=Lactuca sativa PE=2 SV=1
          Length = 181

 Score =  164 bits (415), Expect(2) = 7e-41
 Identities = 76/137 (55%), Positives = 96/137 (70%), Gaps = 5/137 (3%)
 Frame = +2

Query: 95  LSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 262
           L+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS E
Sbjct: 22  LAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDE 81

Query: 263 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 439
            ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V+
Sbjct: 82  ALSKEIDYLIRNKWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVM 141

Query: 440 REIAECAKEYPETFIRV 490
           +E+ EC KEYP  FIRV
Sbjct: 142 KEVGECKKEYPNAFIRV 158



 Score = 26.9 bits (58), Expect(2) = 7e-41
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 492 LGFDAKRQVQVSGFLVQKAP 551
           +GFD+ RQVQ   F+V K P
Sbjct: 159 IGFDSVRQVQCISFIVSKPP 178


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  170 bits (431), Expect = 8e-41
 Identities = 78/133 (58%), Positives = 98/133 (73%), Gaps = 3/133 (2%)
 Frame = +2

Query: 101 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 280
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 281 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 451
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 452 ECAKEYPETFIRV 490
           EC  ++P  ++RV
Sbjct: 182 ECKSQFPSCWVRV 194


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  170 bits (431), Expect = 8e-41
 Identities = 79/133 (59%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
 Frame = +2

Query: 101 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 280
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 281 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 451
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 452 ECAKEYPETFIRV 490
           EC  ++P  ++RV
Sbjct: 152 ECKSQFPSCWVRV 164


>tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small
           chain OS=Panax ginseng PE=2 SV=1
          Length = 183

 Score =  164 bits (414), Expect(2) = 5e-40
 Identities = 75/132 (56%), Positives = 95/132 (71%), Gaps = 4/132 (3%)
 Frame = +2

Query: 107 FSGLKATTLF-APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 277
           F+GLK+T  F   +  N +    SNG RV  M VW P   KKFETLSYLP L+ EQ++K+
Sbjct: 28  FTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVWPPLGLKKFETLSYLPQLTQEQLSKE 87

Query: 278 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 454
           VD+++R GW PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 88  VDYLLRSGWVPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVEE 147

Query: 455 CAKEYPETFIRV 490
           C KEYP  +IR+
Sbjct: 148 CKKEYPNAYIRI 159



 Score = 24.6 bits (52), Expect(2) = 5e-40
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 492 LGFDAKRQVQVSGFLVQKAPLSKT 563
           +GFD  RQVQ   F+  K P + T
Sbjct: 160 IGFDNVRQVQCISFIAFKPPSAST 183


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  162 bits (409), Expect(2) = 5e-40
 Identities = 74/130 (56%), Positives = 91/130 (70%)
 Frame = +2

Query: 101 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 280
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 34  KAFSGLKSNTLFSSKAQTLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 93

Query: 281 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 460
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGC D+A VLREI EC 
Sbjct: 94  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCNDSAQVLREIEECK 153

Query: 461 KEYPETFIRV 490
           K +P  F+RV
Sbjct: 154 KTFPGCFVRV 163



 Score = 26.6 bits (57), Expect(2) = 5e-40
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 492 LGFDAKRQVQVSGFLVQK 545
           LGFD  +QVQ+ GFLV +
Sbjct: 164 LGFDNVKQVQICGFLVAR 181


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  167 bits (424), Expect = 5e-40
 Identities = 76/133 (57%), Positives = 98/133 (73%), Gaps = 3/133 (2%)
 Frame = +2

Query: 101 KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 280
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 281 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 451
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 452 ECAKEYPETFIRV 490
           EC  ++P  ++RV
Sbjct: 151 ECKTQFPSCWVRV 163